All Imperfect Repeats of Rhizanthella gardneri plastid
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | NC_014874 | A | 12 | 321 | 332 | 12 | 100 % | 0 % | 0 % | 0 % | 8 % | 31713411 |
2 | NC_014874 | CATA | 3 | 929 | 940 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 31713411 |
3 | NC_014874 | CTTT | 4 | 1651 | 1666 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | 31713411 |
4 | NC_014874 | TTA | 4 | 2110 | 2120 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 31713411 |
5 | NC_014874 | GCT | 4 | 2670 | 2681 | 12 | 0 % | 33.33 % | 33.33 % | 33.33 % | 8 % | 31713411 |
6 | NC_014874 | TTC | 4 | 2952 | 2962 | 11 | 0 % | 66.67 % | 0 % | 33.33 % | 9 % | 31713411 |
7 | NC_014874 | A | 13 | 3079 | 3091 | 13 | 100 % | 0 % | 0 % | 0 % | 0 % | 31713411 |
8 | NC_014874 | T | 12 | 3462 | 3473 | 12 | 0 % | 100 % | 0 % | 0 % | 0 % | 31713411 |
9 | NC_014874 | ATT | 4 | 4070 | 4081 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 31713411 |
10 | NC_014874 | TAG | 4 | 4266 | 4276 | 11 | 33.33 % | 33.33 % | 33.33 % | 0 % | 9 % | 31713411 |
11 | NC_014874 | A | 14 | 5100 | 5113 | 14 | 100 % | 0 % | 0 % | 0 % | 0 % | 31713411 |
12 | NC_014874 | AT | 9 | 5180 | 5196 | 17 | 50 % | 50 % | 0 % | 0 % | 5 % | 31713411 |
13 | NC_014874 | ATATTG | 3 | 5193 | 5215 | 23 | 33.33 % | 50 % | 16.67 % | 0 % | 8 % | 31713411 |
14 | NC_014874 | TAAT | 3 | 5260 | 5271 | 12 | 50 % | 50 % | 0 % | 0 % | 0 % | 31713411 |
15 | NC_014874 | TA | 6 | 5333 | 5343 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 31713411 |
16 | NC_014874 | ATTAT | 3 | 5344 | 5357 | 14 | 40 % | 60 % | 0 % | 0 % | 7 % | 31713411 |
17 | NC_014874 | AT | 11 | 5462 | 5481 | 20 | 50 % | 50 % | 0 % | 0 % | 10 % | 31713411 |
18 | NC_014874 | ATAG | 3 | 5964 | 5975 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 31713411 |
19 | NC_014874 | AATA | 3 | 6200 | 6210 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 31713411 |
20 | NC_014874 | AAATA | 3 | 6809 | 6823 | 15 | 80 % | 20 % | 0 % | 0 % | 6 % | 31713411 |
21 | NC_014874 | GTAGA | 3 | 7276 | 7290 | 15 | 40 % | 20 % | 40 % | 0 % | 6 % | 31713411 |
22 | NC_014874 | AATA | 4 | 8028 | 8042 | 15 | 75 % | 25 % | 0 % | 0 % | 6 % | 31713411 |
23 | NC_014874 | AAAT | 3 | 8146 | 8157 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | 31713411 |
24 | NC_014874 | AT | 6 | 8326 | 8336 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 31713411 |
25 | NC_014874 | AT | 9 | 8352 | 8368 | 17 | 50 % | 50 % | 0 % | 0 % | 5 % | 31713411 |
26 | NC_014874 | AATT | 3 | 8531 | 8541 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 31713411 |
27 | NC_014874 | AAAT | 3 | 9571 | 9582 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 31713411 |
28 | NC_014874 | T | 12 | 9676 | 9687 | 12 | 0 % | 100 % | 0 % | 0 % | 8 % | 31713411 |
29 | NC_014874 | TA | 7 | 9745 | 9757 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 31713411 |
30 | NC_014874 | ATA | 5 | 9840 | 9853 | 14 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 31713411 |
31 | NC_014874 | ATA | 4 | 10524 | 10536 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 31713411 |
32 | NC_014874 | TAA | 5 | 10559 | 10573 | 15 | 66.67 % | 33.33 % | 0 % | 0 % | 6 % | 31713411 |
33 | NC_014874 | TC | 6 | 10975 | 10985 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 31713411 |
34 | NC_014874 | TA | 17 | 11316 | 11347 | 32 | 50 % | 50 % | 0 % | 0 % | 6 % | 31713411 |
35 | NC_014874 | TC | 6 | 11742 | 11752 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 31713411 |
36 | NC_014874 | CTT | 4 | 12771 | 12781 | 11 | 0 % | 66.67 % | 0 % | 33.33 % | 9 % | 31713411 |
37 | NC_014874 | TAA | 4 | 14199 | 14210 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 31713411 |
38 | NC_014874 | TAT | 4 | 14215 | 14226 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 31713411 |
39 | NC_014874 | ATCT | 3 | 14889 | 14900 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 31713411 |
