Tetra-nucleotide Imperfect Repeats of Camellia sinensis chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_020019 | AAGT | 3 | 1159 | 1169 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 43585635 |
| 2 | NC_020019 | AGAA | 3 | 3329 | 3339 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 43585635 |
| 3 | NC_020019 | AAAT | 4 | 4343 | 4358 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | Non-Coding |
| 4 | NC_020019 | CTTT | 3 | 5459 | 5469 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 43585635 |
| 5 | NC_020019 | AAAT | 4 | 6416 | 6431 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | Non-Coding |
| 6 | NC_020019 | AGAT | 3 | 6710 | 6721 | 12 | 50 % | 25 % | 25 % | 0 % | 0 % | Non-Coding |
| 7 | NC_020019 | ATAA | 3 | 6762 | 6773 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 8 | NC_020019 | CTAA | 3 | 7500 | 7511 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 9 | NC_020019 | TTCT | 3 | 8845 | 8856 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 43585635 |
| 10 | NC_020019 | CCTT | 3 | 9492 | 9503 | 12 | 0 % | 50 % | 0 % | 50 % | 8 % | Non-Coding |
| 11 | NC_020019 | TTTA | 3 | 9660 | 9671 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 12 | NC_020019 | GAAC | 3 | 10283 | 10294 | 12 | 50 % | 0 % | 25 % | 25 % | 8 % | Non-Coding |
| 13 | NC_020019 | GTCT | 3 | 12021 | 12032 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | 43585635 |
| 14 | NC_020019 | TTTC | 3 | 13278 | 13288 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 43585635 |
| 15 | NC_020019 | ACAT | 3 | 13324 | 13334 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 43585635 |
| 16 | NC_020019 | ATTT | 3 | 15207 | 15217 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 17 | NC_020019 | CATT | 3 | 27813 | 27824 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 43585636 |
| 18 | NC_020019 | TTCA | 3 | 27876 | 27886 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 19 | NC_020019 | TTTC | 3 | 30276 | 30287 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 20 | NC_020019 | AAAT | 3 | 31514 | 31524 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 21 | NC_020019 | AAAT | 3 | 31676 | 31688 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | Non-Coding |
| 22 | NC_020019 | GAAA | 3 | 36195 | 36206 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 43585636 |
| 23 | NC_020019 | TTTC | 3 | 37276 | 37286 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 24 | NC_020019 | AATG | 3 | 42057 | 42068 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 43585637 |
| 25 | NC_020019 | TTTC | 6 | 45288 | 45311 | 24 | 0 % | 75 % | 0 % | 25 % | 8 % | 43585637 |
| 26 | NC_020019 | AAAG | 3 | 49591 | 49601 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 27 | NC_020019 | CTTT | 3 | 50556 | 50567 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 28 | NC_020019 | AAAT | 3 | 52952 | 52962 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 43585637 |
| 29 | NC_020019 | GTTT | 3 | 53153 | 53165 | 13 | 0 % | 75 % | 25 % | 0 % | 7 % | Non-Coding |
| 30 | NC_020019 | ATTT | 3 | 54360 | 54370 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 31 | NC_020019 | TGCA | 3 | 58023 | 58035 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 43585638 |
| 32 | NC_020019 | CAAA | 3 | 61465 | 61476 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 43585638 |
| 33 | NC_020019 | TCAG | 3 | 62280 | 62291 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | 43585638 |
| 34 | NC_020019 | AAAT | 3 | 62708 | 62719 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 35 | NC_020019 | GAAA | 3 | 64672 | 64684 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 43585638 |
| 36 | NC_020019 | AGAA | 3 | 66104 | 66115 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 37 | NC_020019 | CTTG | 3 | 67286 | 67296 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | Non-Coding |
| 38 | NC_020019 | AAAG | 3 | 67620 | 67630 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 39 | NC_020019 | TACA | 3 | 70318 | 70329 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 43585639 |
| 40 | NC_020019 | AAAC | 3 | 70517 | 70529 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | Non-Coding |
| 41 | NC_020019 | TGAA | 3 | 71452 | 71463 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 43585639 |
| 42 | NC_020019 | TTTC | 3 | 71486 | 71498 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | Non-Coding |
| 43 | NC_020019 | TTTC | 3 | 71609 | 71619 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 44 | NC_020019 | TTTA | 5 | 72988 | 73006 | 19 | 25 % | 75 % | 0 % | 0 % | 10 % | 43585635 |
| 45 | NC_020019 | GGTT | 3 | 75937 | 75948 | 12 | 0 % | 50 % | 50 % | 0 % | 8 % | 43585635 |
| 46 | NC_020019 | TTTC | 3 | 77608 | 77618 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 43585635 |
| 47 | NC_020019 | TTTC | 4 | 84854 | 84869 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | 43585635 |
| 48 | NC_020019 | CAAT | 3 | 85322 | 85332 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 43585635 |
| 49 | NC_020019 | TTTA | 3 | 86395 | 86405 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 43585635 |
| 50 | NC_020019 | TTCT | 3 | 90347 | 90357 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 43585635 |
| 51 | NC_020019 | ATCG | 3 | 91111 | 91123 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 43585635 |
| 52 | NC_020019 | CTTT | 3 | 91540 | 91550 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 43585635 |
| 53 | NC_020019 | AATA | 3 | 94305 | 94317 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 43585635 |
| 54 | NC_020019 | TCTA | 3 | 94673 | 94684 | 12 | 25 % | 50 % | 0 % | 25 % | 0 % | 43585635 |
| 55 | NC_020019 | ATCC | 3 | 105192 | 105203 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 43585639 |
| 56 | NC_020019 | TCTA | 3 | 105584 | 105595 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 43585639 |
| 57 | NC_020019 | AAGG | 3 | 105729 | 105739 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 43585639 |
| 58 | NC_020019 | GAGG | 3 | 108454 | 108465 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 43585639 |
| 59 | NC_020019 | AGGT | 3 | 108666 | 108677 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 43585639 |
| 60 | NC_020019 | TAAG | 3 | 109786 | 109796 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 43585639 |
| 61 | NC_020019 | CCCT | 4 | 110117 | 110132 | 16 | 0 % | 25 % | 0 % | 75 % | 6 % | 43585639 |
| 62 | NC_020019 | TTCT | 3 | 116202 | 116212 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 43585639 |
| 63 | NC_020019 | AGAT | 3 | 116900 | 116912 | 13 | 50 % | 25 % | 25 % | 0 % | 7 % | 43585639 |
| 64 | NC_020019 | AAAT | 3 | 117800 | 117810 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 43585639 |
| 65 | NC_020019 | GAAA | 3 | 118241 | 118252 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 43585639 |
| 66 | NC_020019 | TTTC | 3 | 123379 | 123390 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 43585639 |
| 67 | NC_020019 | GAAT | 3 | 123875 | 123885 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 43585639 |
| 68 | NC_020019 | GAAA | 3 | 123940 | 123952 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 43585639 |
| 69 | NC_020019 | AAGA | 3 | 128382 | 128393 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 43585639 |
| 70 | NC_020019 | ATTT | 3 | 129047 | 129058 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 43585639 |
| 71 | NC_020019 | AGGG | 3 | 133615 | 133630 | 16 | 25 % | 0 % | 75 % | 0 % | 6 % | 43585639 |
| 72 | NC_020019 | CTTA | 3 | 133951 | 133961 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 43585639 |
| 73 | NC_020019 | GGAT | 3 | 138544 | 138555 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 43585639 |
| 74 | NC_020019 | AAAT | 3 | 142386 | 142397 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 43585639 |
| 75 | NC_020019 | ATAG | 3 | 149062 | 149073 | 12 | 50 % | 25 % | 25 % | 0 % | 0 % | 43585643 |
| 76 | NC_020019 | TATT | 3 | 149430 | 149442 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | 43585643 |
| 77 | NC_020019 | TGAT | 3 | 150462 | 150474 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 43585643 |
| 78 | NC_020019 | AAAG | 3 | 152197 | 152207 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 43585643 |
| 79 | NC_020019 | CGAT | 3 | 152624 | 152636 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 43585643 |
| 80 | NC_020019 | ATTT | 3 | 153263 | 153274 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 43585643 |