Tetra-nucleotide Imperfect Repeats of Hordeum vulgare subsp. vulgare chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_008590 | TTTC | 3 | 100 | 110 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 2 | NC_008590 | AAGT | 3 | 1318 | 1328 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 118430368 |
| 3 | NC_008590 | TTTA | 3 | 5006 | 5017 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 4 | NC_008590 | ATAA | 3 | 5862 | 5872 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 118430370 |
| 5 | NC_008590 | TTCT | 3 | 7402 | 7412 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 118430371 |
| 6 | NC_008590 | CTTT | 3 | 8249 | 8260 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 7 | NC_008590 | TTCT | 3 | 8305 | 8315 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 8 | NC_008590 | GAAA | 3 | 10620 | 10631 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 118430374 |
| 9 | NC_008590 | CTTT | 3 | 15362 | 15372 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 10 | NC_008590 | AAAT | 3 | 17196 | 17206 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 11 | NC_008590 | TTTC | 3 | 17534 | 17544 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 12 | NC_008590 | ATCA | 3 | 18172 | 18182 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 13 | NC_008590 | TTTC | 3 | 20689 | 20701 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 118430378 |
| 14 | NC_008590 | AGAA | 3 | 25287 | 25298 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 118430379 |
| 15 | NC_008590 | TTCA | 3 | 27941 | 27951 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 118430380 |
| 16 | NC_008590 | TTAA | 3 | 30182 | 30193 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 17 | NC_008590 | AGAA | 3 | 31172 | 31182 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 18 | NC_008590 | CTTT | 3 | 32942 | 32952 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 19 | NC_008590 | ATAA | 3 | 34165 | 34175 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 118430384 |
| 20 | NC_008590 | AAAG | 3 | 34236 | 34247 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 118430384 |
| 21 | NC_008590 | ATTG | 3 | 38619 | 38629 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 118430387 |
| 22 | NC_008590 | AAGA | 3 | 39866 | 39877 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 118430388 |
| 23 | NC_008590 | GACT | 3 | 39905 | 39916 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | 118430388 |
| 24 | NC_008590 | AATG | 3 | 40265 | 40276 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 118430388 |
| 25 | NC_008590 | CTAG | 3 | 40809 | 40821 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 118430388 |
| 26 | NC_008590 | TTTA | 3 | 42267 | 42277 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 27 | NC_008590 | TCCT | 3 | 43301 | 43312 | 12 | 0 % | 50 % | 0 % | 50 % | 0 % | 118430389 |
| 28 | NC_008590 | TTCA | 3 | 44577 | 44588 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 29 | NC_008590 | AGAA | 3 | 46863 | 46874 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 30 | NC_008590 | TTGA | 3 | 47188 | 47200 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 31 | NC_008590 | CAGA | 3 | 48959 | 48969 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 118430391 |
| 32 | NC_008590 | AATT | 3 | 54262 | 54273 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 33 | NC_008590 | TGCA | 3 | 55823 | 55835 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 118430396 |
| 34 | NC_008590 | AATA | 3 | 56600 | 56611 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 35 | NC_008590 | AAAG | 3 | 57751 | 57762 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 36 | NC_008590 | TTCA | 3 | 64665 | 64676 | 12 | 25 % | 50 % | 0 % | 25 % | 0 % | Non-Coding |
| 37 | NC_008590 | TTTA | 3 | 65104 | 65114 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 38 | NC_008590 | TATT | 3 | 65656 | 65666 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 39 | NC_008590 | GAAA | 3 | 65980 | 65991 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 118430408 |
| 40 | NC_008590 | TAAA | 3 | 66204 | 66215 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 41 | NC_008590 | ATGT | 3 | 68107 | 68117 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 118430432 |
| 42 | NC_008590 | AGAA | 3 | 68964 | 68975 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 118430432 |
| 43 | NC_008590 | ACTT | 3 | 71243 | 71253 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 118430432 |
| 44 | NC_008590 | GAAA | 4 | 72359 | 72374 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | 118430432 |
| 45 | NC_008590 | TTTC | 3 | 74816 | 74826 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 118430432 |
| 46 | NC_008590 | TTAT | 3 | 80478 | 80489 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 118430432 |
| 47 | NC_008590 | GAAA | 3 | 81562 | 81572 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 118430432 |
| 48 | NC_008590 | TTCT | 3 | 89774 | 89784 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 118430432 |
| 49 | NC_008590 | AAAC | 3 | 94658 | 94670 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 118430445 |
| 50 | NC_008590 | ATCC | 3 | 94792 | 94803 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 118430445 |
| 51 | NC_008590 | ACGG | 3 | 97911 | 97922 | 12 | 25 % | 0 % | 50 % | 25 % | 8 % | 118430445 |
| 52 | NC_008590 | AGGT | 3 | 98195 | 98206 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 118430445 |
| 53 | NC_008590 | AACG | 3 | 99520 | 99531 | 12 | 50 % | 0 % | 25 % | 25 % | 0 % | 118430445 |
| 54 | NC_008590 | AAAG | 4 | 100843 | 100858 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | 118430445 |
| 55 | NC_008590 | TCTA | 4 | 101420 | 101434 | 15 | 25 % | 50 % | 0 % | 25 % | 6 % | 118430445 |
| 56 | NC_008590 | GAAT | 3 | 102475 | 102485 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 118430445 |
| 57 | NC_008590 | AAGG | 3 | 102487 | 102498 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 118430445 |
| 58 | NC_008590 | CAAA | 3 | 106008 | 106019 | 12 | 75 % | 0 % | 0 % | 25 % | 0 % | 118430445 |
| 59 | NC_008590 | AGAA | 3 | 106540 | 106550 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 118430445 |
| 60 | NC_008590 | TTAA | 3 | 109343 | 109355 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 118430445 |
| 61 | NC_008590 | GTTT | 3 | 109640 | 109650 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | 118430445 |
| 62 | NC_008590 | TTTA | 3 | 110849 | 110860 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 118430445 |
| 63 | NC_008590 | ATTC | 3 | 115649 | 115659 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 118430445 |
| 64 | NC_008590 | AAAT | 3 | 116072 | 116082 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 118430445 |
| 65 | NC_008590 | TAGA | 4 | 116700 | 116714 | 15 | 50 % | 25 % | 25 % | 0 % | 6 % | 118430445 |
| 66 | NC_008590 | CTTT | 4 | 117276 | 117291 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | 118430445 |
| 67 | NC_008590 | TCGT | 3 | 118602 | 118613 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | 118430445 |
| 68 | NC_008590 | CTTA | 3 | 118809 | 118819 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 118430445 |
| 69 | NC_008590 | CCGT | 3 | 120212 | 120223 | 12 | 0 % | 25 % | 25 % | 50 % | 8 % | 118430445 |
| 70 | NC_008590 | GGAT | 3 | 123331 | 123342 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 118430445 |
| 71 | NC_008590 | AGAA | 3 | 128350 | 128360 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 118430446 |
| 72 | NC_008590 | TGAA | 3 | 133765 | 133776 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |