Tetra-nucleotide Imperfect Repeats of Cymbidium mannii voucher KUN:YJB100602 chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_021433 | ATGG | 3 | 1437 | 1448 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | Non-Coding |
| 2 | NC_021433 | AATA | 3 | 1582 | 1592 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 3 | NC_021433 | TAAA | 3 | 6181 | 6192 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 4 | NC_021433 | TGAA | 3 | 6350 | 6361 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 5 | NC_021433 | GTTT | 3 | 6585 | 6596 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | Non-Coding |
| 6 | NC_021433 | CTAT | 3 | 9941 | 9952 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 7 | NC_021433 | TAGA | 3 | 10163 | 10173 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 51194356 |
| 8 | NC_021433 | GTCT | 3 | 11077 | 11088 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | 51194356 |
| 9 | NC_021433 | AAAT | 3 | 12309 | 12319 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 51194356 |
| 10 | NC_021433 | CTTT | 3 | 12634 | 12644 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 51194356 |
| 11 | NC_021433 | ACTA | 3 | 13845 | 13856 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 12 | NC_021433 | TTTA | 3 | 16023 | 16033 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 13 | NC_021433 | GTCT | 3 | 16132 | 16142 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 51194355 |
| 14 | NC_021433 | TCAA | 3 | 16341 | 16352 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 51194355 |
| 15 | NC_021433 | TTCA | 3 | 22213 | 22224 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 51194355 |
| 16 | NC_021433 | AGCT | 3 | 27107 | 27118 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | Non-Coding |
| 17 | NC_021433 | TCTA | 3 | 27190 | 27200 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 18 | NC_021433 | AAGT | 3 | 28229 | 28239 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 19 | NC_021433 | GAAA | 3 | 28932 | 28942 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 20 | NC_021433 | TGAA | 3 | 29097 | 29108 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 21 | NC_021433 | TAAT | 3 | 29667 | 29682 | 16 | 50 % | 50 % | 0 % | 0 % | 6 % | Non-Coding |
| 22 | NC_021433 | TTCT | 3 | 30396 | 30407 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 23 | NC_021433 | AGTA | 3 | 30751 | 30761 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 24 | NC_021433 | AAAG | 3 | 30864 | 30875 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 25 | NC_021433 | AAAG | 4 | 31966 | 31981 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | Non-Coding |
| 26 | NC_021433 | GAAA | 3 | 35270 | 35281 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 51194357 |
| 27 | NC_021433 | TTTA | 3 | 36243 | 36253 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 28 | NC_021433 | TTCT | 3 | 36278 | 36288 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 29 | NC_021433 | ACAA | 3 | 38076 | 38087 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | Non-Coding |
| 30 | NC_021433 | AAGA | 3 | 40568 | 40579 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 51194355 |
| 31 | NC_021433 | AATG | 3 | 40967 | 40978 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 51194355 |
| 32 | NC_021433 | TCTT | 3 | 44097 | 44108 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 51194355 |
| 33 | NC_021433 | TTGA | 3 | 47836 | 47848 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 34 | NC_021433 | TTCA | 3 | 55635 | 55645 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 35 | NC_021433 | AAAG | 3 | 57968 | 57978 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 36 | NC_021433 | AAAT | 3 | 59520 | 59531 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | 51194356 |
| 37 | NC_021433 | AAAT | 3 | 59536 | 59546 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 38 | NC_021433 | ATCA | 3 | 60412 | 60423 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 39 | NC_021433 | GAAA | 3 | 63070 | 63082 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 51194357 |
| 40 | NC_021433 | TTTC | 3 | 64210 | 64221 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 41 | NC_021433 | AGAA | 3 | 64241 | 64252 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 42 | NC_021433 | AAAT | 3 | 65825 | 65836 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 43 | NC_021433 | TTTA | 3 | 65877 | 65887 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 44 | NC_021433 | AAGA | 3 | 67729 | 67740 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | Non-Coding |
| 45 | NC_021433 | ATTA | 4 | 67907 | 67921 | 15 | 50 % | 50 % | 0 % | 0 % | 6 % | Non-Coding |
| 46 | NC_021433 | CTTT | 3 | 68126 | 68136 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 47 | NC_021433 | GAAA | 3 | 68395 | 68406 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 51194360 |
| 48 | NC_021433 | TCTT | 3 | 69029 | 69040 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 49 | NC_021433 | TTTC | 3 | 69595 | 69607 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | Non-Coding |
| 50 | NC_021433 | AAAT | 3 | 71483 | 71494 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 51194354 |
| 51 | NC_021433 | AATA | 3 | 72568 | 72579 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 51194354 |
| 52 | NC_021433 | TTTC | 3 | 75204 | 75215 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 51194354 |
| 53 | NC_021433 | CAAT | 3 | 76128 | 76139 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 51194354 |
| 54 | NC_021433 | TATT | 3 | 77408 | 77418 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 51194354 |
| 55 | NC_021433 | AATG | 3 | 78094 | 78104 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 51194354 |
| 56 | NC_021433 | AATC | 4 | 79321 | 79336 | 16 | 50 % | 25 % | 0 % | 25 % | 6 % | 51194354 |
| 57 | NC_021433 | TTTA | 3 | 81686 | 81696 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 51194354 |
| 58 | NC_021433 | AAAG | 3 | 82923 | 82933 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 51194354 |
| 59 | NC_021433 | TTTA | 3 | 83655 | 83666 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 51194354 |
| 60 | NC_021433 | TTCT | 3 | 83723 | 83734 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 51194354 |
| 61 | NC_021433 | AATT | 3 | 84762 | 84773 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 51194354 |
| 62 | NC_021433 | GCAA | 3 | 88250 | 88260 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 51194354 |
| 63 | NC_021433 | TTCT | 3 | 89524 | 89534 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 51194354 |
| 64 | NC_021433 | GAAA | 3 | 89648 | 89660 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 51194354 |
| 65 | NC_021433 | TGAT | 3 | 92515 | 92527 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 51194354 |
| 66 | NC_021433 | TTTC | 3 | 93466 | 93477 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 51194354 |
| 67 | NC_021433 | TCTA | 3 | 95615 | 95626 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 51194354 |
| 68 | NC_021433 | TCTA | 3 | 104542 | 104553 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 51194362 |
| 69 | NC_021433 | GAGG | 3 | 107372 | 107383 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 51194362 |
| 70 | NC_021433 | AGGT | 3 | 107584 | 107595 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 51194362 |
| 71 | NC_021433 | TAAG | 3 | 108704 | 108714 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 51194362 |
| 72 | NC_021433 | ATGA | 5 | 110023 | 110041 | 19 | 50 % | 25 % | 25 % | 0 % | 10 % | 51194362 |
| 73 | NC_021433 | TAGA | 3 | 116407 | 116417 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 51194362 |
| 74 | NC_021433 | AAAT | 3 | 118326 | 118338 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 51194362 |
| 75 | NC_021433 | ATGA | 3 | 118364 | 118375 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 51194362 |
| 76 | NC_021433 | TTTC | 3 | 120083 | 120093 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 51194362 |
| 77 | NC_021433 | AAAC | 3 | 120840 | 120851 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 51194362 |
| 78 | NC_021433 | AAGA | 3 | 121649 | 121660 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 51194362 |
| 79 | NC_021433 | AAGA | 3 | 123963 | 123974 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 51194362 |
| 80 | NC_021433 | TTCC | 3 | 125163 | 125175 | 13 | 0 % | 50 % | 0 % | 50 % | 7 % | 51194362 |
| 81 | NC_021433 | TTAT | 3 | 126078 | 126089 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 51194362 |
| 82 | NC_021433 | TTTG | 3 | 126124 | 126135 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | 51194362 |
| 83 | NC_021433 | CATT | 3 | 126338 | 126349 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 51194362 |
| 84 | NC_021433 | TTCA | 3 | 127081 | 127093 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | 51194362 |
| 85 | NC_021433 | CTTT | 4 | 129284 | 129299 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | 51194362 |
| 86 | NC_021433 | ATTC | 4 | 130478 | 130492 | 15 | 25 % | 50 % | 0 % | 25 % | 6 % | 51194362 |
| 87 | NC_021433 | CTTA | 3 | 131807 | 131817 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 51194362 |
| 88 | NC_021433 | TAGA | 3 | 140030 | 140040 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 51194362 |
| 89 | NC_021433 | TAGA | 3 | 144895 | 144906 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 90 | NC_021433 | TGAA | 3 | 147043 | 147054 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 51194355 |
| 91 | NC_021433 | ATCA | 3 | 147994 | 148006 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 51194355 |
| 92 | NC_021433 | TGAT | 3 | 148089 | 148101 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 51194355 |
| 93 | NC_021433 | TTGC | 3 | 152261 | 152271 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 51194355 |
| 94 | NC_021433 | CATT | 3 | 154724 | 154734 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |