Tetra-nucleotide Imperfect Repeats of Brachypodium distachyon chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_011032 | AAGT | 3 | 794 | 804 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 194033130 |
| 2 | NC_011032 | ATAG | 3 | 1220 | 1230 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 3 | NC_011032 | AAAG | 3 | 2572 | 2583 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 270040539 |
| 4 | NC_011032 | AGAA | 3 | 3201 | 3212 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 5 | NC_011032 | TTTA | 3 | 4385 | 4396 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 6 | NC_011032 | TTCT | 3 | 5024 | 5035 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 194033132 |
| 7 | NC_011032 | ATAA | 3 | 5273 | 5283 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 194033132 |
| 8 | NC_011032 | TGAG | 3 | 6038 | 6049 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | Non-Coding |
| 9 | NC_011032 | TTCT | 3 | 6825 | 6835 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 194033133 |
| 10 | NC_011032 | TTCT | 3 | 7724 | 7734 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 11 | NC_011032 | GAAA | 3 | 7880 | 7890 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 12 | NC_011032 | GAAA | 3 | 10052 | 10063 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 194033136 |
| 13 | NC_011032 | TTAA | 4 | 11493 | 11507 | 15 | 50 % | 50 % | 0 % | 0 % | 6 % | Non-Coding |
| 14 | NC_011032 | ATAC | 4 | 15981 | 15996 | 16 | 50 % | 25 % | 0 % | 25 % | 6 % | Non-Coding |
| 15 | NC_011032 | AAAT | 3 | 16071 | 16081 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 16 | NC_011032 | TTTC | 3 | 16677 | 16687 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 17 | NC_011032 | ATGT | 3 | 16950 | 16962 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 18 | NC_011032 | ATCA | 3 | 17395 | 17405 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 19 | NC_011032 | GAAA | 3 | 18950 | 18960 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 20 | NC_011032 | TTTC | 3 | 20152 | 20164 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 194033140 |
| 21 | NC_011032 | TCAC | 3 | 24993 | 25004 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | Non-Coding |
| 22 | NC_011032 | TTCA | 3 | 27375 | 27385 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 23 | NC_011032 | TTAA | 3 | 29640 | 29651 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 24 | NC_011032 | GAAA | 3 | 29784 | 29795 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 25 | NC_011032 | CTTT | 3 | 32191 | 32202 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 26 | NC_011032 | ATTT | 3 | 32284 | 32294 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 27 | NC_011032 | AAAG | 3 | 33434 | 33444 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 194033145 |
| 28 | NC_011032 | AAGA | 3 | 39029 | 39040 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 194033149 |
| 29 | NC_011032 | CTAG | 3 | 39972 | 39984 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 194033149 |
| 30 | NC_011032 | ATTT | 3 | 41423 | 41433 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 31 | NC_011032 | AAAG | 3 | 42175 | 42185 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 194033150 |
| 32 | NC_011032 | CTTT | 3 | 42402 | 42413 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 194033150 |
| 33 | NC_011032 | TTCA | 3 | 43699 | 43710 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 34 | NC_011032 | AAAG | 3 | 44494 | 44504 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 35 | NC_011032 | TTGA | 3 | 46468 | 46480 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 36 | NC_011032 | AAAT | 3 | 46836 | 46847 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 37 | NC_011032 | CAGA | 3 | 48237 | 48247 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 194033152 |
| 38 | NC_011032 | AATT | 3 | 49777 | 49788 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 39 | NC_011032 | GACT | 3 | 51060 | 51072 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | Non-Coding |
| 40 | NC_011032 | TAGG | 4 | 51482 | 51497 | 16 | 25 % | 25 % | 50 % | 0 % | 6 % | Non-Coding |
