Tetra-nucleotide Imperfect Repeats of Theobroma cacao chloroplast
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| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_014676 | TTTA | 3 | 98 | 109 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 2 | NC_014676 | AAGT | 3 | 1250 | 1260 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 31319968 |
| 3 | NC_014676 | AATT | 3 | 4240 | 4252 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | Non-Coding |
| 4 | NC_014676 | TTCA | 3 | 5085 | 5096 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 5 | NC_014676 | AATC | 3 | 8706 | 8716 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 6 | NC_014676 | TTTA | 4 | 8938 | 8953 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 7 | NC_014676 | TTTA | 3 | 12435 | 12445 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 31319968 |
| 8 | NC_014676 | TAAA | 3 | 13676 | 13686 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 9 | NC_014676 | AGAA | 3 | 13850 | 13860 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 10 | NC_014676 | AAAT | 3 | 14149 | 14160 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 11 | NC_014676 | TTTC | 3 | 14349 | 14359 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 12 | NC_014676 | ATTT | 3 | 14852 | 14862 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 13 | NC_014676 | TTCA | 3 | 23381 | 23392 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 31319969 |
| 14 | NC_014676 | GAAT | 3 | 23491 | 23501 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 31319969 |
| 15 | NC_014676 | TATT | 4 | 23789 | 23804 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | 31319969 |
| 16 | NC_014676 | GATA | 3 | 27263 | 27273 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 31319969 |
| 17 | NC_014676 | GAAA | 3 | 31463 | 31474 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 18 | NC_014676 | GAAA | 3 | 31650 | 31661 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 19 | NC_014676 | TCTT | 3 | 31879 | 31889 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 20 | NC_014676 | TTCA | 3 | 32707 | 32718 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 21 | NC_014676 | AATA | 3 | 33794 | 33805 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 22 | NC_014676 | GAAA | 3 | 36169 | 36180 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 31319969 |
| 23 | NC_014676 | TTGC | 3 | 36570 | 36580 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 31319969 |
| 24 | NC_014676 | TGAA | 4 | 38202 | 38216 | 15 | 50 % | 25 % | 25 % | 0 % | 6 % | Non-Coding |
| 25 | NC_014676 | AATA | 3 | 38240 | 38251 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 26 | NC_014676 | AAAT | 3 | 38549 | 38561 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | Non-Coding |
| 27 | NC_014676 | GATC | 3 | 39159 | 39169 | 11 | 25 % | 25 % | 25 % | 25 % | 9 % | Non-Coding |
| 28 | NC_014676 | AATG | 3 | 42506 | 42517 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 31319970 |
| 29 | NC_014676 | GTAA | 3 | 46921 | 46931 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 31319970 |
| 30 | NC_014676 | TTTA | 3 | 49629 | 49640 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 31 | NC_014676 | AAAG | 3 | 50168 | 50178 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 32 | NC_014676 | AAAT | 3 | 50544 | 50555 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 33 | NC_014676 | CTTT | 3 | 51289 | 51299 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 34 | NC_014676 | ACAT | 3 | 51763 | 51773 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 35 | NC_014676 | TTTA | 4 | 51810 | 51825 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 36 | NC_014676 | TATT | 4 | 52296 | 52311 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 37 | NC_014676 | CAAA | 3 | 52882 | 52893 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 31319970 |
| 38 | NC_014676 | GTCT | 3 | 53504 | 53515 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 31319970 |
| 39 | NC_014676 | GATT | 3 | 54307 | 54318 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | Non-Coding |
| 40 | NC_014676 | AAAT | 3 | 54526 | 54536 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 41 | NC_014676 | TTTA | 3 | 55343 | 55354 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 42 | NC_014676 | TTTG | 3 | 56137 | 56148 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | Non-Coding |
| 43 | NC_014676 | TGTT | 3 | 60897 | 60908 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | Non-Coding |
| 44 | NC_014676 | TAGT | 3 | 63089 | 63100 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | Non-Coding |
| 45 | NC_014676 | TCTA | 3 | 64140 | 64151 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 46 | NC_014676 | CTTT | 3 | 66567 | 66578 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 47 | NC_014676 | AATC | 3 | 68620 | 68631 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 48 | NC_014676 | TTTC | 3 | 69097 | 69108 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 49 | NC_014676 | TATT | 4 | 72227 | 72242 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 50 | NC_014676 | TACA | 3 | 72470 | 72481 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 31319972 |
| 51 | NC_014676 | TAAA | 3 | 72495 | 72506 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 31319972 |
