Tetra-nucleotide Imperfect Repeats of Trifolium subterraneum chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_011828 | AAGT | 3 | 1155 | 1165 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 219673953 |
| 2 | NC_011828 | AATA | 3 | 2333 | 2344 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 3 | NC_011828 | ATTT | 3 | 7265 | 7276 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 219673995 |
| 4 | NC_011828 | TTCA | 3 | 10908 | 10919 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 219673995 |
| 5 | NC_011828 | TTGA | 3 | 14447 | 14458 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 219673995 |
| 6 | NC_011828 | GATA | 3 | 14760 | 14771 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 219673995 |
| 7 | NC_011828 | TATC | 3 | 15357 | 15368 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 219673995 |
| 8 | NC_011828 | ATCT | 3 | 16259 | 16271 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | 219673995 |
| 9 | NC_011828 | TCGG | 3 | 20362 | 20372 | 11 | 0 % | 25 % | 50 % | 25 % | 9 % | 219673995 |
| 10 | NC_011828 | ATTT | 3 | 20896 | 20906 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 219673995 |
| 11 | NC_011828 | GTTT | 3 | 25826 | 25837 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | 219673995 |
| 12 | NC_011828 | CTGT | 3 | 26711 | 26722 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 219673995 |
| 13 | NC_011828 | CAAT | 3 | 26726 | 26736 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 219673995 |
| 14 | NC_011828 | ACCC | 3 | 29766 | 29777 | 12 | 25 % | 0 % | 0 % | 75 % | 8 % | 219673995 |
| 15 | NC_011828 | TTTC | 3 | 31260 | 31271 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 219673995 |
| 16 | NC_011828 | GAAT | 3 | 32261 | 32272 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 219673995 |
| 17 | NC_011828 | TTCT | 3 | 32908 | 32918 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 219673995 |
| 18 | NC_011828 | GTTC | 4 | 34588 | 34603 | 16 | 0 % | 50 % | 25 % | 25 % | 6 % | 219673995 |
| 19 | NC_011828 | TTCT | 3 | 39001 | 39011 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 219673995 |
| 20 | NC_011828 | ATTT | 4 | 41954 | 41969 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | 219673995 |
| 21 | NC_011828 | ATTT | 3 | 42733 | 42744 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 219673995 |
| 22 | NC_011828 | TTTA | 3 | 43084 | 43094 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 219673995 |
| 23 | NC_011828 | GAAA | 3 | 43201 | 43212 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 219673995 |
| 24 | NC_011828 | GATA | 3 | 43240 | 43251 | 12 | 50 % | 25 % | 25 % | 0 % | 0 % | 219673995 |
| 25 | NC_011828 | TGGG | 3 | 48243 | 48253 | 11 | 0 % | 25 % | 75 % | 0 % | 9 % | 219673995 |
| 26 | NC_011828 | GAAA | 3 | 48407 | 48418 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 219673995 |
| 27 | NC_011828 | GCTT | 3 | 48810 | 48820 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 219673995 |
| 28 | NC_011828 | ACTA | 3 | 50533 | 50547 | 15 | 50 % | 25 % | 0 % | 25 % | 6 % | 219673995 |
| 29 | NC_011828 | AAGA | 3 | 54023 | 54034 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 219673995 |
| 30 | NC_011828 | CATA | 3 | 54925 | 54937 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 219673995 |
| 31 | NC_011828 | ATGG | 3 | 60220 | 60232 | 13 | 25 % | 25 % | 50 % | 0 % | 7 % | 219673995 |
| 32 | NC_011828 | AAAG | 3 | 60824 | 60834 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 219673995 |
| 33 | NC_011828 | GAAA | 3 | 60846 | 60857 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 219673995 |
| 34 | NC_011828 | ATTG | 3 | 61566 | 61577 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 219673995 |
| 35 | NC_011828 | TCAT | 3 | 66142 | 66152 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 219673995 |
| 36 | NC_011828 | TTTA | 3 | 68270 | 68280 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 219673995 |
| 37 | NC_011828 | TTTA | 3 | 70358 | 70368 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 219673995 |
| 38 | NC_011828 | TTGA | 3 | 71861 | 71872 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 219673995 |
| 39 | NC_011828 | TCTT | 3 | 72733 | 72744 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 219673995 |
| 40 | NC_011828 | GAAT | 3 | 77324 | 77334 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 219673995 |
| 41 | NC_011828 | CCTA | 3 | 78912 | 78922 | 11 | 25 % | 25 % | 0 % | 50 % | 9 % | 219673995 |
