Tri-nucleotide Imperfect Repeats of Chondrus crispus plastid complete genome
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | NC_020795 | TAA | 4 | 1936 | 1946 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
2 | NC_020795 | ACT | 4 | 3453 | 3463 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 47143488 |
3 | NC_020795 | AGA | 4 | 5274 | 5286 | 13 | 66.67 % | 0 % | 33.33 % | 0 % | 7 % | 47143488 |
4 | NC_020795 | TAG | 4 | 5561 | 5572 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 47143488 |
5 | NC_020795 | TGC | 4 | 5634 | 5645 | 12 | 0 % | 33.33 % | 33.33 % | 33.33 % | 8 % | 47143488 |
6 | NC_020795 | AGA | 4 | 5667 | 5678 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 47143488 |
7 | NC_020795 | ATA | 4 | 6175 | 6187 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | Non-Coding |
8 | NC_020795 | TAT | 4 | 6184 | 6196 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | Non-Coding |
9 | NC_020795 | CAA | 4 | 7129 | 7140 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | 47143489 |
10 | NC_020795 | CTA | 4 | 12662 | 12674 | 13 | 33.33 % | 33.33 % | 0 % | 33.33 % | 7 % | 47143489 |
11 | NC_020795 | TTA | 4 | 13518 | 13529 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | Non-Coding |
12 | NC_020795 | ATT | 4 | 13709 | 13720 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | Non-Coding |
13 | NC_020795 | ATT | 5 | 15634 | 15648 | 15 | 33.33 % | 66.67 % | 0 % | 0 % | 6 % | 47143490 |
14 | NC_020795 | ATT | 4 | 16219 | 16231 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | 47143490 |
15 | NC_020795 | ATT | 4 | 16567 | 16579 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | 47143490 |
16 | NC_020795 | AAG | 5 | 16704 | 16718 | 15 | 66.67 % | 0 % | 33.33 % | 0 % | 6 % | 47143490 |
17 | NC_020795 | TCT | 4 | 17470 | 17480 | 11 | 0 % | 66.67 % | 0 % | 33.33 % | 9 % | 47143490 |
18 | NC_020795 | CTG | 7 | 17734 | 17754 | 21 | 0 % | 33.33 % | 33.33 % | 33.33 % | 9 % | 47143490 |
19 | NC_020795 | TGA | 4 | 19091 | 19101 | 11 | 33.33 % | 33.33 % | 33.33 % | 0 % | 9 % | Non-Coding |
20 | NC_020795 | TTA | 4 | 19570 | 19580 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 47143490 |
21 | NC_020795 | ATA | 4 | 22820 | 22830 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
22 | NC_020795 | AAT | 4 | 23037 | 23048 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143491 |
23 | NC_020795 | ATA | 4 | 29058 | 29068 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
24 | NC_020795 | TAG | 4 | 29733 | 29743 | 11 | 33.33 % | 33.33 % | 33.33 % | 0 % | 9 % | 47143491 |
25 | NC_020795 | ATA | 4 | 33093 | 33105 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | Non-Coding |
26 | NC_020795 | TAA | 4 | 34032 | 34042 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
27 | NC_020795 | AGA | 4 | 34174 | 34185 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 47143491 |
28 | NC_020795 | TCA | 4 | 35820 | 35831 | 12 | 33.33 % | 33.33 % | 0 % | 33.33 % | 8 % | 47143492 |
29 | NC_020795 | ATT | 4 | 38002 | 38013 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 47143492 |
30 | NC_020795 | AAG | 4 | 39039 | 39050 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 47143492 |
31 | NC_020795 | TAA | 4 | 41463 | 41474 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | Non-Coding |
32 | NC_020795 | AAG | 4 | 41977 | 41988 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 47143492 |
33 | NC_020795 | CCA | 4 | 42666 | 42677 | 12 | 33.33 % | 0 % | 0 % | 66.67 % | 8 % | 47143492 |
34 | NC_020795 | TAC | 4 | 42756 | 42766 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 47143492 |
35 | NC_020795 | ATC | 4 | 43598 | 43609 | 12 | 33.33 % | 33.33 % | 0 % | 33.33 % | 8 % | 47143492 |
36 | NC_020795 | AAT | 4 | 43996 | 44007 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143492 |
37 | NC_020795 | TGA | 4 | 44055 | 44065 | 11 | 33.33 % | 33.33 % | 33.33 % | 0 % | 9 % | 47143492 |
38 | NC_020795 | TCT | 4 | 45904 | 45915 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 47143493 |
39 | NC_020795 | AAC | 4 | 46630 | 46641 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | 47143493 |
40 | NC_020795 | AAT | 4 | 47974 | 47985 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143493 |
41 | NC_020795 | AAT | 4 | 48947 | 48958 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143493 |
42 | NC_020795 | TAT | 6 | 50512 | 50530 | 19 | 33.33 % | 66.67 % | 0 % | 0 % | 10 % | 47143493 |
43 | NC_020795 | CTT | 5 | 53909 | 53924 | 16 | 0 % | 66.67 % | 0 % | 33.33 % | 6 % | 47143493 |
44 | NC_020795 | ATA | 4 | 54015 | 54025 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
45 | NC_020795 | TAT | 4 | 54141 | 54151 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 47143493 |
46 | NC_020795 | TTA | 4 | 54736 | 54747 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | Non-Coding |