| 41 | NC_011032 | AATT | 3 | 53619 | 53630 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 42 | NC_011032 | TGCA | 3 | 55177 | 55189 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 194033157 |
| 43 | NC_011032 | TCTT | 3 | 58326 | 58337 | 12 | 0 % | 75 % | 0 % | 25 % | 0 % | Non-Coding |
| 44 | NC_011032 | ATTC | 3 | 58397 | 58407 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 45 | NC_011032 | GAAA | 3 | 61660 | 61671 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | Non-Coding |
| 46 | NC_011032 | TAAA | 3 | 62333 | 62344 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 47 | NC_011032 | TATT | 3 | 63912 | 63922 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 48 | NC_011032 | GAAA | 3 | 64247 | 64258 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 194033168 |
| 49 | NC_011032 | AATA | 3 | 64322 | 64333 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 50 | NC_011032 | TAAA | 3 | 64503 | 64514 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 51 | NC_011032 | TAAA | 3 | 64526 | 64537 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 52 | NC_011032 | ATGT | 3 | 66405 | 66415 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 194033129 |
| 53 | NC_011032 | AGAA | 3 | 67266 | 67277 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 194033129 |
| 54 | NC_011032 | AAAG | 3 | 67405 | 67415 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 194033129 |
| 55 | NC_011032 | CTTT | 3 | 69316 | 69327 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 194033129 |
| 56 | NC_011032 | ACTT | 3 | 69566 | 69576 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 194033129 |
| 57 | NC_011032 | GAAA | 3 | 70736 | 70747 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 194033129 |
| 58 | NC_011032 | AAAG | 3 | 71789 | 71800 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 194033129 |
| 59 | NC_011032 | AGAA | 3 | 75165 | 75175 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 194033129 |
| 60 | NC_011032 | ATTT | 3 | 76523 | 76533 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 194033129 |
| 61 | NC_011032 | TTAT | 3 | 78799 | 78810 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 194033129 |
| 62 | NC_011032 | AATG | 3 | 79867 | 79877 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 194033129 |
| 63 | NC_011032 | TTCT | 3 | 88205 | 88215 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 194033129 |
| 64 | NC_011032 | AAAC | 3 | 92996 | 93008 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 194033209 |
| 65 | NC_011032 | ACGG | 3 | 96242 | 96253 | 12 | 25 % | 0 % | 50 % | 25 % | 8 % | 194033209 |
| 66 | NC_011032 | AGGT | 3 | 96526 | 96537 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 194033209 |
| 67 | NC_011032 | AACG | 3 | 97851 | 97862 | 12 | 50 % | 0 % | 25 % | 25 % | 0 % | 194033209 |
| 68 | NC_011032 | AAAG | 4 | 99157 | 99172 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | 194033209 |
| 69 | NC_011032 | AAGG | 3 | 100766 | 100777 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 194033209 |
| 70 | NC_011032 | AGAA | 3 | 101097 | 101107 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 194033209 |
| 71 | NC_011032 | AAAC | 4 | 104290 | 104305 | 16 | 75 % | 0 % | 0 % | 25 % | 6 % | 194033209 |
| 72 | NC_011032 | AATA | 3 | 109514 | 109524 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 194033209 |
| 73 | NC_011032 | AAAG | 5 | 111561 | 111579 | 19 | 75 % | 0 % | 25 % | 0 % | 10 % | 194033209 |
| 74 | NC_011032 | CTTT | 4 | 115473 | 115488 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | 194033209 |
| 75 | NC_011032 | TCGT | 3 | 116783 | 116794 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | 194033209 |
| 76 | NC_011032 | CTTA | 3 | 116990 | 117000 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 194033209 |
| 77 | NC_011032 | CCGT | 3 | 118392 | 118403 | 12 | 0 % | 25 % | 25 % | 50 % | 8 % | 194033209 |
| 78 | NC_011032 | AGAA | 3 | 126431 | 126441 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 194033204 |
| 79 | NC_011032 | TGAA | 3 | 131963 | 131974 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 80 | NC_011032 | CATT | 3 | 134768 | 134778 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |