Tetra-nucleotide Imperfect Repeats of Cryptomeria japonica chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_010548 | ATTC | 3 | 4433 | 4444 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 172072873 |
| 2 | NC_010548 | GAAA | 3 | 8494 | 8504 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 172072878 |
| 3 | NC_010548 | AAAG | 3 | 11625 | 11635 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 4 | NC_010548 | AATG | 3 | 15407 | 15418 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 5 | NC_010548 | AATT | 3 | 16901 | 16911 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 172072889 |
| 6 | NC_010548 | ATCT | 3 | 18261 | 18271 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 172072891 |
| 7 | NC_010548 | ACAA | 3 | 18834 | 18846 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 172072891 |
| 8 | NC_010548 | ATTT | 3 | 23971 | 23983 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | 172072891 |
| 9 | NC_010548 | CAAA | 3 | 24300 | 24310 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | 172072891 |
| 10 | NC_010548 | ATTT | 3 | 27402 | 27412 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 172072891 |
| 11 | NC_010548 | AAGA | 3 | 28078 | 28088 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 172072891 |
| 12 | NC_010548 | TATG | 3 | 30358 | 30369 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | 172072891 |
| 13 | NC_010548 | AAAT | 4 | 36092 | 36106 | 15 | 75 % | 25 % | 0 % | 0 % | 6 % | 172072891 |
| 14 | NC_010548 | TCTA | 3 | 36729 | 36740 | 12 | 25 % | 50 % | 0 % | 25 % | 0 % | 172072891 |
| 15 | NC_010548 | TTGA | 3 | 37891 | 37902 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 172072891 |
| 16 | NC_010548 | TCAA | 3 | 39861 | 39872 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 172072891 |
| 17 | NC_010548 | ACAT | 4 | 39985 | 40001 | 17 | 50 % | 25 % | 0 % | 25 % | 5 % | 172072891 |
| 18 | NC_010548 | ATTT | 3 | 40392 | 40403 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 172072891 |
| 19 | NC_010548 | GGAT | 3 | 42257 | 42269 | 13 | 25 % | 25 % | 50 % | 0 % | 7 % | 172072891 |
| 20 | NC_010548 | TATT | 3 | 42463 | 42474 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 172072891 |
| 21 | NC_010548 | TTGA | 3 | 42718 | 42729 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | 172072891 |
| 22 | NC_010548 | AAAG | 3 | 44534 | 44545 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 172072891 |
| 23 | NC_010548 | TTAA | 3 | 45754 | 45764 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 172072891 |
| 24 | NC_010548 | TTTC | 3 | 49309 | 49320 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 172072891 |
| 25 | NC_010548 | AAAG | 3 | 57338 | 57349 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 172072891 |
| 26 | NC_010548 | AAAT | 3 | 62163 | 62174 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 172072891 |
| 27 | NC_010548 | TAAA | 3 | 63714 | 63725 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | 172072891 |
| 28 | NC_010548 | AAAG | 3 | 63845 | 63855 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 172072891 |
| 29 | NC_010548 | TTAT | 3 | 67991 | 68002 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 172072891 |
| 30 | NC_010548 | ATCA | 3 | 74057 | 74067 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 172072891 |
| 31 | NC_010548 | TCAG | 3 | 75401 | 75411 | 11 | 25 % | 25 % | 25 % | 25 % | 9 % | 172072891 |
| 32 | NC_010548 | AGAA | 3 | 76021 | 76031 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 172072891 |
| 33 | NC_010548 | CAAT | 3 | 78837 | 78849 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 172072891 |
| 34 | NC_010548 | TAGA | 3 | 79286 | 79297 | 12 | 50 % | 25 % | 25 % | 0 % | 0 % | 172072891 |
| 35 | NC_010548 | AAAT | 3 | 79534 | 79546 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 172072891 |
| 36 | NC_010548 | TTGA | 3 | 80131 | 80142 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 172072891 |
| 37 | NC_010548 | ATTG | 3 | 81252 | 81262 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 172072891 |
| 38 | NC_010548 | TAAA | 3 | 82151 | 82161 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 172072891 |
| 39 | NC_010548 | GAAA | 3 | 85708 | 85718 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 172072891 |
| 40 | NC_010548 | TATT | 4 | 86525 | 86539 | 15 | 25 % | 75 % | 0 % | 0 % | 6 % | 172072891 |
| 41 | NC_010548 | ATTA | 3 | 88410 | 88421 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 172072891 |
| 42 | NC_010548 | ATCT | 3 | 88708 | 88719 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 172072891 |
| 43 | NC_010548 | GAAA | 3 | 89731 | 89741 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 172072891 |
| 44 | NC_010548 | AAGA | 3 | 91904 | 91915 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 172072891 |
| 45 | NC_010548 | GGAA | 3 | 92473 | 92484 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 172072891 |
| 46 | NC_010548 | TTAG | 3 | 92513 | 92523 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 172072891 |
| 47 | NC_010548 | AAGA | 3 | 94728 | 94738 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 172072891 |
| 48 | NC_010548 | TTTG | 3 | 95436 | 95447 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | 172072891 |
| 49 | NC_010548 | TTTC | 3 | 96322 | 96333 | 12 | 0 % | 75 % | 0 % | 25 % | 0 % | 172072891 |
| 50 | NC_010548 | GATA | 3 | 99513 | 99524 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 172072891 |
| 51 | NC_010548 | CTAC | 3 | 101876 | 101887 | 12 | 25 % | 25 % | 0 % | 50 % | 0 % | 172072891 |
| 52 | NC_010548 | TTGC | 3 | 105599 | 105610 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 172072891 |
| 53 | NC_010548 | CTAA | 3 | 107786 | 107796 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 172072891 |
| 54 | NC_010548 | CTAT | 3 | 108562 | 108573 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 172072891 |
| 55 | NC_010548 | ATTG | 3 | 111619 | 111630 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 260780630 |
| 56 | NC_010548 | TTCA | 3 | 111742 | 111752 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 260780630 |
| 57 | NC_010548 | TTTA | 3 | 111849 | 111859 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 260780630 |
| 58 | NC_010548 | GAAA | 4 | 112720 | 112735 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | 260780630 |
| 59 | NC_010548 | TCGA | 3 | 116568 | 116578 | 11 | 25 % | 25 % | 25 % | 25 % | 9 % | 172072948 |
| 60 | NC_010548 | AAAT | 3 | 117653 | 117664 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 172072948 |
| 61 | NC_010548 | ATGA | 3 | 118827 | 118839 | 13 | 50 % | 25 % | 25 % | 0 % | 7 % | 172072948 |
| 62 | NC_010548 | ATTT | 3 | 120555 | 120565 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 172072948 |
| 63 | NC_010548 | TTTA | 4 | 122303 | 122318 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 64 | NC_010548 | AAAG | 3 | 123194 | 123204 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 172072949 |
| 65 | NC_010548 | AATA | 3 | 124164 | 124175 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 172072949 |
| 66 | NC_010548 | AAAG | 3 | 127287 | 127298 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 172072949 |
| 67 | NC_010548 | CAAA | 3 | 131283 | 131293 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 68 | NC_010548 | ATTT | 3 | 131523 | 131534 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 69 | NC_010548 | CAAT | 3 | 131679 | 131690 | 12 | 50 % | 25 % | 0 % | 25 % | 0 % | Non-Coding |