40 | NC_014874 | AAAAT | 4 | 15768 | 15786 | 19 | 80 % | 20 % | 0 % | 0 % | 10 % | 31713411 |
41 | NC_014874 | TA | 6 | 15849 | 15860 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 31713411 |
42 | NC_014874 | GAAA | 3 | 15891 | 15901 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 31713411 |
43 | NC_014874 | TAT | 7 | 16147 | 16167 | 21 | 33.33 % | 66.67 % | 0 % | 0 % | 4 % | 31713411 |
44 | NC_014874 | AAT | 4 | 16471 | 16481 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 31713411 |
45 | NC_014874 | TTTA | 3 | 16577 | 16588 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 31713411 |
46 | NC_014874 | CTT | 4 | 16792 | 16803 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 31713411 |
47 | NC_014874 | TAAA | 3 | 16848 | 16858 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 31713411 |
48 | NC_014874 | CATA | 3 | 17066 | 17076 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 31713411 |
49 | NC_014874 | AGT | 4 | 17116 | 17127 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 31713411 |
50 | NC_014874 | AAT | 4 | 17751 | 17761 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 31713411 |
51 | NC_014874 | TAGATT | 3 | 18105 | 18121 | 17 | 33.33 % | 50 % | 16.67 % | 0 % | 5 % | 31713411 |
52 | NC_014874 | ATT | 4 | 18159 | 18170 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 31713411 |
53 | NC_014874 | AATA | 6 | 18656 | 18678 | 23 | 75 % | 25 % | 0 % | 0 % | 4 % | 31713411 |
54 | NC_014874 | AGAT | 3 | 19043 | 19053 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 31713411 |
55 | NC_014874 | T | 26 | 19142 | 19167 | 26 | 0 % | 100 % | 0 % | 0 % | 3 % | 31713411 |
56 | NC_014874 | TTC | 4 | 19636 | 19647 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 31713411 |
57 | NC_014874 | A | 12 | 19929 | 19940 | 12 | 100 % | 0 % | 0 % | 0 % | 8 % | 31713411 |
58 | NC_014874 | TTTA | 3 | 19999 | 20010 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 31713411 |
59 | NC_014874 | ATA | 5 | 20203 | 20216 | 14 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 31713411 |
60 | NC_014874 | ATA | 4 | 20219 | 20230 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 31713411 |
61 | NC_014874 | TTA | 4 | 20277 | 20289 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | 31713411 |
62 | NC_014874 | TATT | 3 | 20311 | 20321 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 31713411 |
63 | NC_014874 | A | 15 | 20710 | 20724 | 15 | 100 % | 0 % | 0 % | 0 % | 6 % | 31713411 |
64 | NC_014874 | TTTC | 3 | 20744 | 20755 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 31713411 |
65 | NC_014874 | A | 17 | 20813 | 20829 | 17 | 100 % | 0 % | 0 % | 0 % | 5 % | 31713411 |
66 | NC_014874 | ATAA | 3 | 21524 | 21535 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 31713411 |
67 | NC_014874 | ATA | 4 | 22388 | 22399 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 31713411 |
68 | NC_014874 | CAA | 4 | 23811 | 23822 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | 31713411 |
69 | NC_014874 | TA | 16 | 24665 | 24696 | 32 | 50 % | 50 % | 0 % | 0 % | 9 % | 31713411 |
70 | NC_014874 | GTT | 4 | 24853 | 24863 | 11 | 0 % | 66.67 % | 33.33 % | 0 % | 9 % | 31713411 |
71 | NC_014874 | CAT | 4 | 25139 | 25149 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 31713411 |
72 | NC_014874 | A | 14 | 25536 | 25549 | 14 | 100 % | 0 % | 0 % | 0 % | 7 % | 31713411 |
73 | NC_014874 | TCTT | 3 | 26623 | 26633 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 31713411 |
74 | NC_014874 | TCTT | 3 | 29767 | 29779 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 31713411 |
75 | NC_014874 | CTT | 4 | 32042 | 32053 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 31713411 |
76 | NC_014874 | TGA | 4 | 32524 | 32535 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 31713411 |
77 | NC_014874 | AATA | 3 | 33302 | 33314 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 31713411 |
78 | NC_014874 | TTTC | 3 | 33364 | 33375 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 31713411 |
