Tetra-nucleotide Imperfect Repeats of Oryza rufipogon chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_017835 | AAGT | 3 | 781 | 791 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 38679915 |
| 2 | NC_017835 | CATT | 3 | 3700 | 3711 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 3 | NC_017835 | TAAA | 4 | 4153 | 4168 | 16 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 4 | NC_017835 | TTTA | 3 | 4467 | 4478 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 5 | NC_017835 | ATAA | 3 | 5330 | 5340 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 6 | NC_017835 | CTTA | 3 | 5376 | 5388 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | Non-Coding |
| 7 | NC_017835 | TTCT | 3 | 8040 | 8050 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 8 | NC_017835 | TTTA | 3 | 8211 | 8221 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 9 | NC_017835 | GAAA | 3 | 10364 | 10375 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 38679915 |
| 10 | NC_017835 | CCCA | 3 | 12774 | 12785 | 12 | 25 % | 0 % | 0 % | 75 % | 8 % | Non-Coding |
| 11 | NC_017835 | TTTG | 3 | 13536 | 13546 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | Non-Coding |
| 12 | NC_017835 | CTTT | 3 | 15218 | 15229 | 12 | 0 % | 75 % | 0 % | 25 % | 0 % | Non-Coding |
| 13 | NC_017835 | GTAT | 3 | 16135 | 16145 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
| 14 | NC_017835 | TTTC | 3 | 17001 | 17011 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 15 | NC_017835 | AAAG | 3 | 17095 | 17106 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 16 | NC_017835 | TTTC | 3 | 19811 | 19823 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 38679916 |
| 17 | NC_017835 | GCGA | 3 | 28852 | 28864 | 13 | 25 % | 0 % | 50 % | 25 % | 7 % | 38679916 |
| 18 | NC_017835 | TTAA | 3 | 29370 | 29381 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 19 | NC_017835 | GAAA | 3 | 29463 | 29475 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | Non-Coding |
| 20 | NC_017835 | CTTT | 3 | 32315 | 32325 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 21 | NC_017835 | AAAG | 3 | 33602 | 33612 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 38679916 |
| 22 | NC_017835 | TTTC | 3 | 35945 | 35955 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 23 | NC_017835 | AAGA | 3 | 39232 | 39243 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 38679917 |
| 24 | NC_017835 | CTAG | 3 | 40175 | 40187 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 38679917 |
| 25 | NC_017835 | ATCA | 3 | 42187 | 42197 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 26 | NC_017835 | AAGA | 3 | 42340 | 42350 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 27 | NC_017835 | AACA | 3 | 44650 | 44660 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 28 | NC_017835 | TTGA | 3 | 46567 | 46579 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 29 | NC_017835 | CAGA | 3 | 48143 | 48153 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 38679917 |
| 30 | NC_017835 | TAGG | 4 | 51267 | 51282 | 16 | 25 % | 25 % | 50 % | 0 % | 6 % | Non-Coding |
| 31 | NC_017835 | AATT | 3 | 53410 | 53421 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 32 | NC_017835 | AATA | 4 | 55759 | 55775 | 17 | 75 % | 25 % | 0 % | 0 % | 5 % | Non-Coding |
| 33 | NC_017835 | AAAG | 3 | 56369 | 56379 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 34 | NC_017835 | TTCT | 3 | 59451 | 59462 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 35 | NC_017835 | ATTC | 3 | 59482 | 59492 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 36 | NC_017835 | TCTT | 3 | 60873 | 60883 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 37 | NC_017835 | TTCT | 3 | 63701 | 63712 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 38 | NC_017835 | GAAA | 3 | 64908 | 64918 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 39 | NC_017835 | TATT | 3 | 65061 | 65071 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 40 | NC_017835 | GAAA | 3 | 65388 | 65399 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 38679919 |
| 41 | NC_017835 | AGAA | 3 | 68357 | 68368 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | Non-Coding |
| 42 | NC_017835 | AAAG | 3 | 68496 | 68506 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 43 | NC_017835 | TTTA | 4 | 71705 | 71720 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 44 | NC_017835 | TTTC | 3 | 74271 | 74281 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 45 | NC_017835 | ATTT | 3 | 75938 | 75949 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 46 | NC_017835 | ATTT | 3 | 77217 | 77227 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 47 | NC_017835 | AATG | 3 | 81009 | 81019 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 48 | NC_017835 | TTCT | 3 | 88381 | 88391 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 38679921 |
| 49 | NC_017835 | AAAC | 3 | 93272 | 93284 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 38679921 |
| 50 | NC_017835 | ATCC | 3 | 93404 | 93415 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 38679921 |
| 51 | NC_017835 | CTAT | 3 | 93791 | 93802 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 52 | NC_017835 | ACGG | 3 | 96659 | 96670 | 12 | 25 % | 0 % | 50 % | 25 % | 8 % | Non-Coding |
| 53 | NC_017835 | AGGT | 3 | 96943 | 96954 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | Non-Coding |
| 54 | NC_017835 | AACG | 3 | 98268 | 98279 | 12 | 50 % | 0 % | 25 % | 25 % | 0 % | Non-Coding |
| 55 | NC_017835 | AAAG | 4 | 99599 | 99614 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | Non-Coding |
| 56 | NC_017835 | GAAT | 3 | 101208 | 101218 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 57 | NC_017835 | AAGG | 3 | 101220 | 101231 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | Non-Coding |
| 58 | NC_017835 | AATA | 3 | 103748 | 103759 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 59 | NC_017835 | CAAA | 3 | 104523 | 104534 | 12 | 75 % | 0 % | 0 % | 25 % | 0 % | 38679921 |
| 60 | NC_017835 | AAAT | 3 | 108648 | 108658 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 61 | NC_017835 | TAAC | 3 | 112084 | 112095 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 38679922 |
| 62 | NC_017835 | ATTC | 3 | 113922 | 113932 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 63 | NC_017835 | AAAT | 3 | 114337 | 114347 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 64 | NC_017835 | CTTT | 4 | 115526 | 115541 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | Non-Coding |
| 65 | NC_017835 | TCGT | 3 | 116860 | 116871 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | Non-Coding |
| 66 | NC_017835 | CTTA | 3 | 117067 | 117077 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 67 | NC_017835 | CCGT | 3 | 118470 | 118481 | 12 | 0 % | 25 % | 25 % | 50 % | 8 % | Non-Coding |
| 68 | NC_017835 | AGGA | 3 | 121502 | 121513 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 38679922 |
| 69 | NC_017835 | GGAT | 3 | 121725 | 121736 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 38679922 |
| 70 | NC_017835 | AGAA | 3 | 126748 | 126758 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 38679922 |
| 71 | NC_017835 | TGAA | 3 | 131319 | 131330 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 72 | NC_017835 | CTTT | 3 | 131337 | 131348 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 73 | NC_017835 | CATT | 3 | 134120 | 134130 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |