All Repeats of Monosiga brevicollis mitochondrion
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_004309 | (TTAA)4 | p4 | 1370 | 1385 | 16 | Design Primer |
2 | NC_004309 | (T)10atctcaaatattgtggatattaaaccaaaaaatat(AATAA)3 | c | 3082 | 3141 | 60 | Design Primer |
3 | NC_004309 | (TAAA)3 | p4 | 3719 | 3730 | 12 | Design Primer |
4 | NC_004309 | (ATAAA)3 | p5 | 4604 | 4618 | 15 | Design Primer |
5 | NC_004309 | (ATTTTT)3 | p6 | 5760 | 5777 | 18 | Design Primer |
6 | NC_004309 | (TTTA)3 | p4 | 6355 | 6366 | 12 | Design Primer |
7 | NC_004309 | (AATA)3tttttataaatttttaatttt(AATA)3tttttataaatttttaatttt(AATA)3tttttataaattttaatttttataaataattatataaatattctaaactgtacacaatttatatatttattaatataaatatca(AT)6ttattaatataaatatatgaatttaaaaataatgtat(TAAA)3 | c | 7146 | 7368 | 223 | Design Primer |
8 | NC_004309 | (AAAT)3 | p4 | 9496 | 9507 | 12 | Design Primer |
9 | NC_004309 | (AAT)4 | p3 | 9627 | 9638 | 12 | Design Primer |
10 | NC_004309 | (ATTT)3 | p4 | 9863 | 9874 | 12 | Design Primer |
11 | NC_004309 | (AATATA)3 | p6 | 10426 | 10443 | 18 | Design Primer |
12 | NC_004309 | (AATAA)3 | p5 | 11650 | 11664 | 15 | Design Primer |
13 | NC_004309 | (AAAAT)3 | p5 | 13716 | 13730 | 15 | Design Primer |
14 | NC_004309 | (TTA)4 | p3 | 15131 | 15142 | 12 | Design Primer |
15 | NC_004309 | (AAAAAT)5 | p6 | 16077 | 16106 | 30 | Design Primer |
16 | NC_004309 | (TAAAA)3(AAAATA)3*(AATA)3*aaaataaataatattaaataaatataaaccaaatttatagtatataatagagtaataatttggatataaaataaaaataaattatt(TAAAA)3(AAAATA)3*ataaataaaataaataatattaaataaatattaaataaaaataaattatt(TAAAA)3(AAAATA)3* | c* | 16666 | 16884 | 219 | Design Primer |
17 | NC_004309 | (TAAT)3 | p4 | 18269 | 18280 | 12 | Design Primer |
18 | NC_004309 | (TATTT)3tattatttatattgctattaattatttaaagagattattttatttaa(ATTT)3ttaatattaga(ATTT)3ttaatattaga(ATTT)3 | c | 18960 | 19079 | 120 | Design Primer |
19 | NC_004309 | (TTTA)3 | p4 | 19199 | 19210 | 12 | Design Primer |
20 | NC_004309 | (TTAT)3 | p4 | 20433 | 20444 | 12 | Design Primer |
21 | NC_004309 | (ATTT)3 | p4 | 21779 | 21790 | 12 | Design Primer |
22 | NC_004309 | (AATT)3 | p4 | 21967 | 21978 | 12 | Design Primer |
23 | NC_004309 | (AAAT)3 | p4 | 24391 | 24402 | 12 | Design Primer |
24 | NC_004309 | (AAAT)3 | p4 | 24765 | 24776 | 12 | Design Primer |
25 | NC_004309 | (AAAT)3 | p4 | 25545 | 25556 | 12 | Design Primer |
26 | NC_004309 | (AAT)4 | p3 | 26056 | 26067 | 12 | Design Primer |
27 | NC_004309 | (AT)6tttaattattaattataatttttataaattttataaatttttatttttattaatttttattttttatttattaacgata(AT)6 | c | 26759 | 26861 | 103 | Design Primer |
28 | NC_004309 | (AATAA)3 | p5 | 28040 | 28054 | 15 | Design Primer |
29 | NC_004309 | (AATAA)3 | p5 | 28200 | 28214 | 15 | Design Primer |
