Tetra-nucleotide Imperfect Repeats of Nandina domestica chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_008336 | AAGT | 3 | 1171 | 1181 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 114329948 |
| 2 | NC_008336 | TGAA | 3 | 1971 | 1983 | 13 | 50 % | 25 % | 25 % | 0 % | 7 % | Non-Coding |
| 3 | NC_008336 | GAAA | 3 | 4802 | 4812 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 4 | NC_008336 | AAGA | 3 | 6839 | 6850 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 5 | NC_008336 | ATTT | 3 | 9570 | 9581 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 6 | NC_008336 | GTTT | 3 | 10236 | 10247 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | 114329953 |
| 7 | NC_008336 | ATAA | 5 | 11677 | 11696 | 20 | 75 % | 25 % | 0 % | 0 % | 5 % | Non-Coding |
| 8 | NC_008336 | AAAT | 3 | 13732 | 13743 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 9 | NC_008336 | TTAT | 3 | 15168 | 15179 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 10 | NC_008336 | AATC | 3 | 16204 | 16215 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 114329958 |
| 11 | NC_008336 | TTCA | 3 | 22295 | 22306 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 114329959 |
| 12 | NC_008336 | TCAT | 3 | 26563 | 26573 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 13 | NC_008336 | AGCT | 3 | 27062 | 27073 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | Non-Coding |
| 14 | NC_008336 | TTCT | 3 | 29872 | 29883 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 15 | NC_008336 | TTCA | 3 | 32464 | 32474 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 16 | NC_008336 | AACA | 3 | 33249 | 33259 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 17 | NC_008336 | GAAA | 3 | 35239 | 35250 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 114329964 |
| 18 | NC_008336 | GCTT | 3 | 35642 | 35652 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 114329964 |
| 19 | NC_008336 | AATG | 3 | 41153 | 41164 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 114329968 |
| 20 | NC_008336 | GAAT | 3 | 47210 | 47222 | 13 | 50 % | 25 % | 25 % | 0 % | 7 % | Non-Coding |
| 21 | NC_008336 | TTGA | 3 | 48219 | 48231 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 22 | NC_008336 | ATCT | 3 | 48397 | 48408 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 23 | NC_008336 | CTTT | 3 | 49573 | 49585 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | Non-Coding |
| 24 | NC_008336 | TATT | 3 | 49604 | 49615 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 25 | NC_008336 | TTTA | 3 | 56783 | 56793 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 26 | NC_008336 | GTTA | 3 | 59042 | 59052 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
| 27 | NC_008336 | TGAA | 3 | 61989 | 61999 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 28 | NC_008336 | GAAA | 3 | 63405 | 63417 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 114329981 |
| 29 | NC_008336 | ATGA | 3 | 67104 | 67114 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 30 | NC_008336 | TAAA | 3 | 67116 | 67126 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 31 | NC_008336 | TCTT | 3 | 67165 | 67175 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 32 | NC_008336 | ATAA | 3 | 67378 | 67388 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 33 | NC_008336 | TCTT | 3 | 67652 | 67663 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 34 | NC_008336 | CCTT | 3 | 68617 | 68629 | 13 | 0 % | 50 % | 0 % | 50 % | 7 % | Non-Coding |
| 35 | NC_008336 | AAAT | 3 | 70479 | 70489 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 36 | NC_008336 | GAAA | 3 | 71785 | 71795 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 114329992 |
| 37 | NC_008336 | ATAA | 3 | 72427 | 72438 | 12 | 75 % | 25 % | 0 % | 0 % | 0 % | 114329992 |
| 38 | NC_008336 | GTTG | 3 | 74750 | 74761 | 12 | 0 % | 50 % | 50 % | 0 % | 8 % | 114329992 |
| 39 | NC_008336 | TTTC | 3 | 76449 | 76459 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 114329992 |
| 40 | NC_008336 | CAAT | 3 | 84117 | 84127 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 114329992 |
| 41 | NC_008336 | TTCT | 3 | 89196 | 89206 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 114329992 |
| 42 | NC_008336 | CTTT | 3 | 90365 | 90375 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 114329992 |
| 43 | NC_008336 | TGAT | 3 | 92205 | 92217 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 114329992 |
| 44 | NC_008336 | AATA | 3 | 93094 | 93106 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 114329992 |
| 45 | NC_008336 | AATA | 3 | 94945 | 94956 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 114329992 |
| 46 | NC_008336 | ATCC | 3 | 104167 | 104178 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 114329993 |
| 47 | NC_008336 | TCTA | 3 | 104560 | 104571 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 114329993 |
| 48 | NC_008336 | AAGG | 3 | 104699 | 104709 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 114329993 |
| 49 | NC_008336 | GAGG | 3 | 107407 | 107418 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 114329993 |
| 50 | NC_008336 | AGGT | 3 | 107619 | 107630 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 114329993 |
| 51 | NC_008336 | TAAG | 3 | 108739 | 108749 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 114329993 |
| 52 | NC_008336 | ACAG | 3 | 108956 | 108967 | 12 | 50 % | 0 % | 25 % | 25 % | 8 % | 114329993 |
| 53 | NC_008336 | GGAA | 3 | 110817 | 110827 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 114329993 |
| 54 | NC_008336 | TTTA | 3 | 111794 | 111805 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 114329993 |
| 55 | NC_008336 | TCTT | 3 | 116173 | 116183 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 114329993 |
| 56 | NC_008336 | AATA | 3 | 118966 | 118977 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 114329993 |
| 57 | NC_008336 | TCTT | 3 | 122744 | 122755 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 114329993 |
| 58 | NC_008336 | ATTC | 3 | 125107 | 125117 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 114329993 |
| 59 | NC_008336 | TTTC | 3 | 126274 | 126284 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 114329993 |
| 60 | NC_008336 | TCAA | 3 | 126391 | 126401 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 114329993 |
| 61 | NC_008336 | TTTG | 3 | 127072 | 127083 | 12 | 0 % | 75 % | 25 % | 0 % | 0 % | 114329993 |
| 62 | NC_008336 | TAAT | 3 | 127555 | 127566 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 114329993 |
| 63 | NC_008336 | CATT | 3 | 127723 | 127734 | 12 | 25 % | 50 % | 0 % | 25 % | 0 % | 114329993 |
| 64 | NC_008336 | TTCC | 3 | 131246 | 131256 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 114329993 |
| 65 | NC_008336 | AGAT | 3 | 131367 | 131377 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 114329993 |
| 66 | NC_008336 | GTCT | 3 | 133104 | 133115 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 114329993 |
| 67 | NC_008336 | CTTA | 3 | 133324 | 133334 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 114329993 |
| 68 | NC_008336 | CCTT | 3 | 137364 | 137374 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 114329993 |
| 69 | NC_008336 | GGAT | 3 | 137895 | 137906 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 114329993 |
| 70 | NC_008336 | AGAA | 3 | 141561 | 141572 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 114329993 |
| 71 | NC_008336 | AAAT | 4 | 141586 | 141601 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | 114329993 |
| 72 | NC_008336 | CTTT | 3 | 149761 | 149771 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 114330032 |
| 73 | NC_008336 | TGAT | 3 | 149951 | 149963 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 114330032 |
| 74 | NC_008336 | AAAG | 3 | 151698 | 151708 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 114330032 |
| 75 | NC_008336 | ATTT | 3 | 152740 | 152751 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 114330032 |
| 76 | NC_008336 | AGTA | 3 | 154629 | 154639 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |