All Imperfect Repeats of Cuscuta reflexa chloroplast
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | NC_009766 | AT | 6 | 3214 | 3224 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | Non-Coding |
2 | NC_009766 | TAAAA | 4 | 3232 | 3252 | 21 | 80 % | 20 % | 0 % | 0 % | 9 % | Non-Coding |
3 | NC_009766 | ATTT | 3 | 3753 | 3765 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | Non-Coding |
4 | NC_009766 | ATT | 4 | 5292 | 5303 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | Non-Coding |
5 | NC_009766 | GTT | 4 | 5845 | 5855 | 11 | 0 % | 66.67 % | 33.33 % | 0 % | 9 % | Non-Coding |
6 | NC_009766 | ATTT | 3 | 6666 | 6677 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
7 | NC_009766 | TAA | 4 | 8428 | 8442 | 15 | 66.67 % | 33.33 % | 0 % | 0 % | 6 % | Non-Coding |
8 | NC_009766 | ATGA | 3 | 9010 | 9022 | 13 | 50 % | 25 % | 25 % | 0 % | 7 % | 156618812 |
9 | NC_009766 | GTT | 4 | 9117 | 9128 | 12 | 0 % | 66.67 % | 33.33 % | 0 % | 8 % | 156618812 |
10 | NC_009766 | T | 12 | 9134 | 9145 | 12 | 0 % | 100 % | 0 % | 0 % | 0 % | 156618812 |
11 | NC_009766 | TAA | 4 | 10612 | 10624 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | Non-Coding |
12 | NC_009766 | TTTA | 3 | 10630 | 10640 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
13 | NC_009766 | TTA | 5 | 10724 | 10738 | 15 | 33.33 % | 66.67 % | 0 % | 0 % | 6 % | Non-Coding |
14 | NC_009766 | TTTAA | 3 | 10769 | 10783 | 15 | 40 % | 60 % | 0 % | 0 % | 0 % | Non-Coding |
15 | NC_009766 | ATA | 4 | 12006 | 12016 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | Non-Coding |
16 | NC_009766 | GAAA | 3 | 12778 | 12789 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
17 | NC_009766 | TTAA | 3 | 12805 | 12817 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | Non-Coding |
18 | NC_009766 | ATT | 4 | 12881 | 12893 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | Non-Coding |
19 | NC_009766 | AAAT | 3 | 18916 | 18926 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 156618817 |
20 | NC_009766 | AAAG | 3 | 18951 | 18961 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 156618817 |
21 | NC_009766 | TAAA | 4 | 19040 | 19055 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | 156618817 |
22 | NC_009766 | GAAT | 3 | 19109 | 19119 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 156618817 |
23 | NC_009766 | A | 17 | 19362 | 19378 | 17 | 100 % | 0 % | 0 % | 0 % | 5 % | 156618817 |
24 | NC_009766 | TTC | 4 | 19793 | 19804 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 156618817 |
25 | NC_009766 | T | 12 | 22640 | 22651 | 12 | 0 % | 100 % | 0 % | 0 % | 8 % | 156618818 |
26 | NC_009766 | T | 14 | 23285 | 23298 | 14 | 0 % | 100 % | 0 % | 0 % | 7 % | 156618818 |
27 | NC_009766 | ATA | 4 | 23766 | 23778 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | Non-Coding |
28 | NC_009766 | AAAAT | 3 | 23979 | 23992 | 14 | 80 % | 20 % | 0 % | 0 % | 7 % | Non-Coding |
29 | NC_009766 | A | 12 | 25391 | 25402 | 12 | 100 % | 0 % | 0 % | 0 % | 8 % | Non-Coding |
30 | NC_009766 | ATTT | 3 | 26399 | 26409 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
31 | NC_009766 | AAATA | 3 | 26631 | 26646 | 16 | 80 % | 20 % | 0 % | 0 % | 6 % | Non-Coding |
32 | NC_009766 | T | 12 | 27306 | 27317 | 12 | 0 % | 100 % | 0 % | 0 % | 0 % | Non-Coding |
33 | NC_009766 | TAA | 4 | 27350 | 27361 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | Non-Coding |
34 | NC_009766 | GAAA | 3 | 29030 | 29041 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 156618822 |
35 | NC_009766 | TTG | 4 | 29435 | 29445 | 11 | 0 % | 66.67 % | 33.33 % | 0 % | 9 % | 156618822 |
