Tetra-nucleotide Imperfect Repeats of Gossypium incanum chloroplast
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| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_018109 | ATTC | 3 | 152 | 162 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 2 | NC_018109 | AAGT | 3 | 1121 | 1131 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 39483060 |
| 3 | NC_018109 | AAAT | 3 | 2030 | 2041 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 4 | NC_018109 | GATG | 3 | 3163 | 3175 | 13 | 25 % | 25 % | 50 % | 0 % | 7 % | 39483060 |
| 5 | NC_018109 | ATCT | 3 | 4671 | 4682 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 6 | NC_018109 | TTCA | 3 | 4917 | 4928 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 7 | NC_018109 | AAAT | 4 | 6439 | 6454 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | Non-Coding |
| 8 | NC_018109 | TTTA | 3 | 6524 | 6535 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 9 | NC_018109 | ATAG | 3 | 8315 | 8326 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 10 | NC_018109 | ATTT | 3 | 8579 | 8590 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 11 | NC_018109 | AATC | 3 | 8661 | 8671 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 12 | NC_018109 | AAAT | 3 | 12506 | 12516 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 39483068 |
| 13 | NC_018109 | TTTC | 3 | 12590 | 12601 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 39483068 |
| 14 | NC_018109 | TCTA | 3 | 13381 | 13392 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 15 | NC_018109 | AAAT | 3 | 13998 | 14009 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 16 | NC_018109 | TTTA | 4 | 14601 | 14615 | 15 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 17 | NC_018109 | TTTA | 3 | 23198 | 23209 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 39483061 |
| 18 | NC_018109 | GATA | 3 | 27028 | 27038 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 39483061 |
| 19 | NC_018109 | CTAA | 3 | 28840 | 28851 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 20 | NC_018109 | GAAA | 3 | 31169 | 31180 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 21 | NC_018109 | ATCA | 3 | 31369 | 31379 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 22 | NC_018109 | TTCA | 4 | 32208 | 32223 | 16 | 25 % | 50 % | 0 % | 25 % | 6 % | Non-Coding |
| 23 | NC_018109 | AATA | 3 | 33226 | 33237 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 24 | NC_018109 | TCTT | 3 | 33304 | 33316 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | Non-Coding |
| 25 | NC_018109 | GTTT | 3 | 33642 | 33653 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | Non-Coding |
| 26 | NC_018109 | GAAA | 3 | 35632 | 35643 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 39483062 |
| 27 | NC_018109 | TTGC | 3 | 36033 | 36043 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 39483062 |
| 28 | NC_018109 | ATCT | 3 | 37036 | 37047 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 29 | NC_018109 | AAAT | 3 | 37100 | 37111 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 30 | NC_018109 | TGAA | 4 | 37651 | 37665 | 15 | 50 % | 25 % | 25 % | 0 % | 6 % | Non-Coding |
| 31 | NC_018109 | AATT | 3 | 37712 | 37722 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | Non-Coding |
| 32 | NC_018109 | CTAA | 3 | 37757 | 37769 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | Non-Coding |
| 33 | NC_018109 | AAAT | 3 | 37960 | 37972 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | Non-Coding |
| 34 | NC_018109 | GATC | 3 | 38551 | 38561 | 11 | 25 % | 25 % | 25 % | 25 % | 9 % | Non-Coding |
| 35 | NC_018109 | AATG | 3 | 41898 | 41909 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 39483062 |
| 36 | NC_018109 | ATCT | 4 | 43622 | 43637 | 16 | 25 % | 50 % | 0 % | 25 % | 6 % | Non-Coding |
| 37 | NC_018109 | GTAA | 3 | 46321 | 46331 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 39483062 |
| 38 | NC_018109 | TAAA | 4 | 48006 | 48021 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | Non-Coding |
| 39 | NC_018109 | AAAG | 3 | 49144 | 49155 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 40 | NC_018109 | CATA | 3 | 50475 | 50485 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 41 | NC_018109 | ACAT | 3 | 50769 | 50779 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 42 | NC_018109 | CAAA | 3 | 51891 | 51902 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 39483063 |
| 43 | NC_018109 | GTCT | 3 | 52502 | 52513 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 39483063 |
| 44 | NC_018109 | GTTT | 3 | 53267 | 53279 | 13 | 0 % | 75 % | 25 % | 0 % | 7 % | Non-Coding |
| 45 | NC_018109 | GATT | 3 | 53305 | 53316 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | Non-Coding |
| 46 | NC_018109 | ATTT | 3 | 53516 | 53527 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 47 | NC_018109 | AGAA | 3 | 54102 | 54113 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 48 | NC_018109 | AAAG | 3 | 59871 | 59881 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 49 | NC_018109 | ATTT | 3 | 61593 | 61604 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 50 | NC_018109 | TAGT | 3 | 61617 | 61628 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | Non-Coding |
| 51 | NC_018109 | TCTA | 3 | 62641 | 62652 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 52 | NC_018109 | CTTT | 3 | 65091 | 65102 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 53 | NC_018109 | TTTC | 3 | 66448 | 66458 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 54 | NC_018109 | ATTT | 5 | 69444 | 69464 | 21 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 55 | NC_018109 | TAAA | 3 | 71061 | 71072 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 39483064 |
| 56 | NC_018109 | TCAT | 3 | 72594 | 72605 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 57 | NC_018109 | GAAC | 3 | 72937 | 72948 | 12 | 50 % | 0 % | 25 % | 25 % | 8 % | Non-Coding |
| 58 | NC_018109 | TTTA | 3 | 73868 | 73879 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 39483067 |
| 59 | NC_018109 | TGAA | 3 | 75684 | 75694 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 39483067 |
| 60 | NC_018109 | TTGA | 3 | 80730 | 80742 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 39483067 |
| 61 | NC_018109 | TTTC | 3 | 81665 | 81675 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 39483067 |
| 62 | NC_018109 | CTTT | 3 | 83594 | 83604 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 39483067 |
| 63 | NC_018109 | TTTC | 3 | 85928 | 85939 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 39483067 |
| 64 | NC_018109 | ATTT | 3 | 86275 | 86286 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 39483067 |
| 65 | NC_018109 | AATT | 3 | 86775 | 86785 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 39483067 |
| 66 | NC_018109 | TTAT | 3 | 86912 | 86923 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 39483067 |
| 67 | NC_018109 | AATT | 3 | 87554 | 87565 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 39483067 |
| 68 | NC_018109 | TTCT | 3 | 91556 | 91566 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 39483067 |
| 69 | NC_018109 | ATCG | 3 | 92314 | 92326 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 39483067 |
| 70 | NC_018109 | CTTT | 3 | 92743 | 92753 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 39483067 |
| 71 | NC_018109 | TGAT | 3 | 94625 | 94637 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 39483067 |
| 72 | NC_018109 | AATA | 3 | 95508 | 95520 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 39483067 |
| 73 | NC_018109 | TCTA | 3 | 107197 | 107208 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 39483069 |
| 74 | NC_018109 | AAGG | 3 | 107346 | 107356 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 39483069 |
| 75 | NC_018109 | GAGG | 3 | 110070 | 110081 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 39483069 |
| 76 | NC_018109 | AGGT | 3 | 110282 | 110293 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 39483069 |
| 77 | NC_018109 | TAAG | 3 | 111402 | 111412 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 39483069 |
| 78 | NC_018109 | AACA | 3 | 115175 | 115186 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 39483069 |
| 79 | NC_018109 | TCTT | 3 | 115572 | 115583 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 39483069 |
| 80 | NC_018109 | AGTT | 3 | 117016 | 117026 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 39483069 |
| 81 | NC_018109 | GAAT | 3 | 117174 | 117185 | 12 | 50 % | 25 % | 25 % | 0 % | 0 % | 39483069 |
| 82 | NC_018109 | ATTA | 3 | 117337 | 117348 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 39483069 |
| 83 | NC_018109 | CAAA | 3 | 123956 | 123966 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | 39483069 |
| 84 | NC_018109 | ATCA | 3 | 125201 | 125212 | 12 | 50 % | 25 % | 0 % | 25 % | 0 % | 39483069 |
| 85 | NC_018109 | TCTT | 3 | 127429 | 127439 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 39483069 |
| 86 | NC_018109 | ATTT | 3 | 128974 | 128986 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | 39483069 |
| 87 | NC_018109 | AACA | 3 | 130282 | 130293 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 39483069 |
| 88 | NC_018109 | ATTT | 3 | 131955 | 131965 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 39483069 |
| 89 | NC_018109 | ATTT | 3 | 132928 | 132940 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | 39483069 |
| 90 | NC_018109 | AATT | 3 | 133562 | 133572 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 39483069 |
| 91 | NC_018109 | CTTA | 3 | 135673 | 135683 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 39483069 |
| 92 | NC_018109 | CCTT | 3 | 139729 | 139739 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 39483069 |
| 93 | NC_018109 | GGAT | 3 | 140272 | 140283 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 39483069 |
| 94 | NC_018109 | AATA | 4 | 144186 | 144201 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | 39483069 |
| 95 | NC_018109 | TTTC | 3 | 148814 | 148825 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 96 | NC_018109 | ATCA | 3 | 152490 | 152502 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 39483068 |
| 97 | NC_018109 | TGAT | 3 | 152585 | 152597 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 39483068 |
| 98 | NC_018109 | AAAG | 3 | 154332 | 154342 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 39483068 |
| 99 | NC_018109 | CGAT | 3 | 154759 | 154771 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 39483068 |
| 100 | NC_018109 | TATT | 3 | 155391 | 155402 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 39483068 |