| 42 | NC_011828 | GATA | 3 | 80855 | 80865 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 219673995 |
| 43 | NC_011828 | CATT | 3 | 81231 | 81242 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 219673995 |
| 44 | NC_011828 | ATTT | 3 | 81896 | 81906 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 219673995 |
| 45 | NC_011828 | TTGA | 3 | 83938 | 83949 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 219673995 |
| 46 | NC_011828 | TTTA | 3 | 84126 | 84137 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 219673995 |
| 47 | NC_011828 | TTTA | 3 | 84353 | 84364 | 12 | 25 % | 75 % | 0 % | 0 % | 0 % | 219673995 |
| 48 | NC_011828 | TAGA | 3 | 84407 | 84418 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 219673995 |
| 49 | NC_011828 | AATT | 3 | 84560 | 84571 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 219673995 |
| 50 | NC_011828 | TTCT | 4 | 85453 | 85467 | 15 | 0 % | 75 % | 0 % | 25 % | 6 % | 219673995 |
| 51 | NC_011828 | CATT | 3 | 85924 | 85935 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 219673995 |
| 52 | NC_011828 | CTTT | 3 | 86001 | 86012 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 219673995 |
| 53 | NC_011828 | AAGA | 3 | 86016 | 86027 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 219673995 |
| 54 | NC_011828 | ATTT | 3 | 86717 | 86728 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 219673995 |
| 55 | NC_011828 | AATT | 3 | 89824 | 89834 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 219673995 |
| 56 | NC_011828 | CTTA | 3 | 92165 | 92175 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 219673995 |
| 57 | NC_011828 | CTAC | 3 | 93276 | 93287 | 12 | 25 % | 25 % | 0 % | 50 % | 0 % | 219673995 |
| 58 | NC_011828 | TTTA | 3 | 100118 | 100129 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 219673995 |
| 59 | NC_011828 | AAAT | 3 | 107197 | 107207 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 219673999 |
| 60 | NC_011828 | TTAT | 3 | 108316 | 108327 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 219673999 |
| 61 | NC_011828 | ACTA | 3 | 110361 | 110371 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 219674001 |
| 62 | NC_011828 | TCAT | 3 | 111312 | 111323 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 63 | NC_011828 | TATT | 3 | 113059 | 113070 | 12 | 25 % | 75 % | 0 % | 0 % | 0 % | 219674004 |
| 64 | NC_011828 | GTTT | 3 | 113388 | 113398 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | Non-Coding |
| 65 | NC_011828 | TATT | 3 | 114773 | 114788 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 66 | NC_011828 | CTTT | 3 | 120039 | 120050 | 12 | 0 % | 75 % | 0 % | 25 % | 0 % | Non-Coding |
| 67 | NC_011828 | AAAG | 3 | 121229 | 121240 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 68 | NC_011828 | AATG | 3 | 121243 | 121254 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 69 | NC_011828 | TGAA | 3 | 121922 | 121933 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 219674012 |
| 70 | NC_011828 | TTTC | 4 | 123185 | 123200 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | Non-Coding |
| 71 | NC_011828 | ATTT | 3 | 125606 | 125616 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 72 | NC_011828 | TCTT | 3 | 129974 | 129984 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 73 | NC_011828 | AAAG | 3 | 129990 | 130000 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 74 | NC_011828 | TCTA | 3 | 130819 | 130831 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | Non-Coding |
| 75 | NC_011828 | ACCA | 3 | 132926 | 132937 | 12 | 50 % | 0 % | 0 % | 50 % | 8 % | Non-Coding |
| 76 | NC_011828 | ATTT | 3 | 133303 | 133313 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 77 | NC_011828 | TGCA | 3 | 134469 | 134481 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 219674019 |
| 78 | NC_011828 | CATC | 3 | 135648 | 135660 | 13 | 25 % | 25 % | 0 % | 50 % | 7 % | Non-Coding |
| 79 | NC_011828 | ATTT | 4 | 135887 | 135901 | 15 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 80 | NC_011828 | AATG | 3 | 137851 | 137861 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 219674020 |
| 81 | NC_011828 | TAAA | 3 | 139073 | 139083 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 82 | NC_011828 | TTAT | 3 | 140029 | 140040 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 83 | NC_011828 | CATT | 3 | 143494 | 143504 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 219674021 |
| 84 | NC_011828 | TTCA | 3 | 143821 | 143833 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | 219674021 |