36 | NC_009766 | TAT | 4 | 30032 | 30043 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | Non-Coding |
37 | NC_009766 | AG | 6 | 30218 | 30229 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | Non-Coding |
38 | NC_009766 | TATC | 3 | 30407 | 30418 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
39 | NC_009766 | T | 12 | 30491 | 30502 | 12 | 0 % | 100 % | 0 % | 0 % | 8 % | Non-Coding |
40 | NC_009766 | TC | 6 | 30734 | 30744 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 156618823 |
41 | NC_009766 | AAAAAT | 3 | 30910 | 30927 | 18 | 83.33 % | 16.67 % | 0 % | 0 % | 5 % | Non-Coding |
42 | NC_009766 | TGAT | 3 | 34483 | 34495 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 156618826 |
43 | NC_009766 | AATG | 3 | 34755 | 34766 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 156618826 |
44 | NC_009766 | GCA | 4 | 35154 | 35165 | 12 | 33.33 % | 0 % | 33.33 % | 33.33 % | 8 % | 156618826 |
45 | NC_009766 | TG | 6 | 35191 | 35201 | 11 | 0 % | 50 % | 50 % | 0 % | 9 % | 156618826 |
46 | NC_009766 | TTA | 4 | 36813 | 36825 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | Non-Coding |
47 | NC_009766 | TAAA | 3 | 38888 | 38899 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 156618827 |
48 | NC_009766 | AT | 8 | 40837 | 40852 | 16 | 50 % | 50 % | 0 % | 0 % | 6 % | Non-Coding |
49 | NC_009766 | CAAT | 3 | 42663 | 42673 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
50 | NC_009766 | GGGT | 3 | 42838 | 42848 | 11 | 0 % | 25 % | 75 % | 0 % | 9 % | Non-Coding |
51 | NC_009766 | TAAA | 3 | 42850 | 42861 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
52 | NC_009766 | CAAA | 3 | 42925 | 42936 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | Non-Coding |
53 | NC_009766 | A | 15 | 43202 | 43216 | 15 | 100 % | 0 % | 0 % | 0 % | 6 % | Non-Coding |
54 | NC_009766 | TA | 6 | 43215 | 43227 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | Non-Coding |
55 | NC_009766 | CATC | 3 | 43314 | 43325 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | Non-Coding |
56 | NC_009766 | TAAGAA | 3 | 44275 | 44293 | 19 | 66.67 % | 16.67 % | 16.67 % | 0 % | 5 % | 156618831 |
57 | NC_009766 | T | 12 | 44658 | 44669 | 12 | 0 % | 100 % | 0 % | 0 % | 0 % | Non-Coding |
58 | NC_009766 | TAA | 4 | 45650 | 45660 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 156618833 |
59 | NC_009766 | TA | 6 | 45905 | 45915 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 156618833 |
60 | NC_009766 | AATA | 3 | 46073 | 46084 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
61 | NC_009766 | TAAA | 3 | 47218 | 47228 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
62 | NC_009766 | ATTT | 3 | 48065 | 48075 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
63 | NC_009766 | TAAA | 4 | 48305 | 48320 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | 156618836 |
64 | NC_009766 | T | 14 | 48614 | 48627 | 14 | 0 % | 100 % | 0 % | 0 % | 7 % | Non-Coding |
65 | NC_009766 | AAT | 4 | 49009 | 49019 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 156618837 |
66 | NC_009766 | GTCA | 3 | 49891 | 49901 | 11 | 25 % | 25 % | 25 % | 25 % | 9 % | 156618837 |
67 | NC_009766 | CCG | 4 | 52101 | 52111 | 11 | 0 % | 0 % | 33.33 % | 66.67 % | 9 % | 156618838 |
68 | NC_009766 | AATTT | 3 | 52967 | 52980 | 14 | 40 % | 60 % | 0 % | 0 % | 7 % | Non-Coding |
69 | NC_009766 | A | 12 | 53085 | 53096 | 12 | 100 % | 0 % | 0 % | 0 % | 0 % | Non-Coding |
70 | NC_009766 | TTA | 4 | 53098 | 53109 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 156618839 |
71 | NC_009766 | TAAA | 4 | 55008 | 55023 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | 156618840 |
72 | NC_009766 | TAAAAT | 3 | 55030 | 55048 | 19 | 66.67 % | 33.33 % | 0 % | 0 % | 5 % | Non-Coding |
73 | NC_009766 | AAGA | 3 | 55834 | 55844 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
74 | NC_009766 | GTTT | 3 | 56030 | 56040 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | Non-Coding |
75 | NC_009766 | TGT | 4 | 56052 | 56062 | 11 | 0 % | 66.67 % | 33.33 % | 0 % | 9 % | Non-Coding |
76 | NC_009766 | TTAT | 3 | 56621 | 56631 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
77 | NC_009766 | TCCA | 3 | 56940 | 56950 | 11 | 25 % | 25 % | 0 % | 50 % | 9 % | Non-Coding |
78 | NC_009766 | TTTA | 3 | 56951 | 56962 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
79 | NC_009766 | TA | 6 | 57192 | 57204 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | Non-Coding |
80 | NC_009766 | TG | 7 | 57630 | 57643 | 14 | 0 % | 50 % | 50 % | 0 % | 7 % | Non-Coding |
81 | NC_009766 | TTTA | 3 | 57648 | 57660 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | Non-Coding |
82 | NC_009766 | ATTTAT | 3 | 58028 | 58046 | 19 | 33.33 % | 66.67 % | 0 % | 0 % | 5 % | Non-Coding |
83 | NC_009766 | A | 12 | 58094 | 58105 | 12 | 100 % | 0 % | 0 % | 0 % | 8 % | Non-Coding |
84 | NC_009766 | AAAC | 3 | 58126 | 58137 | 12 | 75 % | 0 % | 0 % | 25 % | 0 % | Non-Coding |
85 | NC_009766 | ACT | 4 | 59179 | 59191 | 13 | 33.33 % | 33.33 % | 0 % | 33.33 % | 7 % | Non-Coding |
86 | NC_009766 | AT | 7 | 59822 | 59835 | 14 | 50 % | 50 % | 0 % | 0 % | 7 % | Non-Coding |
87 | NC_009766 | TTTGTT | 3 | 59878 | 59895 | 18 | 0 % | 83.33 % | 16.67 % | 0 % | 5 % | Non-Coding |
88 | NC_009766 | TTTA | 3 | 60676 | 60687 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 156618847 |
89 | NC_009766 | ATTT | 3 | 60689 | 60699 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 156618847 |
90 | NC_009766 | AATA | 3 | 60929 | 60940 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 156618847 |
91 | NC_009766 | TTTC | 3 | 61553 | 61563 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 156618847 |
92 | NC_009766 | AAT | 4 | 61587 | 61598 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 156618847 |
93 | NC_009766 | ATTT | 4 | 65003 | 65017 | 15 | 25 % | 75 % | 0 % | 0 % | 6 % | 156618847 |
94 | NC_009766 | TTTC | 3 | 65272 | 65282 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 156618847 |
95 | NC_009766 | AT | 7 | 67273 | 67285 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 156618847 |
96 | NC_009766 | ATTC | 3 | 67345 | 67357 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | 156618847 |
97 | NC_009766 | A | 15 | 68063 | 68077 | 15 | 100 % | 0 % | 0 % | 0 % | 0 % | 156618847 |
98 | NC_009766 | GTTTT | 3 | 68297 | 68311 | 15 | 0 % | 80 % | 20 % | 0 % | 6 % | 156618847 |
99 | NC_009766 | TTTA | 3 | 71910 | 71920 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 156618847 |
100 | NC_009766 | T | 13 | 72202 | 72214 | 13 | 0 % | 100 % | 0 % | 0 % | 0 % | 156618847 |
101 | NC_009766 | ATTG | 3 | 72257 | 72268 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 156618847 |
102 | NC_009766 | AAAT | 3 | 72665 | 72675 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 156618847 |
103 | NC_009766 | ATTC | 3 | 72700 | 72710 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 156618847 |
104 | NC_009766 | GATAT | 3 | 75621 | 75635 | 15 | 40 % | 40 % | 20 % | 0 % | 6 % | 156618847 |
105 | NC_009766 | ATA | 5 | 75847 | 75860 | 14 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 156618847 |
106 | NC_009766 | ATA | 4 | 75885 | 75898 | 14 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 156618847 |