30 | NC_004309 | (AAATA)3 | p5 | 28387 | 28401 | 15 | Design Primer |
31 | NC_004309 | (ATTT)3 | p4 | 30283 | 30294 | 12 | Design Primer |
32 | NC_004309 | (TTAT)3 | p4 | 30406 | 30417 | 12 | Design Primer |
33 | NC_004309 | (TAAAA)3attaataatataaatattaaaagttaatagtatataatagaattacaaattttgataggtttaataaattaagtaaattaataaaaattaat(TAAAA)3ataaaat(TAAAA)3ataaattatgtaaatattaaagttaatagtatataatagaattacaaattttgataa(ATAAT)4 | c | 30872 | 31092 | 221 | Design Primer |
34 | NC_004309 | (AATAA)3ataaaaaaattaattatatttttaatataaattttttaatagaatttaatct(AATA)4atatttatataattataatataaataaatatatataataaaaataatatttatatatttataaaataaaaat(AATAA)3ataaaaaaattaattatattttaaatatagattttttaatagaattaaatagaatttaatct(AATA)6ataaaatatattatataaaaaataatatttatataaataaaaataaaa(AAT)4 | c | 31243 | 31558 | 316 | Design Primer |
35 | NC_004309 | (TAA)5 | p3 | 33224 | 33238 | 15 | Design Primer |
36 | NC_004309 | (TTA)4 | p3 | 33380 | 33391 | 12 | Design Primer |
37 | NC_004309 | (TAAA)3 | p4 | 34427 | 34438 | 12 | Design Primer |
38 | NC_004309 | (TTAT)3aatata(TTAT)3aatatttatttatatatt(ATA)4attcttaaatttataataatatattaatttatatacttcattatatatttttatatatatt(ATA)4 | c | 34888 | 35020 | 133 | Design Primer |
39 | NC_004309 | (TAA)5 | p3 | 35623 | 35637 | 15 | Design Primer |
40 | NC_004309 | (TATT)3 | p4 | 36121 | 36132 | 12 | Design Primer |
41 | NC_004309 | (AATAA)3 | p5 | 36966 | 36980 | 15 | Design Primer |
42 | NC_004309 | (ATATT)3ttaatatttatttttataatattatatttttaaataaattatattttaatatttatttttataatattatatttttaaataatattatatttta(ATATT)3 | c | 37769 | 37892 | 124 | Design Primer |
43 | NC_004309 | (ATA)4 | p3 | 38704 | 38715 | 12 | Design Primer |
44 | NC_004309 | (TTATT)3 | p5 | 40210 | 40224 | 15 | Design Primer |
45 | NC_004309 | (ATAA)3 | p4 | 42990 | 43001 | 12 | Design Primer |
46 | NC_004309 | (TAAA)3 | p4 | 43659 | 43670 | 12 | Design Primer |
47 | NC_004309 | (T)10 | p1 | 43946 | 43955 | 10 | Design Primer |
48 | NC_004309 | (TAA)4 | p3 | 45755 | 45766 | 12 | Design Primer |
49 | NC_004309 | (TAA)4 | p3 | 45892 | 45903 | 12 | Design Primer |
50 | NC_004309 | (TAA)4atattagtattttataaaaatgatactcaacaaaaaaatt(AATA)3 | c | 46051 | 46114 | 64 | Design Primer |
51 | NC_004309 | (TTA)4 | p3 | 46326 | 46337 | 12 | Design Primer |
52 | NC_004309 | (AATA)3ttaatttaataaaaaatataatc(AATAA)3a(AAAT)3aaaataaatatttataaat(TAAA)3 | c | 46795 | 46888 | 94 | Design Primer |
53 | NC_004309 | (TTA)4 | p3 | 47169 | 47180 | 12 | Design Primer |
54 | NC_004309 | (TTA)4 | p3 | 47304 | 47315 | 12 | Design Primer |
55 | NC_004309 | (ATT)4 | p3 | 47866 | 47877 | 12 | Design Primer |
56 | NC_004309 | (TTAA)3 | p4 | 48744 | 48755 | 12 | Design Primer |
57 | NC_004309 | (ATATT)3 | p5 | 48946 | 48960 | 15 | Design Primer |
