Tetra-nucleotide Imperfect Repeats of Chondrus crispus plastid complete genome
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_020795 | AAAT | 3 | 1698 | 1709 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 47143488 |
| 2 | NC_020795 | TATT | 3 | 2061 | 2072 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 47143488 |
| 3 | NC_020795 | AAAC | 3 | 3824 | 3835 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 47143488 |
| 4 | NC_020795 | AAAT | 3 | 5058 | 5068 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 5 | NC_020795 | AATA | 3 | 6213 | 6223 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 6 | NC_020795 | TTTA | 3 | 7640 | 7651 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 7 | NC_020795 | ATCC | 3 | 9544 | 9554 | 11 | 25 % | 25 % | 0 % | 50 % | 9 % | 47143489 |
| 8 | NC_020795 | AATA | 3 | 11921 | 11932 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 9 | NC_020795 | ATTA | 3 | 12341 | 12352 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 47143489 |
| 10 | NC_020795 | TTTA | 3 | 13538 | 13549 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 11 | NC_020795 | TAAA | 3 | 14180 | 14191 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 47143490 |
| 12 | NC_020795 | GTAA | 3 | 14535 | 14545 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 47143490 |
| 13 | NC_020795 | TAAA | 3 | 14723 | 14735 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 47143490 |
| 14 | NC_020795 | AAAT | 3 | 15413 | 15424 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 47143490 |
| 15 | NC_020795 | AAAC | 3 | 18528 | 18538 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | 47143490 |
| 16 | NC_020795 | TAAT | 3 | 21364 | 21376 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 47143490 |
| 17 | NC_020795 | AATA | 3 | 25535 | 25545 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 18 | NC_020795 | TCCT | 3 | 27597 | 27609 | 13 | 0 % | 50 % | 0 % | 50 % | 7 % | Non-Coding |
| 19 | NC_020795 | AATT | 3 | 30074 | 30085 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 20 | NC_020795 | TCTG | 3 | 30812 | 30823 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 47143491 |
| 21 | NC_020795 | GCAA | 3 | 39997 | 40007 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 47143492 |
| 22 | NC_020795 | AAAT | 3 | 43839 | 43850 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 47143492 |
| 23 | NC_020795 | TCTT | 3 | 45727 | 45739 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 47143493 |
| 24 | NC_020795 | TTAA | 3 | 46923 | 46933 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 47143493 |
| 25 | NC_020795 | ATAC | 3 | 48178 | 48189 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 47143493 |
| 26 | NC_020795 | ATTT | 3 | 49019 | 49030 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 47143493 |
| 27 | NC_020795 | TTGC | 3 | 52257 | 52267 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 47143493 |
| 28 | NC_020795 | TTGC | 4 | 53492 | 53506 | 15 | 0 % | 50 % | 25 % | 25 % | 6 % | 47143493 |
| 29 | NC_020795 | GAAA | 3 | 55116 | 55127 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 47143493 |
| 30 | NC_020795 | TAAT | 3 | 55779 | 55790 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 47143494 |
| 31 | NC_020795 | AAAT | 3 | 57559 | 57570 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 32 | NC_020795 | ATTT | 3 | 57643 | 57654 | 12 | 25 % | 75 % | 0 % | 0 % | 0 % | Non-Coding |
| 33 | NC_020795 | ATTT | 3 | 57665 | 57676 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 47143494 |
| 34 | NC_020795 | ATGT | 3 | 57884 | 57895 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | Non-Coding |
| 35 | NC_020795 | GTAT | 3 | 58585 | 58595 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 47143494 |
| 36 | NC_020795 | TAAA | 3 | 58654 | 58664 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 47143494 |
| 37 | NC_020795 | TTTG | 3 | 59720 | 59731 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | Non-Coding |
| 38 | NC_020795 | ATTT | 3 | 59850 | 59862 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | Non-Coding |
| 39 | NC_020795 | AATA | 3 | 61042 | 61053 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 40 | NC_020795 | AATT | 3 | 65840 | 65850 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | Non-Coding |
| 41 | NC_020795 | ATTA | 3 | 67023 | 67035 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | Non-Coding |
| 42 | NC_020795 | AATT | 3 | 70012 | 70022 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 47143495 |
| 43 | NC_020795 | TTAA | 3 | 70577 | 70587 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 47143495 |
| 44 | NC_020795 | GTAT | 3 | 71140 | 71151 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 47143495 |
| 45 | NC_020795 | GTTT | 3 | 74432 | 74442 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | 47143496 |
| 46 | NC_020795 | GATT | 3 | 75784 | 75795 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 47143496 |
| 47 | NC_020795 | ATTG | 3 | 75963 | 75974 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | Non-Coding |
| 48 | NC_020795 | TTCT | 3 | 78828 | 78838 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 47143497 |
| 49 | NC_020795 | AAGA | 3 | 82683 | 82693 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 47143498 |