107 | NC_009766 | T | 13 | 77719 | 77731 | 13 | 0 % | 100 % | 0 % | 0 % | 7 % | 156618847 |
108 | NC_009766 | TTTC | 3 | 79165 | 79176 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 156618847 |
109 | NC_009766 | CGAT | 3 | 82590 | 82602 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 156618847 |
110 | NC_009766 | AG | 6 | 84297 | 84308 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 156618847 |
111 | NC_009766 | CCCT | 3 | 86500 | 86510 | 11 | 0 % | 25 % | 0 % | 75 % | 9 % | 156618847 |
112 | NC_009766 | A | 16 | 87699 | 87714 | 16 | 100 % | 0 % | 0 % | 0 % | 6 % | 156618875 |
113 | NC_009766 | TTA | 4 | 89729 | 89741 | 13 | 33.33 % | 66.67 % | 0 % | 0 % | 7 % | 156618875 |
114 | NC_009766 | ATCC | 3 | 90190 | 90201 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 156618875 |
115 | NC_009766 | AAGG | 3 | 90721 | 90731 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 156618875 |
116 | NC_009766 | GAGG | 3 | 93408 | 93419 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 156618875 |
117 | NC_009766 | AGGT | 3 | 93614 | 93625 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 156618875 |
118 | NC_009766 | TAAG | 3 | 94739 | 94749 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 156618875 |
119 | NC_009766 | TGGG | 3 | 95541 | 95553 | 13 | 0 % | 25 % | 75 % | 0 % | 7 % | 156618875 |
120 | NC_009766 | CTT | 4 | 95941 | 95951 | 11 | 0 % | 66.67 % | 0 % | 33.33 % | 9 % | 156618875 |
121 | NC_009766 | A | 17 | 96142 | 96158 | 17 | 100 % | 0 % | 0 % | 0 % | 5 % | 156618875 |
122 | NC_009766 | ATTT | 3 | 96238 | 96249 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 156618875 |
123 | NC_009766 | TTTATT | 3 | 96470 | 96487 | 18 | 16.67 % | 83.33 % | 0 % | 0 % | 5 % | 156618875 |
124 | NC_009766 | TTTTC | 3 | 96660 | 96673 | 14 | 0 % | 80 % | 0 % | 20 % | 7 % | 156618875 |
125 | NC_009766 | AAAT | 3 | 97163 | 97173 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 156618875 |
126 | NC_009766 | AAAAG | 3 | 97708 | 97722 | 15 | 80 % | 0 % | 20 % | 0 % | 6 % | 156618875 |
127 | NC_009766 | ATT | 4 | 99925 | 99936 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 156618875 |
128 | NC_009766 | AATC | 3 | 101180 | 101191 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 156618875 |
129 | NC_009766 | AGAA | 3 | 101556 | 101568 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 156618875 |
130 | NC_009766 | A | 12 | 101790 | 101801 | 12 | 100 % | 0 % | 0 % | 0 % | 0 % | 156618875 |
131 | NC_009766 | TTACCT | 3 | 101825 | 101842 | 18 | 16.67 % | 50 % | 0 % | 33.33 % | 0 % | 156618875 |
132 | NC_009766 | GTT | 4 | 103483 | 103494 | 12 | 0 % | 66.67 % | 33.33 % | 0 % | 8 % | 156618875 |
133 | NC_009766 | TTTG | 3 | 103580 | 103590 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | 156618875 |
134 | NC_009766 | CTTA | 3 | 106241 | 106251 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 156618875 |
135 | NC_009766 | CCTT | 3 | 110259 | 110269 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 156618875 |
136 | NC_009766 | GGAT | 3 | 110789 | 110800 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 156618875 |
137 | NC_009766 | ATA | 4 | 111248 | 111260 | 13 | 66.67 % | 33.33 % | 0 % | 0 % | 7 % | 156618875 |
138 | NC_009766 | T | 12 | 113280 | 113291 | 12 | 0 % | 100 % | 0 % | 0 % | 0 % | 156618875 |
139 | NC_009766 | ATCT | 3 | 115668 | 115679 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
140 | NC_009766 | CATAC | 3 | 118817 | 118830 | 14 | 40 % | 20 % | 0 % | 40 % | 7 % | Non-Coding |
141 | NC_009766 | AGAT | 3 | 120110 | 120121 | 12 | 50 % | 25 % | 25 % | 0 % | 0 % | Non-Coding |