58 | NC_004309 | (AATA)3 | p4 | 52018 | 52029 | 12 | Design Primer |
59 | NC_004309 | (AATAA)3a(AAAT)3aaaataaattaaattaattaataataattaaatatatattattaaaatt(AATAA)3a(AAAT)3aaaataaat(TAAA)3 | c | 52394 | 52519 | 126 | Design Primer |
60 | NC_004309 | (AATAA)3 | p5 | 52654 | 52668 | 15 | Design Primer |
61 | NC_004309 | (TATT)3 | p4 | 53184 | 53195 | 12 | Design Primer |
62 | NC_004309 | (TATAT)3aaaaaatattaaaaatataaaaaatattaaaaaaataaat(TAAA)3atattatatataaaattattaattattcatgaaatatattctttaatattctattttt(AATA)3ttaat(TTAA)3 | c | 54431 | 54584 | 154 | Design Primer |
63 | NC_004309 | (TATT)3 | p4 | 55290 | 55301 | 12 | Design Primer |
64 | NC_004309 | (AAAT)3 | p4 | 57616 | 57627 | 12 | Design Primer |
65 | NC_004309 | (ATTT)3 | p4 | 58030 | 58041 | 12 | Design Primer |
66 | NC_004309 | (ATTT)3 | p4 | 58145 | 58156 | 12 | Design Primer |
67 | NC_004309 | (TTTA)3 | p4 | 59456 | 59467 | 12 | Design Primer |
68 | NC_004309 | (AAAATA)3 | p6 | 60614 | 60631 | 18 | Design Primer |
69 | NC_004309 | (TATATT)3 | p6 | 60821 | 60838 | 18 | Design Primer |
70 | NC_004309 | (AAT)4 | p3 | 62304 | 62315 | 12 | Design Primer |
71 | NC_004309 | (TAATAT)3t(TAAAA)3 | c | 62533 | 62566 | 34 | Design Primer |
72 | NC_004309 | (A)10tatattt(ATAAAA)3aataaaatttttataaaaataaaaaaaata(AAAAT)3 | c | 62673 | 62752 | 80 | Design Primer |
73 | NC_004309 | (TTTA)3 | p4 | 63641 | 63652 | 12 | Design Primer |
74 | NC_004309 | (AAAAT)3 | p5 | 63850 | 63864 | 15 | Design Primer |
75 | NC_004309 | (ATT)4aaatatattatttcaaaattcatattaggtatataactaataaaaataatttttaatatttaatataat(AAATA)3aaaatttaaattttataaaat(TAAATA)3 | c | 64251 | 64385 | 135 | Design Primer |
76 | NC_004309 | (TAA)4 | p3 | 66245 | 66256 | 12 | Design Primer |
77 | NC_004309 | (A)11 | p1 | 66784 | 66794 | 11 | Design Primer |
78 | NC_004309 | (AAT)4 | p3 | 67177 | 67188 | 12 | Design Primer |
79 | NC_004309 | (TAATTT)3 | p6 | 67734 | 67751 | 18 | Design Primer |
80 | NC_004309 | (AAAATA)10 | p6 | 68091 | 68150 | 60 | Design Primer |
81 | NC_004309 | (ATA)4 | p3 | 68896 | 68907 | 12 | Design Primer |
82 | NC_004309 | (ATAA)3 | p4 | 69195 | 69206 | 12 | Design Primer |
83 | NC_004309 | (AAAT)3 | p4 | 69507 | 69518 | 12 | Design Primer |
84 | NC_004309 | (TTA)4 | p3 | 69760 | 69771 | 12 | Design Primer |
85 | NC_004309 | (CTTTAA)3 | p6 | 70772 | 70789 | 18 | Design Primer |
86 | NC_004309 | (TTATTT)3 | p6 | 71589 | 71606 | 18 | Design Primer |
87 | NC_004309 | (AATA)3aaaataaat(TAAA)3 | c | 72094 | 72126 | 33 | Design Primer |
88 | NC_004309 | (AATAA)3 | p5 | 72834 | 72848 | 15 | Design Primer |
89 | NC_004309 | (ATAA)3aatataaaataaaat(ATAAA)3 | c | 73436 | 73477 | 42 | Design Primer |