79 | NC_014874 | TAT | 4 | 33912 | 33923 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 31713411 |
80 | NC_014874 | AAT | 4 | 35608 | 35618 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 31713411 |
81 | NC_014874 | TTTA | 3 | 36101 | 36112 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 31713411 |
82 | NC_014874 | CATT | 3 | 37301 | 37312 | 12 | 25 % | 50 % | 0 % | 25 % | 0 % | 31713411 |
83 | NC_014874 | ATTGA | 3 | 37346 | 37360 | 15 | 40 % | 40 % | 20 % | 0 % | 6 % | 31713411 |
84 | NC_014874 | AT | 6 | 37500 | 37510 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 31713411 |
85 | NC_014874 | ATA | 4 | 37710 | 37720 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 31713411 |
86 | NC_014874 | ATTTTT | 3 | 38254 | 38277 | 24 | 16.67 % | 83.33 % | 0 % | 0 % | 8 % | 31713411 |
87 | NC_014874 | GAT | 4 | 38289 | 38299 | 11 | 33.33 % | 33.33 % | 33.33 % | 0 % | 9 % | 31713411 |
88 | NC_014874 | TAA | 4 | 38479 | 38490 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 31713411 |
89 | NC_014874 | TCT | 4 | 39149 | 39160 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 31713411 |
90 | NC_014874 | A | 13 | 39621 | 39633 | 13 | 100 % | 0 % | 0 % | 0 % | 0 % | 31713411 |
91 | NC_014874 | CTTT | 3 | 39844 | 39855 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 31713411 |
92 | NC_014874 | TTC | 4 | 40548 | 40560 | 13 | 0 % | 66.67 % | 0 % | 33.33 % | 7 % | 31713411 |
93 | NC_014874 | ATAA | 4 | 40577 | 40591 | 15 | 75 % | 25 % | 0 % | 0 % | 6 % | 31713411 |
94 | NC_014874 | ATTT | 3 | 40764 | 40775 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 31713411 |
95 | NC_014874 | TA | 18 | 40793 | 40827 | 35 | 50 % | 50 % | 0 % | 0 % | 8 % | 31713411 |
96 | NC_014874 | AT | 6 | 40828 | 40838 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 31713411 |
97 | NC_014874 | ACTTT | 3 | 40839 | 40853 | 15 | 20 % | 60 % | 0 % | 20 % | 6 % | 31713411 |
98 | NC_014874 | AT | 6 | 40871 | 40882 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 31713411 |
99 | NC_014874 | A | 12 | 41300 | 41311 | 12 | 100 % | 0 % | 0 % | 0 % | 8 % | 31713411 |
100 | NC_014874 | TAAA | 3 | 41313 | 41325 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 31713411 |
101 | NC_014874 | ATA | 4 | 41720 | 41730 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 31713411 |
102 | NC_014874 | CTTA | 3 | 41857 | 41867 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 31713411 |
103 | NC_014874 | CAC | 4 | 44833 | 44844 | 12 | 33.33 % | 0 % | 0 % | 66.67 % | 8 % | 31713411 |
104 | NC_014874 | TA | 6 | 47710 | 47720 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 31713411 |
105 | NC_014874 | TA | 17 | 48567 | 48601 | 35 | 50 % | 50 % | 0 % | 0 % | 8 % | 31713411 |
106 | NC_014874 | A | 14 | 48886 | 48899 | 14 | 100 % | 0 % | 0 % | 0 % | 7 % | 31713411 |
107 | NC_014874 | AAACAA | 3 | 49109 | 49127 | 19 | 83.33 % | 0 % | 0 % | 16.67 % | 10 % | 31713411 |
108 | NC_014874 | TTCA | 3 | 49419 | 49430 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 31713411 |
109 | NC_014874 | ATCT | 3 | 49544 | 49554 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 31713411 |
110 | NC_014874 | TTA | 5 | 49932 | 49945 | 14 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | 31713411 |
111 | NC_014874 | AAT | 4 | 51627 | 51638 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 31713411 |
112 | NC_014874 | TGAA | 3 | 52175 | 52186 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 31713411 |
113 | NC_014874 | TCA | 4 | 53016 | 53027 | 12 | 33.33 % | 33.33 % | 0 % | 33.33 % | 8 % | 31713411 |
114 | NC_014874 | TGAT | 3 | 53158 | 53170 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 31713411 |
115 | NC_014874 | CAT | 4 | 53708 | 53718 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 31713411 |
116 | NC_014874 | GAAA | 3 | 55390 | 55401 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 31713411 |
117 | NC_014874 | CCAT | 3 | 57092 | 57102 | 11 | 25 % | 25 % | 0 % | 50 % | 9 % | 31713411 |