Tetra-nucleotide Imperfect Repeats of Coffea arabica chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_008535 | TTTA | 4 | 1387 | 1402 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 2 | NC_008535 | AAAT | 3 | 1532 | 1544 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | Non-Coding |
| 3 | NC_008535 | CATT | 3 | 3882 | 3893 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 4 | NC_008535 | AAAT | 3 | 4408 | 4419 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 5 | NC_008535 | TCAA | 3 | 4470 | 4481 | 12 | 50 % | 25 % | 0 % | 25 % | 0 % | Non-Coding |
| 6 | NC_008535 | AAAT | 3 | 4636 | 4648 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | Non-Coding |
| 7 | NC_008535 | AATA | 3 | 4802 | 4812 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 8 | NC_008535 | ATTT | 3 | 5878 | 5889 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 116617090 |
| 9 | NC_008535 | AAAT | 3 | 7153 | 7164 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 10 | NC_008535 | AAGA | 3 | 10400 | 10411 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 11 | NC_008535 | AATT | 3 | 12285 | 12297 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 116617094 |
| 12 | NC_008535 | CTTT | 3 | 12740 | 12751 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 116617094 |
| 13 | NC_008535 | ATTT | 3 | 12767 | 12777 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 116617094 |
| 14 | NC_008535 | AAAG | 3 | 13931 | 13942 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 15 | NC_008535 | CAAC | 3 | 13958 | 13969 | 12 | 50 % | 0 % | 0 % | 50 % | 0 % | Non-Coding |
| 16 | NC_008535 | TTTA | 3 | 14440 | 14451 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 17 | NC_008535 | TCCC | 3 | 14527 | 14537 | 11 | 0 % | 25 % | 0 % | 75 % | 9 % | Non-Coding |
| 18 | NC_008535 | TGTT | 3 | 16256 | 16266 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | 116617097 |
| 19 | NC_008535 | TCGC | 3 | 17249 | 17261 | 13 | 0 % | 25 % | 25 % | 50 % | 7 % | 116617098 |
| 20 | NC_008535 | TTCT | 3 | 30283 | 30294 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 21 | NC_008535 | CTCC | 3 | 30469 | 30479 | 11 | 0 % | 25 % | 0 % | 75 % | 9 % | Non-Coding |
| 22 | NC_008535 | ATTT | 3 | 33037 | 33048 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 23 | NC_008535 | GAAA | 3 | 34892 | 34903 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 116617104 |
| 24 | NC_008535 | CTTT | 3 | 37143 | 37154 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 25 | NC_008535 | CAAA | 3 | 37178 | 37188 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 26 | NC_008535 | AATG | 3 | 40785 | 40796 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 116617108 |
| 27 | NC_008535 | TTGA | 3 | 43024 | 43035 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | Non-Coding |
| 28 | NC_008535 | GAAT | 3 | 46645 | 46657 | 13 | 50 % | 25 % | 25 % | 0 % | 7 % | Non-Coding |
| 29 | NC_008535 | CTTT | 3 | 48559 | 48570 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 30 | NC_008535 | CAGA | 3 | 49541 | 49551 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 116617111 |
| 31 | NC_008535 | AAAT | 3 | 50977 | 50987 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 116617113 |
| 32 | NC_008535 | TTCA | 3 | 52208 | 52219 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 33 | NC_008535 | ATTT | 3 | 52454 | 52464 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 34 | NC_008535 | AAAT | 3 | 58133 | 58144 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 35 | NC_008535 | AAAT | 3 | 60415 | 60425 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 36 | NC_008535 | TATT | 3 | 64375 | 64386 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 37 | NC_008535 | ATTT | 3 | 69590 | 69600 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 38 | NC_008535 | TTAT | 3 | 71565 | 71576 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 116617154 |
| 39 | NC_008535 | TTGT | 3 | 71588 | 71599 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | 116617154 |
| 40 | NC_008535 | TAAA | 3 | 72424 | 72436 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 116617154 |
| 41 | NC_008535 | TTGG | 3 | 74553 | 74564 | 12 | 0 % | 50 % | 50 % | 0 % | 8 % | 116617154 |
| 42 | NC_008535 | TTTC | 3 | 76623 | 76633 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 116617154 |
