Tetra-nucleotide Imperfect Repeats of Quercus rubra plastid
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_020152 | TAAA | 4 | 237 | 252 | 16 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 2 | NC_020152 | AAGT | 3 | 1238 | 1248 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 44326728 |
| 3 | NC_020152 | CATT | 3 | 2781 | 2792 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 44326728 |
| 4 | NC_020152 | AAAC | 3 | 6466 | 6478 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 44326728 |
| 5 | NC_020152 | TCAA | 3 | 7377 | 7388 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 6 | NC_020152 | ATCT | 3 | 9101 | 9111 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 7 | NC_020152 | TTCT | 3 | 9186 | 9197 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 44326729 |
| 8 | NC_020152 | ATAA | 3 | 9254 | 9264 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 44326729 |
| 9 | NC_020152 | AAAT | 3 | 9894 | 9906 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | Non-Coding |
| 10 | NC_020152 | TAAA | 3 | 10296 | 10307 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 11 | NC_020152 | TTTA | 3 | 10320 | 10331 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 12 | NC_020152 | GAAT | 3 | 21050 | 21060 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 44326729 |
| 13 | NC_020152 | TTCA | 3 | 24787 | 24798 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 44326729 |
| 14 | NC_020152 | CCTA | 3 | 26741 | 26751 | 11 | 25 % | 25 % | 0 % | 50 % | 9 % | 44326729 |
| 15 | NC_020152 | TTTG | 4 | 30750 | 30765 | 16 | 0 % | 75 % | 25 % | 0 % | 6 % | Non-Coding |
| 16 | NC_020152 | AAGA | 3 | 33227 | 33238 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 17 | NC_020152 | ATAA | 5 | 33694 | 33714 | 21 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 18 | NC_020152 | TTCA | 5 | 35021 | 35040 | 20 | 25 % | 50 % | 0 % | 25 % | 5 % | Non-Coding |
| 19 | NC_020152 | ATTT | 5 | 35878 | 35897 | 20 | 25 % | 75 % | 0 % | 0 % | 10 % | Non-Coding |
| 20 | NC_020152 | TGAA | 3 | 36020 | 36030 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 21 | NC_020152 | GAAA | 3 | 38737 | 38748 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 44326730 |
| 22 | NC_020152 | TTGC | 3 | 39138 | 39148 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 44326730 |
| 23 | NC_020152 | TAAT | 3 | 40839 | 40850 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 24 | NC_020152 | AATG | 3 | 45099 | 45110 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 44326730 |
| 25 | NC_020152 | TACT | 3 | 47063 | 47073 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 26 | NC_020152 | ATTT | 3 | 49463 | 49474 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 27 | NC_020152 | ATTT | 3 | 51601 | 51611 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 28 | NC_020152 | AATA | 3 | 52505 | 52516 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 29 | NC_020152 | TTTA | 3 | 52998 | 53009 | 12 | 25 % | 75 % | 0 % | 0 % | 0 % | Non-Coding |
| 30 | NC_020152 | GTCT | 3 | 55604 | 55615 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 44326731 |
| 31 | NC_020152 | TATT | 3 | 57766 | 57777 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 32 | NC_020152 | TGCA | 3 | 61456 | 61468 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 44326731 |
| 33 | NC_020152 | TTCC | 3 | 64385 | 64395 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | Non-Coding |
| 34 | NC_020152 | CTTT | 3 | 67576 | 67586 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 44326732 |
| 35 | NC_020152 | CTTT | 4 | 70541 | 70555 | 15 | 0 % | 75 % | 0 % | 25 % | 6 % | Non-Coding |
| 36 | NC_020152 | TGTT | 3 | 70802 | 70812 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | Non-Coding |
| 37 | NC_020152 | AGTA | 3 | 70866 | 70876 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 38 | NC_020152 | GGGC | 3 | 70999 | 71009 | 11 | 0 % | 0 % | 75 % | 25 % | 9 % | Non-Coding |
| 39 | NC_020152 | TTAA | 3 | 72061 | 72072 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 44326732 |
| 40 | NC_020152 | ATTA | 5 | 72663 | 72681 | 19 | 50 % | 50 % | 0 % | 0 % | 5 % | Non-Coding |
| 41 | NC_020152 | TGAA | 3 | 74872 | 74883 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 42 | NC_020152 | ATTT | 3 | 75032 | 75042 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 43 | NC_020152 | TTAT | 3 | 75975 | 75985 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 44326728 |
| 44 | NC_020152 | TTTA | 4 | 76511 | 76526 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | 44326728 |
| 45 | NC_020152 | TTTA | 3 | 83118 | 83128 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 44326728 |
| 46 | NC_020152 | ATTT | 3 | 85781 | 85792 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 44326728 |
| 47 | NC_020152 | CTTT | 3 | 86690 | 86700 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 44326728 |
| 48 | NC_020152 | TAGT | 3 | 88766 | 88776 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 44326728 |
| 49 | NC_020152 | CAAT | 3 | 89075 | 89085 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 44326728 |
| 50 | NC_020152 | TTCT | 3 | 94237 | 94247 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 44326728 |
| 51 | NC_020152 | CTTT | 3 | 95427 | 95437 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 44326728 |
| 52 | NC_020152 | TGAT | 3 | 97258 | 97270 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 44326728 |
| 53 | NC_020152 | TGAT | 3 | 97300 | 97312 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 44326728 |
| 54 | NC_020152 | AATA | 3 | 98114 | 98126 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 44326728 |
| 55 | NC_020152 | AAAT | 3 | 99899 | 99909 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 44326728 |
| 56 | NC_020152 | AGAT | 3 | 102588 | 102598 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 44326728 |
| 57 | NC_020152 | ATTT | 3 | 104946 | 104957 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 44326733 |
| 58 | NC_020152 | ATCC | 3 | 108830 | 108841 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 44326733 |
| 59 | NC_020152 | AAGG | 3 | 109369 | 109379 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 44326733 |
| 60 | NC_020152 | GAGG | 3 | 112084 | 112095 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 44326733 |
| 61 | NC_020152 | AGGT | 3 | 112296 | 112307 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 44326733 |
| 62 | NC_020152 | TAAG | 3 | 113416 | 113426 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 44326733 |
| 63 | NC_020152 | TAAA | 3 | 116401 | 116412 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 44326733 |
| 64 | NC_020152 | AAAT | 3 | 118001 | 118011 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 44326733 |
| 65 | NC_020152 | AAAT | 4 | 119780 | 119795 | 16 | 75 % | 25 % | 0 % | 0 % | 0 % | 44326733 |
| 66 | NC_020152 | TTAT | 3 | 120564 | 120574 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 44326733 |
| 67 | NC_020152 | ATTT | 3 | 120763 | 120775 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | 44326733 |
| 68 | NC_020152 | ATTT | 3 | 122448 | 122458 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 44326733 |
| 69 | NC_020152 | TTAA | 3 | 125775 | 125787 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 44326733 |
| 70 | NC_020152 | ATTA | 3 | 127470 | 127480 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 44326733 |
| 71 | NC_020152 | AATC | 3 | 127980 | 127991 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 44326733 |
| 72 | NC_020152 | TTAA | 3 | 128147 | 128158 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 44326733 |
| 73 | NC_020152 | GAAT | 3 | 128162 | 128172 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 44326733 |
| 74 | NC_020152 | TCAA | 3 | 130544 | 130554 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 44326733 |
| 75 | NC_020152 | AAGA | 3 | 132742 | 132753 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 44326733 |
| 76 | NC_020152 | AAGT | 3 | 132842 | 132854 | 13 | 50 % | 25 % | 25 % | 0 % | 7 % | 44326733 |
| 77 | NC_020152 | AAAG | 3 | 134240 | 134251 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 44326733 |
| 78 | NC_020152 | AAAT | 3 | 134746 | 134757 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 44326733 |
| 79 | NC_020152 | CTTA | 3 | 138420 | 138430 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 44326733 |
| 80 | NC_020152 | GGAT | 3 | 143005 | 143016 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 44326733 |
| 81 | NC_020152 | AAAT | 3 | 146889 | 146900 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 44326733 |
| 82 | NC_020152 | TATT | 3 | 151936 | 151946 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 44326737 |
| 83 | NC_020152 | AAAG | 3 | 156409 | 156419 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 44326737 |
| 84 | NC_020152 | GTAA | 3 | 157440 | 157451 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 44326737 |
| 85 | NC_020152 | TATT | 3 | 157471 | 157482 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 44326737 |