Tetra-nucleotide Imperfect Repeats of Rhodomonas salina chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_009573 | TGAG | 3 | 2642 | 2653 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 149071968 |
| 2 | NC_009573 | TAGA | 3 | 3972 | 3982 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 149072110 |
| 3 | NC_009573 | CTTT | 3 | 4933 | 4945 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 149072110 |
| 4 | NC_009573 | TACG | 3 | 6443 | 6453 | 11 | 25 % | 25 % | 25 % | 25 % | 9 % | 149071970 |
| 5 | NC_009573 | TTAA | 3 | 7408 | 7419 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 149071971 |
| 6 | NC_009573 | TTTA | 3 | 9086 | 9097 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 149071972 |
| 7 | NC_009573 | TTAG | 3 | 10907 | 10918 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 149072106 |
| 8 | NC_009573 | AGGA | 3 | 12362 | 12374 | 13 | 50 % | 0 % | 50 % | 0 % | 7 % | 149071973 |
| 9 | NC_009573 | ATTT | 3 | 15325 | 15335 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 10 | NC_009573 | TAAA | 3 | 15708 | 15720 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | Non-Coding |
| 11 | NC_009573 | AAAT | 3 | 19559 | 19570 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 12 | NC_009573 | AGCG | 3 | 21590 | 21600 | 11 | 25 % | 0 % | 50 % | 25 % | 9 % | Non-Coding |
| 13 | NC_009573 | AGGT | 3 | 22981 | 22992 | 12 | 25 % | 25 % | 50 % | 0 % | 0 % | Non-Coding |
| 14 | NC_009573 | GTAA | 3 | 25098 | 25109 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 15 | NC_009573 | TGAT | 3 | 25879 | 25889 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 149072097 |
| 16 | NC_009573 | TTGT | 3 | 30295 | 30305 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | 149072094 |
| 17 | NC_009573 | TATT | 3 | 30666 | 30677 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 149072094 |
| 18 | NC_009573 | TTCA | 3 | 31564 | 31575 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 19 | NC_009573 | ATTT | 3 | 40359 | 40370 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 149072085 |
| 20 | NC_009573 | TTAA | 3 | 41000 | 41010 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | Non-Coding |
| 21 | NC_009573 | CTAC | 3 | 42428 | 42439 | 12 | 25 % | 25 % | 0 % | 50 % | 0 % | Non-Coding |
| 22 | NC_009573 | AAAT | 3 | 46336 | 46347 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 23 | NC_009573 | CTCA | 3 | 48203 | 48213 | 11 | 25 % | 25 % | 0 % | 50 % | 9 % | 149071983 |
| 24 | NC_009573 | AAAT | 3 | 49126 | 49136 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 25 | NC_009573 | ACTA | 3 | 52614 | 52625 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 149071985 |
| 26 | NC_009573 | ATAA | 3 | 53484 | 53495 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 27 | NC_009573 | TTTA | 3 | 54908 | 54919 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 28 | NC_009573 | AATA | 3 | 56621 | 56632 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 149072082 |
| 29 | NC_009573 | AATT | 3 | 57373 | 57383 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 149072082 |
| 30 | NC_009573 | AATT | 3 | 58129 | 58140 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 31 | NC_009573 | ACAA | 3 | 61358 | 61368 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 32 | NC_009573 | TAAA | 4 | 62777 | 62792 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | Non-Coding |
| 33 | NC_009573 | TAAC | 3 | 69525 | 69535 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 149071991 |
| 34 | NC_009573 | CAAA | 3 | 70736 | 70746 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 35 | NC_009573 | TTTG | 3 | 73057 | 73067 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | 149072064 |
| 36 | NC_009573 | TTTC | 3 | 73184 | 73195 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 149072064 |
| 37 | NC_009573 | CTTT | 3 | 77018 | 77029 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 149072059 |
| 38 | NC_009573 | CGTC | 3 | 82720 | 82730 | 11 | 0 % | 25 % | 25 % | 50 % | 9 % | 149072057 |
| 39 | NC_009573 | GAAT | 3 | 93294 | 93304 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 40 | NC_009573 | ATTT | 3 | 93628 | 93638 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 149071998 |
| 41 | NC_009573 | GATA | 3 | 94218 | 94228 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 42 | NC_009573 | CTTT | 3 | 95191 | 95201 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 149071999 |
| 43 | NC_009573 | ATGC | 3 | 96621 | 96632 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | 149072051 |
| 44 | NC_009573 | TAAA | 3 | 99639 | 99650 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 45 | NC_009573 | TGTA | 3 | 100583 | 100593 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 149072049 |
| 46 | NC_009573 | CATA | 3 | 104218 | 104230 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 149072047 |
| 47 | NC_009573 | AAGT | 3 | 104508 | 104519 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 149072047 |
| 48 | NC_009573 | ACTA | 3 | 106334 | 106345 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 49 | NC_009573 | GAAA | 3 | 106495 | 106506 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 149072008 |
| 50 | NC_009573 | AAAG | 3 | 106513 | 106524 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 149072008 |
| 51 | NC_009573 | AATT | 3 | 113888 | 113899 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 149072017 |
| 52 | NC_009573 | AATG | 3 | 114177 | 114188 | 12 | 50 % | 25 % | 25 % | 0 % | 0 % | 149072018 |
| 53 | NC_009573 | AATA | 3 | 114398 | 114408 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 149072019 |
| 54 | NC_009573 | TTAA | 3 | 116076 | 116086 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | Non-Coding |
| 55 | NC_009573 | TTAA | 3 | 118580 | 118590 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 149072026 |
| 56 | NC_009573 | GAAA | 3 | 121846 | 121857 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 149072032 |
| 57 | NC_009573 | AAAG | 3 | 125266 | 125277 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 58 | NC_009573 | TAAA | 3 | 125279 | 125289 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 59 | NC_009573 | CTTT | 3 | 133038 | 133048 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 60 | NC_009573 | TCAT | 3 | 134442 | 134452 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 149071967 |