47 | NC_020795 | AAT | 4 | 54935 | 54946 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | Non-Coding |
48 | NC_020795 | AAT | 4 | 56099 | 56110 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143494 |
49 | NC_020795 | CCA | 4 | 56868 | 56879 | 12 | 33.33 % | 0 % | 0 % | 66.67 % | 8 % | 47143494 |
50 | NC_020795 | TAA | 4 | 57217 | 57229 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 47143494 |
51 | NC_020795 | TAT | 4 | 59154 | 59166 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | Non-Coding |
52 | NC_020795 | TTA | 4 | 59590 | 59601 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | Non-Coding |
53 | NC_020795 | TCT | 4 | 61947 | 61959 | 13 | 0 % | 66.67 % | 0 % | 33.33 % | 7 % | 47143494 |
54 | NC_020795 | ATT | 4 | 62194 | 62205 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 47143494 |
55 | NC_020795 | TAT | 4 | 63026 | 63036 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 47143494 |
56 | NC_020795 | TAA | 4 | 63520 | 63531 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143494 |
57 | NC_020795 | CTT | 4 | 68020 | 68030 | 11 | 0 % | 66.67 % | 0 % | 33.33 % | 9 % | 47143495 |
58 | NC_020795 | TAG | 6 | 68200 | 68217 | 18 | 33.33 % | 33.33 % | 33.33 % | 0 % | 5 % | 47143495 |
59 | NC_020795 | TCA | 4 | 68565 | 68576 | 12 | 33.33 % | 33.33 % | 0 % | 33.33 % | 0 % | 47143495 |
60 | NC_020795 | ATA | 4 | 68632 | 68642 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 47143495 |
61 | NC_020795 | CAG | 4 | 68668 | 68679 | 12 | 33.33 % | 0 % | 33.33 % | 33.33 % | 8 % | 47143495 |
62 | NC_020795 | ATT | 4 | 70857 | 70867 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 47143495 |
63 | NC_020795 | TAT | 4 | 73234 | 73244 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 47143496 |
64 | NC_020795 | ATT | 4 | 74006 | 74017 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 0 % | 47143496 |
65 | NC_020795 | AAT | 4 | 74047 | 74057 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 47143496 |
66 | NC_020795 | CTT | 4 | 74178 | 74189 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 47143496 |
67 | NC_020795 | CAA | 4 | 76691 | 76702 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | 47143496 |
68 | NC_020795 | AAT | 4 | 77541 | 77551 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 47143496 |
69 | NC_020795 | TAT | 4 | 78545 | 78556 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 47143497 |
70 | NC_020795 | TAT | 4 | 79372 | 79383 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 47143497 |
71 | NC_020795 | TAT | 4 | 79460 | 79471 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 47143497 |
72 | NC_020795 | GTT | 4 | 81352 | 81363 | 12 | 0 % | 66.67 % | 33.33 % | 0 % | 8 % | 47143497 |
73 | NC_020795 | TTA | 4 | 84612 | 84622 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 47143498 |
74 | NC_020795 | ATC | 4 | 84802 | 84814 | 13 | 33.33 % | 33.33 % | 0 % | 33.33 % | 7 % | 47143498 |
75 | NC_020795 | ACC | 4 | 86453 | 86464 | 12 | 33.33 % | 0 % | 0 % | 66.67 % | 8 % | 47143498 |
76 | NC_020795 | TGT | 4 | 86558 | 86570 | 13 | 0 % | 66.67 % | 33.33 % | 0 % | 7 % | 47143498 |
77 | NC_020795 | TGT | 4 | 90290 | 90301 | 12 | 0 % | 66.67 % | 33.33 % | 0 % | 8 % | 47143498 |
78 | NC_020795 | ATT | 4 | 91329 | 91341 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | Non-Coding |
79 | NC_020795 | TTA | 4 | 92144 | 92155 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 47143498 |
80 | NC_020795 | TTA | 4 | 92766 | 92776 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 47143498 |
81 | NC_020795 | ATA | 5 | 95951 | 95964 | 14 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | Non-Coding |
82 | NC_020795 | AAT | 5 | 98512 | 98525 | 14 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | Non-Coding |
83 | NC_020795 | AGT | 4 | 100150 | 100161 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 47143500 |
84 | NC_020795 | TAT | 4 | 100270 | 100282 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | Non-Coding |
85 | NC_020795 | TTA | 4 | 100352 | 100363 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | Non-Coding |
86 | NC_020795 | TAT | 5 | 103636 | 103650 | 15 | 33.33 % | 66.67 % | 0 % | 0 % | 6 % | Non-Coding |
87 | NC_020795 | TGT | 4 | 110524 | 110535 | 12 | 0 % | 66.67 % | 33.33 % | 0 % | 8 % | 47143501 |
88 | NC_020795 | ATT | 4 | 110592 | 110603 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | Non-Coding |
89 | NC_020795 | ATA | 4 | 111491 | 111502 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | Non-Coding |
90 | NC_020795 | ATA | 4 | 112184 | 112196 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 47143501 |
91 | NC_020795 | TAA | 4 | 113254 | 113265 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143501 |
92 | NC_020795 | TAA | 4 | 113851 | 113862 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143501 |
93 | NC_020795 | AAT | 4 | 114556 | 114566 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
94 | NC_020795 | GTA | 4 | 117517 | 117527 | 11 | 33.33 % | 33.33 % | 33.33 % | 0 % | 9 % | 47143501 |
95 | NC_020795 | AAG | 4 | 119183 | 119193 | 11 | 66.67 % | 0 % | 33.33 % | 0 % | 9 % | 47143501 |
96 | NC_020795 | AAG | 4 | 122322 | 122334 | 13 | 66.67 % | 0 % | 33.33 % | 0 % | 7 % | 47143501 |
97 | NC_020795 | TCT | 4 | 122423 | 122434 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 47143501 |
98 | NC_020795 | ATA | 4 | 124069 | 124079 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 47143501 |
99 | NC_020795 | AAT | 4 | 125081 | 125092 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143502 |
100 | NC_020795 | CTT | 4 | 127393 | 127404 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 47143502 |
101 | NC_020795 | GTT | 4 | 129119 | 129130 | 12 | 0 % | 66.67 % | 33.33 % | 0 % | 8 % | 47143502 |
102 | NC_020795 | TAA | 4 | 130608 | 130619 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143502 |
103 | NC_020795 | TCT | 4 | 132368 | 132379 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 47143502 |
104 | NC_020795 | AAT | 4 | 132414 | 132426 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 47143502 |
105 | NC_020795 | TAG | 4 | 133033 | 133043 | 11 | 33.33 % | 33.33 % | 33.33 % | 0 % | 9 % | 47143502 |
106 | NC_020795 | AAT | 4 | 133374 | 133384 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 47143502 |
107 | NC_020795 | TAA | 4 | 133562 | 133574 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 47143502 |
108 | NC_020795 | ATT | 4 | 135552 | 135563 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 47143503 |
109 | NC_020795 | ATT | 7 | 136304 | 136324 | 21 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 47143503 |
110 | NC_020795 | TAT | 4 | 140941 | 140951 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 47143503 |
111 | NC_020795 | TAT | 4 | 141385 | 141397 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | Non-Coding |
112 | NC_020795 | ACT | 4 | 145341 | 145351 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 47143504 |
113 | NC_020795 | ATT | 4 | 151191 | 151203 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | 47143505 |
114 | NC_020795 | ATT | 4 | 154090 | 154101 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 47143505 |
115 | NC_020795 | ATA | 4 | 154134 | 154145 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143505 |
116 | NC_020795 | ATA | 4 | 154817 | 154828 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 0 % | 47143505 |
117 | NC_020795 | TGC | 4 | 155687 | 155698 | 12 | 0 % | 33.33 % | 33.33 % | 33.33 % | 8 % | 47143505 |
118 | NC_020795 | TTA | 4 | 157298 | 157308 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | Non-Coding |
119 | NC_020795 | TAA | 4 | 157349 | 157360 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | Non-Coding |
120 | NC_020795 | GCT | 4 | 157925 | 157936 | 12 | 0 % | 33.33 % | 33.33 % | 33.33 % | 8 % | 47143506 |
121 | NC_020795 | TAA | 4 | 159303 | 159314 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143506 |
122 | NC_020795 | GTG | 5 | 162315 | 162328 | 14 | 0 % | 33.33 % | 66.67 % | 0 % | 7 % | 47143506 |
123 | NC_020795 | ATT | 4 | 164529 | 164540 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 47143506 |
124 | NC_020795 | ATT | 4 | 165386 | 165396 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | Non-Coding |
125 | NC_020795 | ATA | 4 | 165974 | 165984 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
126 | NC_020795 | TAT | 4 | 166644 | 166654 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | Non-Coding |
127 | NC_020795 | AAT | 4 | 171076 | 171087 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 47143507 |
128 | NC_020795 | ACA | 4 | 174269 | 174280 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | 47143507 |
129 | NC_020795 | AAT | 5 | 174381 | 174395 | 15 | 66.67 % | 33.33 % | 0 % | 0 % | 6 % | 47143507 |
130 | NC_020795 | ATA | 4 | 174817 | 174827 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 47143507 |
131 | NC_020795 | ATA | 4 | 176320 | 176330 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
132 | NC_020795 | AAT | 4 | 177185 | 177195 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
133 | NC_020795 | CTA | 4 | 178281 | 178291 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 47143508 |
134 | NC_020795 | TTC | 4 | 179120 | 179131 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 47143508 |
135 | NC_020795 | CTG | 4 | 179209 | 179220 | 12 | 0 % | 33.33 % | 33.33 % | 33.33 % | 8 % | 47143508 |
136 | NC_020795 | TAG | 4 | 179554 | 179565 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 47143508 |