| 52 | NC_014676 | TCAT | 3 | 74132 | 74143 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 53 | NC_014676 | TTTA | 3 | 75370 | 75381 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 31319968 |
| 54 | NC_014676 | TTTC | 3 | 80139 | 80149 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 31319968 |
| 55 | NC_014676 | TTAC | 3 | 81826 | 81837 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 31319968 |
| 56 | NC_014676 | AAAT | 3 | 82977 | 82989 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 31319968 |
| 57 | NC_014676 | CAAT | 3 | 87944 | 87954 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 31319968 |
| 58 | NC_014676 | AATT | 3 | 88276 | 88286 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 31319968 |
| 59 | NC_014676 | TTAT | 3 | 88413 | 88424 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 31319968 |
| 60 | NC_014676 | ATTT | 3 | 89338 | 89349 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 31319968 |
| 61 | NC_014676 | TTAA | 3 | 89365 | 89375 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 31319968 |
| 62 | NC_014676 | TTCT | 3 | 93046 | 93056 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 31319968 |
| 63 | NC_014676 | ATCG | 3 | 93804 | 93816 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 31319968 |
| 64 | NC_014676 | CTTT | 3 | 94233 | 94243 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 31319968 |
| 65 | NC_014676 | TGAT | 3 | 96115 | 96127 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 31319968 |
| 66 | NC_014676 | AATA | 3 | 96998 | 97010 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 31319968 |
| 67 | NC_014676 | TCTA | 3 | 108682 | 108693 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 31319972 |
| 68 | NC_014676 | AAGG | 3 | 108830 | 108840 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 31319972 |
| 69 | NC_014676 | GAGG | 3 | 111605 | 111616 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 31319972 |
| 70 | NC_014676 | AGGT | 3 | 111817 | 111828 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 31319972 |
| 71 | NC_014676 | TAAG | 3 | 112937 | 112947 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 31319972 |
| 72 | NC_014676 | AAAT | 3 | 116431 | 116441 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 31319972 |
| 73 | NC_014676 | TGTT | 3 | 117976 | 117987 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | 31319972 |
| 74 | NC_014676 | TTTA | 3 | 119085 | 119096 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 31319972 |
| 75 | NC_014676 | AAAT | 3 | 119298 | 119309 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 31319972 |
| 76 | NC_014676 | ATAA | 3 | 119316 | 119327 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 31319972 |
| 77 | NC_014676 | ATAA | 3 | 119332 | 119343 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | 31319972 |
| 78 | NC_014676 | CTAT | 4 | 120971 | 120985 | 15 | 25 % | 50 % | 0 % | 25 % | 6 % | 31319972 |
| 79 | NC_014676 | TAGA | 3 | 121071 | 121082 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 31319972 |
| 80 | NC_014676 | TTGA | 3 | 123130 | 123141 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | 31319972 |
| 81 | NC_014676 | GAAT | 3 | 123535 | 123546 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 31319972 |
| 82 | NC_014676 | TTTG | 3 | 124377 | 124387 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | 31319972 |
| 83 | NC_014676 | TTCT | 3 | 125210 | 125221 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 31319972 |
| 84 | NC_014676 | CCAA | 3 | 125485 | 125496 | 12 | 50 % | 0 % | 0 % | 50 % | 8 % | 31319972 |
| 85 | NC_014676 | TAAT | 3 | 131094 | 131105 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 31319972 |
| 86 | NC_014676 | CATT | 3 | 131256 | 131267 | 12 | 25 % | 50 % | 0 % | 25 % | 0 % | 31319972 |
| 87 | NC_014676 | AACT | 3 | 131416 | 131426 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 31319972 |
| 88 | NC_014676 | AAAG | 3 | 132843 | 132854 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 31319972 |
| 89 | NC_014676 | ATTG | 3 | 133239 | 133250 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 31319972 |
| 90 | NC_014676 | CTTA | 3 | 137006 | 137016 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 31319972 |
| 91 | NC_014676 | CCTT | 3 | 141113 | 141123 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 31319972 |
| 92 | NC_014676 | GGAT | 3 | 141656 | 141667 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 31319972 |
| 93 | NC_014676 | AAAT | 5 | 145568 | 145586 | 19 | 75 % | 25 % | 0 % | 0 % | 10 % | 31319972 |
| 94 | NC_014676 | TTTC | 3 | 150198 | 150209 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 95 | NC_014676 | ATCA | 3 | 153868 | 153880 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 34224021 |
| 96 | NC_014676 | TGAT | 3 | 153963 | 153975 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 34224021 |
| 97 | NC_014676 | AAAG | 3 | 155710 | 155720 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 34224021 |
| 98 | NC_014676 | CGAT | 3 | 156137 | 156149 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 34224021 |
| 99 | NC_014676 | TATT | 3 | 156769 | 156780 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 34224021 |