| 43 | NC_008535 | AAAT | 3 | 82760 | 82770 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 116617154 |
| 44 | NC_008535 | TTAT | 3 | 82930 | 82941 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 116617154 |
| 45 | NC_008535 | ACTT | 3 | 83158 | 83168 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 116617154 |
| 46 | NC_008535 | CAAT | 3 | 83863 | 83873 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 116617154 |
| 47 | NC_008535 | ATCG | 3 | 89652 | 89664 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 116617154 |
| 48 | NC_008535 | AATA | 3 | 92798 | 92810 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 116617154 |
| 49 | NC_008535 | TTGA | 3 | 93687 | 93699 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 116617154 |
| 50 | NC_008535 | ATCC | 3 | 103425 | 103436 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 116617167 |
| 51 | NC_008535 | AAGG | 3 | 103951 | 103961 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 116617167 |
| 52 | NC_008535 | GAGG | 3 | 106682 | 106693 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 116617167 |
| 53 | NC_008535 | AGGT | 3 | 106894 | 106905 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 116617167 |
| 54 | NC_008535 | TAAG | 3 | 108014 | 108024 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 116617167 |
| 55 | NC_008535 | GGAA | 3 | 110111 | 110121 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 116617167 |
| 56 | NC_008535 | TAAA | 3 | 111119 | 111129 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 116617167 |
| 57 | NC_008535 | TTTA | 3 | 114759 | 114770 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 116617167 |
| 58 | NC_008535 | AGAT | 3 | 115260 | 115271 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 116617167 |
| 59 | NC_008535 | AAAT | 3 | 119638 | 119649 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 116617167 |
| 60 | NC_008535 | ATTT | 3 | 120018 | 120028 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 116617167 |
| 61 | NC_008535 | GAAT | 3 | 122152 | 122162 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 116617167 |
| 62 | NC_008535 | AAGA | 3 | 122217 | 122228 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 116617167 |
| 63 | NC_008535 | TTTA | 3 | 125658 | 125669 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 116617167 |
| 64 | NC_008535 | TTTG | 3 | 126379 | 126389 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | 116617167 |
| 65 | NC_008535 | AAGA | 3 | 126632 | 126643 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 116617167 |
| 66 | NC_008535 | AAAT | 3 | 126805 | 126817 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 116617167 |
| 67 | NC_008535 | AAAT | 3 | 129920 | 129931 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 116617167 |
| 68 | NC_008535 | TTCC | 3 | 130234 | 130244 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 116617167 |
| 69 | NC_008535 | AAGT | 3 | 131634 | 131644 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 116617167 |
| 70 | NC_008535 | AAGT | 3 | 131666 | 131676 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 116617167 |
| 71 | NC_008535 | CTTA | 3 | 132331 | 132341 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 116617167 |
| 72 | NC_008535 | CCTT | 3 | 136394 | 136404 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 116617167 |
| 73 | NC_008535 | GGAT | 3 | 136919 | 136930 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 116617167 |
| 74 | NC_008535 | CAAA | 3 | 140572 | 140583 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 116617167 |
| 75 | NC_008535 | GATC | 3 | 142299 | 142310 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | Non-Coding |
| 76 | NC_008535 | TCAA | 3 | 146656 | 146668 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 116617170 |
| 77 | NC_008535 | TATT | 3 | 147545 | 147557 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | 116617170 |
| 78 | NC_008535 | TGAT | 3 | 148529 | 148541 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 116617170 |
| 79 | NC_008535 | CGAT | 3 | 150691 | 150703 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 116617170 |
| 80 | NC_008535 | ATAA | 3 | 150921 | 150931 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 116617170 |
| 81 | NC_008535 | ATTT | 3 | 151330 | 151341 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 116617170 |