| 50 | NC_020795 | ATAA | 3 | 85008 | 85018 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 51 | NC_020795 | GCAA | 3 | 85230 | 85240 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 47143498 |
| 52 | NC_020795 | TATT | 3 | 85498 | 85509 | 12 | 25 % | 75 % | 0 % | 0 % | 0 % | Non-Coding |
| 53 | NC_020795 | AGAA | 3 | 86414 | 86425 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 47143498 |
| 54 | NC_020795 | ATTC | 3 | 87634 | 87644 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 47143498 |
| 55 | NC_020795 | CAGC | 3 | 87686 | 87697 | 12 | 25 % | 0 % | 25 % | 50 % | 8 % | 47143498 |
| 56 | NC_020795 | TAAT | 3 | 89750 | 89761 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 47143498 |
| 57 | NC_020795 | AAAG | 3 | 94256 | 94267 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 58 | NC_020795 | TAAT | 3 | 95734 | 95745 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 59 | NC_020795 | TTGA | 3 | 97529 | 97539 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
| 60 | NC_020795 | TATC | 3 | 98465 | 98476 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 61 | NC_020795 | AATT | 3 | 99219 | 99229 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | Non-Coding |
| 62 | NC_020795 | ATAA | 3 | 100442 | 100453 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 63 | NC_020795 | AATA | 3 | 104070 | 104080 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 47143500 |
| 64 | NC_020795 | TAGT | 3 | 104695 | 104705 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
| 65 | NC_020795 | TTAA | 3 | 107512 | 107523 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 66 | NC_020795 | TTTA | 3 | 108703 | 108714 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 47143500 |
| 67 | NC_020795 | ACTT | 3 | 110851 | 110862 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 68 | NC_020795 | TTGC | 3 | 110983 | 110993 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 47143501 |
| 69 | NC_020795 | TTAA | 3 | 113330 | 113340 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 47143501 |
| 70 | NC_020795 | TTAG | 3 | 113520 | 113531 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 47143501 |
| 71 | NC_020795 | AAAT | 3 | 115409 | 115419 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 47143501 |
| 72 | NC_020795 | AAAT | 4 | 115963 | 115977 | 15 | 75 % | 25 % | 0 % | 0 % | 6 % | 47143501 |
| 73 | NC_020795 | ATTA | 3 | 116041 | 116052 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 47143501 |
| 74 | NC_020795 | TAAA | 3 | 117877 | 117887 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 47143501 |
| 75 | NC_020795 | AGAA | 3 | 121984 | 121995 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 47143501 |
| 76 | NC_020795 | TTAA | 3 | 125911 | 125922 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 77 | NC_020795 | ATTT | 3 | 125925 | 125935 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 78 | NC_020795 | TATT | 3 | 126275 | 126286 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 47143502 |
| 79 | NC_020795 | TAGA | 3 | 127351 | 127361 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 47143502 |
| 80 | NC_020795 | TAAT | 3 | 127820 | 127832 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 47143502 |
| 81 | NC_020795 | ATTT | 3 | 135857 | 135868 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 47143503 |
| 82 | NC_020795 | TAAA | 3 | 135885 | 135895 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 47143503 |
| 83 | NC_020795 | ATTT | 3 | 139679 | 139689 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 84 | NC_020795 | AATT | 3 | 140492 | 140502 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 47143503 |
| 85 | NC_020795 | AATT | 4 | 140748 | 140763 | 16 | 50 % | 50 % | 0 % | 0 % | 6 % | 47143503 |
| 86 | NC_020795 | GCAT | 3 | 158225 | 158235 | 11 | 25 % | 25 % | 25 % | 25 % | 9 % | 47143506 |
| 87 | NC_020795 | AAAT | 3 | 159468 | 159479 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 47143506 |
| 88 | NC_020795 | TAAA | 3 | 160765 | 160776 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 89 | NC_020795 | ATTT | 3 | 163967 | 163978 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 47143506 |
| 90 | NC_020795 | AGTA | 3 | 164229 | 164240 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 47143506 |
| 91 | NC_020795 | ACAG | 3 | 165637 | 165647 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | Non-Coding |
| 92 | NC_020795 | TAGA | 3 | 166407 | 166417 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 47143506 |
| 93 | NC_020795 | AATA | 3 | 167258 | 167269 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 94 | NC_020795 | ATTT | 3 | 169307 | 169318 | 12 | 25 % | 75 % | 0 % | 0 % | 0 % | 47143507 |
| 95 | NC_020795 | AATT | 3 | 169620 | 169630 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 47143507 |
| 96 | NC_020795 | CAAT | 3 | 170130 | 170141 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 47143507 |
| 97 | NC_020795 | TTAA | 3 | 170904 | 170915 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 47143507 |
| 98 | NC_020795 | ATCA | 3 | 171665 | 171675 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 47143507 |
| 99 | NC_020795 | TTAA | 3 | 175133 | 175144 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 100 | NC_020795 | TTAA | 3 | 177285 | 177296 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 101 | NC_020795 | CTAT | 3 | 177632 | 177644 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | 47143508 |