Tetra-nucleotide Imperfect Repeats of Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_021429 | ATGG | 3 | 1461 | 1472 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | Non-Coding |
| 2 | NC_021429 | AATA | 3 | 1606 | 1616 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 3 | NC_021429 | AAAT | 3 | 4610 | 4621 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 4 | NC_021429 | AAAG | 3 | 6414 | 6425 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 5 | NC_021429 | ATTT | 3 | 6499 | 6509 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 6 | NC_021429 | ATTT | 3 | 7218 | 7229 | 12 | 25 % | 75 % | 0 % | 0 % | 0 % | Non-Coding |
| 7 | NC_021429 | CTAT | 3 | 9954 | 9965 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 8 | NC_021429 | GTCT | 3 | 11090 | 11101 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | 52085049 |
| 9 | NC_021429 | AAAT | 3 | 12322 | 12332 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 52085050 |
| 10 | NC_021429 | TTAT | 3 | 12359 | 12370 | 12 | 25 % | 75 % | 0 % | 0 % | 0 % | 52085050 |
| 11 | NC_021429 | AAAG | 3 | 12423 | 12433 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 52085050 |
| 12 | NC_021429 | CTTT | 3 | 12706 | 12716 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 52085050 |
| 13 | NC_021429 | ACTA | 3 | 13919 | 13930 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 14 | NC_021429 | TTTA | 3 | 16099 | 16109 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 15 | NC_021429 | TCAA | 3 | 16417 | 16428 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 52085048 |
| 16 | NC_021429 | TTCA | 3 | 22312 | 22323 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 52085049 |
| 17 | NC_021429 | GAAA | 3 | 25994 | 26006 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 52085049 |
| 18 | NC_021429 | ATCT | 3 | 27212 | 27223 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 19 | NC_021429 | CTAT | 3 | 27300 | 27310 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 20 | NC_021429 | AAGT | 3 | 28352 | 28362 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 21 | NC_021429 | GAAA | 3 | 29051 | 29061 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 22 | NC_021429 | TGAA | 3 | 29216 | 29227 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 23 | NC_021429 | TAAT | 3 | 29785 | 29800 | 16 | 50 % | 50 % | 0 % | 0 % | 6 % | Non-Coding |
| 24 | NC_021429 | TTCT | 3 | 30505 | 30516 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 25 | NC_021429 | AGTA | 3 | 30861 | 30871 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 26 | NC_021429 | AAAG | 3 | 30974 | 30985 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 27 | NC_021429 | AAAG | 4 | 32060 | 32075 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | Non-Coding |
| 28 | NC_021429 | TTCT | 3 | 33652 | 33662 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 29 | NC_021429 | GAAA | 3 | 35356 | 35367 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 52085050 |
| 30 | NC_021429 | TTCT | 3 | 36385 | 36395 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 31 | NC_021429 | ACAA | 3 | 38188 | 38199 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | Non-Coding |
| 32 | NC_021429 | AAGA | 3 | 40680 | 40691 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 52085049 |
| 33 | NC_021429 | AATG | 3 | 41079 | 41090 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 52085049 |
| 34 | NC_021429 | TTTA | 3 | 42827 | 42838 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 35 | NC_021429 | TCTT | 3 | 44211 | 44222 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 52085049 |
| 36 | NC_021429 | CATA | 3 | 47641 | 47652 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 37 | NC_021429 | TTGA | 3 | 47945 | 47957 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 38 | NC_021429 | TTCA | 3 | 55902 | 55912 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 39 | NC_021429 | AAAG | 3 | 58226 | 58236 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 40 | NC_021429 | AAAT | 3 | 59778 | 59789 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | 52085050 |
| 41 | NC_021429 | ATCA | 3 | 60668 | 60679 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 42 | NC_021429 | GAAA | 3 | 63342 | 63354 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 52085051 |
| 43 | NC_021429 | TAGA | 4 | 67490 | 67505 | 16 | 50 % | 25 % | 25 % | 0 % | 6 % | Non-Coding |
| 44 | NC_021429 | GAAA | 3 | 68712 | 68723 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 52085054 |
| 45 | NC_021429 | TCTT | 3 | 69348 | 69359 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 46 | NC_021429 | TTTC | 3 | 69913 | 69925 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | Non-Coding |
| 47 | NC_021429 | AAAG | 3 | 71553 | 71563 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 52085048 |
| 48 | NC_021429 | AATA | 3 | 72930 | 72941 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 52085048 |
| 49 | NC_021429 | TTTC | 3 | 75677 | 75688 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 52085048 |
| 50 | NC_021429 | TATT | 3 | 77882 | 77892 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 52085048 |
| 51 | NC_021429 | AATG | 3 | 78577 | 78587 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 52085048 |
| 52 | NC_021429 | AATC | 4 | 79806 | 79821 | 16 | 50 % | 25 % | 0 % | 25 % | 6 % | 52085048 |
| 53 | NC_021429 | TTTA | 3 | 82171 | 82181 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 52085048 |
| 54 | NC_021429 | ATTT | 6 | 83953 | 83974 | 22 | 25 % | 75 % | 0 % | 0 % | 9 % | 52085048 |
| 55 | NC_021429 | TTCT | 3 | 84141 | 84152 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 52085048 |
| 56 | NC_021429 | GCAA | 3 | 88669 | 88679 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 52085048 |
| 57 | NC_021429 | TTCT | 3 | 89943 | 89953 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 52085048 |
| 58 | NC_021429 | TGAT | 3 | 92934 | 92946 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 52085048 |
| 59 | NC_021429 | TTTC | 3 | 93885 | 93896 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 52085048 |
| 60 | NC_021429 | TCTA | 3 | 96034 | 96045 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 52085048 |
| 61 | NC_021429 | TCTA | 3 | 105350 | 105361 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 52085056 |
| 62 | NC_021429 | GAGG | 3 | 108180 | 108191 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 52085056 |
| 63 | NC_021429 | AGGT | 3 | 108392 | 108403 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 52085056 |
| 64 | NC_021429 | TAAG | 3 | 109512 | 109522 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 52085056 |
| 65 | NC_021429 | ATTC | 3 | 110819 | 110829 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 52085056 |
| 66 | NC_021429 | TGAA | 5 | 110843 | 110861 | 19 | 50 % | 25 % | 25 % | 0 % | 10 % | 52085056 |
| 67 | NC_021429 | GAAA | 3 | 112301 | 112313 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 52085056 |
| 68 | NC_021429 | TTTA | 3 | 114652 | 114662 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 52085056 |
| 69 | NC_021429 | AAAT | 3 | 115395 | 115406 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 52085056 |
| 70 | NC_021429 | TAGA | 3 | 117485 | 117495 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 52085056 |
| 71 | NC_021429 | ATGA | 3 | 119415 | 119426 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 52085056 |
| 72 | NC_021429 | TTTC | 3 | 121080 | 121090 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 52085056 |
| 73 | NC_021429 | AAGA | 3 | 122638 | 122649 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 52085056 |
| 74 | NC_021429 | AAGA | 3 | 125185 | 125196 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 52085056 |
| 75 | NC_021429 | TTCC | 3 | 126382 | 126394 | 13 | 0 % | 50 % | 0 % | 50 % | 7 % | 52085056 |
| 76 | NC_021429 | TTAT | 3 | 127285 | 127296 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 52085056 |
| 77 | NC_021429 | TTTG | 3 | 127331 | 127342 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | 52085056 |
| 78 | NC_021429 | CATT | 3 | 127545 | 127556 | 12 | 25 % | 50 % | 0 % | 25 % | 0 % | 52085056 |
| 79 | NC_021429 | TTCA | 3 | 128288 | 128300 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | 52085056 |
| 80 | NC_021429 | TTTC | 3 | 130226 | 130238 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 52085056 |
| 81 | NC_021429 | CTTT | 4 | 130491 | 130506 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | 52085056 |
| 82 | NC_021429 | ATGA | 3 | 131704 | 131715 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 52085056 |
| 83 | NC_021429 | CTTA | 3 | 133017 | 133027 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 52085056 |
| 84 | NC_021429 | GAAT | 3 | 141223 | 141233 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 52085056 |
| 85 | NC_021429 | TAGA | 3 | 146501 | 146512 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 86 | NC_021429 | TGAA | 3 | 148649 | 148660 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 52085048 |
| 87 | NC_021429 | ATCA | 3 | 149600 | 149612 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 52085048 |
| 88 | NC_021429 | TGAT | 3 | 149695 | 149707 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 52085048 |
| 89 | NC_021429 | ATTT | 3 | 152466 | 152477 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 52085048 |
| 90 | NC_021429 | TTGC | 3 | 153867 | 153877 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 52085048 |
| 91 | NC_021429 | CATT | 3 | 156330 | 156340 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |