Tetra-nucleotide Imperfect Repeats of Gossypium herbaceum subsp. africanum chloroplast
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| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_016692 | AAGT | 3 | 1131 | 1141 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 37229146 |
| 2 | NC_016692 | AAAT | 3 | 2055 | 2066 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 3 | NC_016692 | ATCT | 3 | 4706 | 4717 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 4 | NC_016692 | TTCA | 3 | 4977 | 4988 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 5 | NC_016692 | AAAT | 4 | 6498 | 6513 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | Non-Coding |
| 6 | NC_016692 | TTTA | 3 | 6583 | 6594 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 7 | NC_016692 | ATAG | 3 | 8387 | 8398 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 8 | NC_016692 | ATTT | 3 | 8657 | 8668 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 9 | NC_016692 | AATC | 3 | 8745 | 8755 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 10 | NC_016692 | ATTT | 4 | 8848 | 8862 | 15 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 11 | NC_016692 | TCTA | 3 | 13496 | 13507 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 12 | NC_016692 | AAAT | 3 | 14118 | 14129 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 13 | NC_016692 | TTTA | 4 | 14748 | 14762 | 15 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 14 | NC_016692 | TTTA | 3 | 23426 | 23437 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 37229147 |
| 15 | NC_016692 | GATA | 3 | 27260 | 27270 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 37229147 |
| 16 | NC_016692 | CTAA | 3 | 29100 | 29111 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 17 | NC_016692 | GAAA | 3 | 31443 | 31454 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 18 | NC_016692 | ATCA | 3 | 31643 | 31653 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 19 | NC_016692 | TTCA | 4 | 32511 | 32526 | 16 | 25 % | 50 % | 0 % | 25 % | 6 % | Non-Coding |
| 20 | NC_016692 | AATA | 3 | 33558 | 33569 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 21 | NC_016692 | TCTT | 3 | 33631 | 33643 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | Non-Coding |
| 22 | NC_016692 | GTTT | 3 | 33969 | 33980 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | Non-Coding |
| 23 | NC_016692 | GAAA | 3 | 35957 | 35968 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 37229147 |
| 24 | NC_016692 | TTGC | 3 | 36358 | 36368 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 37229147 |
| 25 | NC_016692 | ATCT | 3 | 37377 | 37388 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 26 | NC_016692 | AAAT | 3 | 37441 | 37452 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 27 | NC_016692 | TGAA | 4 | 37992 | 38006 | 15 | 50 % | 25 % | 25 % | 0 % | 6 % | Non-Coding |
| 28 | NC_016692 | TAAT | 3 | 38389 | 38400 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 29 | NC_016692 | AAAT | 3 | 38419 | 38431 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | Non-Coding |
| 30 | NC_016692 | GATC | 3 | 39016 | 39026 | 11 | 25 % | 25 % | 25 % | 25 % | 9 % | Non-Coding |
| 31 | NC_016692 | AATG | 3 | 42363 | 42374 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 37229148 |
| 32 | NC_016692 | ATCT | 4 | 44087 | 44102 | 16 | 25 % | 50 % | 0 % | 25 % | 6 % | Non-Coding |
| 33 | NC_016692 | GTAA | 3 | 46870 | 46880 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 37229148 |
| 34 | NC_016692 | TTTG | 3 | 48384 | 48395 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | Non-Coding |
| 35 | NC_016692 | AAAG | 3 | 49736 | 49747 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 36 | NC_016692 | CATA | 3 | 51098 | 51108 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 37 | NC_016692 | ACAT | 3 | 51392 | 51402 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 38 | NC_016692 | CAAA | 3 | 52531 | 52542 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 37229148 |
| 39 | NC_016692 | GTCT | 3 | 53141 | 53152 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 37229148 |
| 40 | NC_016692 | GTTT | 3 | 53906 | 53918 | 13 | 0 % | 75 % | 25 % | 0 % | 7 % | Non-Coding |
| 41 | NC_016692 | GATT | 3 | 53944 | 53955 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | Non-Coding |
| 42 | NC_016692 | ATTT | 3 | 54280 | 54290 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 43 | NC_016692 | AATC | 5 | 54308 | 54326 | 19 | 50 % | 25 % | 0 % | 25 % | 10 % | Non-Coding |
| 44 | NC_016692 | AGAA | 3 | 54861 | 54872 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 45 | NC_016692 | AAAG | 3 | 60665 | 60675 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 46 | NC_016692 | ATTT | 3 | 62392 | 62403 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 47 | NC_016692 | TAGT | 3 | 62416 | 62427 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | Non-Coding |
| 48 | NC_016692 | TTTA | 3 | 62917 | 62929 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | Non-Coding |
| 49 | NC_016692 | TCTA | 3 | 63456 | 63467 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 50 | NC_016692 | TTTC | 3 | 67278 | 67288 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 51 | NC_016692 | TAAA | 3 | 71889 | 71900 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 37229150 |
| 52 | NC_016692 | TCAT | 3 | 73428 | 73439 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 53 | NC_016692 | GAAC | 3 | 73771 | 73782 | 12 | 50 % | 0 % | 25 % | 25 % | 8 % | Non-Coding |
| 54 | NC_016692 | TTTA | 3 | 74704 | 74715 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 37229153 |
| 55 | NC_016692 | TGAA | 3 | 76521 | 76531 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 37229153 |
| 56 | NC_016692 | TTGA | 3 | 81570 | 81582 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 37229153 |
| 57 | NC_016692 | TTTC | 3 | 82505 | 82515 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 37229153 |
| 58 | NC_016692 | CTTT | 3 | 84444 | 84454 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 37229153 |
| 59 | NC_016692 | TTAA | 3 | 86571 | 86582 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 37229153 |
| 60 | NC_016692 | TTTC | 3 | 86824 | 86835 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 37229153 |
| 61 | NC_016692 | AATT | 3 | 87670 | 87680 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 37229153 |
| 62 | NC_016692 | TTAT | 3 | 87807 | 87818 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 37229153 |
| 63 | NC_016692 | AATT | 3 | 88448 | 88459 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 37229153 |
| 64 | NC_016692 | TTCT | 3 | 92456 | 92466 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 37229153 |
| 65 | NC_016692 | ATCG | 3 | 93214 | 93226 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 37229153 |
| 66 | NC_016692 | CTTT | 3 | 93643 | 93653 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 37229153 |
| 67 | NC_016692 | TGAT | 3 | 95525 | 95537 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 37229153 |
| 68 | NC_016692 | AATA | 3 | 96408 | 96420 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 37229153 |
| 69 | NC_016692 | TCTA | 3 | 108132 | 108143 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 37229152 |
| 70 | NC_016692 | AAGG | 3 | 108281 | 108291 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 37229152 |
| 71 | NC_016692 | GAGG | 3 | 111022 | 111033 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 37229152 |
| 72 | NC_016692 | AGGT | 3 | 111234 | 111245 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 37229152 |
| 73 | NC_016692 | TAAG | 3 | 112354 | 112364 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 37229152 |
| 74 | NC_016692 | GAGG | 3 | 115140 | 115150 | 11 | 25 % | 0 % | 75 % | 0 % | 9 % | 37229152 |
| 75 | NC_016692 | TCTT | 3 | 116533 | 116544 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 37229152 |
| 76 | NC_016692 | AGTT | 3 | 117983 | 117993 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 37229152 |
| 77 | NC_016692 | GAAT | 3 | 118141 | 118152 | 12 | 50 % | 25 % | 25 % | 0 % | 0 % | 37229152 |
| 78 | NC_016692 | ATTA | 3 | 118304 | 118315 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 37229152 |
| 79 | NC_016692 | AAAG | 3 | 124121 | 124132 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 37229152 |
| 80 | NC_016692 | CAAA | 3 | 124941 | 124951 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | 37229152 |
| 81 | NC_016692 | ATCA | 3 | 126182 | 126193 | 12 | 50 % | 25 % | 0 % | 25 % | 0 % | 37229152 |
| 82 | NC_016692 | TCTT | 3 | 128409 | 128419 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 37229152 |
| 83 | NC_016692 | ATTT | 3 | 129956 | 129968 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | 37229152 |
| 84 | NC_016692 | TGAA | 4 | 130206 | 130221 | 16 | 50 % | 25 % | 25 % | 0 % | 6 % | 37229152 |
| 85 | NC_016692 | AACA | 3 | 131276 | 131287 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 37229152 |
| 86 | NC_016692 | ATTT | 3 | 132989 | 132999 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 37229152 |
| 87 | NC_016692 | ATTT | 3 | 133962 | 133974 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | 37229152 |
| 88 | NC_016692 | CTTA | 3 | 136720 | 136730 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 37229152 |
| 89 | NC_016692 | CCTT | 3 | 140793 | 140803 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 37229152 |
| 90 | NC_016692 | GGAT | 3 | 141337 | 141348 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 37229152 |
| 91 | NC_016692 | AATA | 4 | 145284 | 145299 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | 37229152 |
| 92 | NC_016692 | TTTC | 3 | 149912 | 149923 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 93 | NC_016692 | ATCA | 3 | 153589 | 153601 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 37229154 |
| 94 | NC_016692 | TGAT | 3 | 153684 | 153696 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 37229154 |
| 95 | NC_016692 | AAAG | 3 | 155431 | 155441 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 37229154 |
| 96 | NC_016692 | CGAT | 3 | 155858 | 155870 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 37229154 |
| 97 | NC_016692 | TATT | 3 | 156490 | 156501 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 37229154 |