Tetra-nucleotide Imperfect Repeats of Oryza sativa Indica Group chloroplast
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| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_008155 | AAGT | 3 | 781 | 791 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 109156643 |
| 2 | NC_008155 | CATT | 3 | 3699 | 3710 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 3 | NC_008155 | TAAA | 4 | 4152 | 4167 | 16 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 4 | NC_008155 | TTTA | 3 | 4466 | 4477 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 5 | NC_008155 | ATAA | 3 | 5336 | 5346 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 6 | NC_008155 | CTTA | 3 | 5382 | 5394 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | Non-Coding |
| 7 | NC_008155 | TTCT | 3 | 8045 | 8055 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 8 | NC_008155 | TTTA | 3 | 8216 | 8226 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 9 | NC_008155 | GAAA | 3 | 10300 | 10311 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 109156585 |
| 10 | NC_008155 | CCCA | 3 | 12710 | 12721 | 12 | 25 % | 0 % | 0 % | 75 % | 8 % | Non-Coding |
| 11 | NC_008155 | TTTG | 3 | 13472 | 13482 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | Non-Coding |
| 12 | NC_008155 | CTTT | 3 | 15154 | 15165 | 12 | 0 % | 75 % | 0 % | 25 % | 0 % | Non-Coding |
| 13 | NC_008155 | GTAT | 3 | 16067 | 16077 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
| 14 | NC_008155 | TTTC | 3 | 16934 | 16944 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 15 | NC_008155 | AAAG | 3 | 17028 | 17039 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 16 | NC_008155 | TTTC | 3 | 19776 | 19788 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 109156587 |
| 17 | NC_008155 | GCGA | 3 | 28817 | 28829 | 13 | 25 % | 0 % | 50 % | 25 % | 7 % | 109156589 |
| 18 | NC_008155 | TTAA | 3 | 29335 | 29346 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 19 | NC_008155 | GAAA | 3 | 29428 | 29440 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | Non-Coding |
| 20 | NC_008155 | CTTT | 3 | 32280 | 32290 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 21 | NC_008155 | AAAG | 3 | 33567 | 33577 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 22 | NC_008155 | TTTC | 3 | 35909 | 35919 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 23 | NC_008155 | AAGA | 3 | 39196 | 39207 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 193885686 |
| 24 | NC_008155 | CTAG | 3 | 40139 | 40151 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 193885686 |
| 25 | NC_008155 | ATCA | 3 | 42152 | 42162 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 26 | NC_008155 | AAGA | 3 | 42305 | 42315 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 27 | NC_008155 | AACA | 3 | 44617 | 44627 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 28 | NC_008155 | TTGA | 3 | 46529 | 46541 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 29 | NC_008155 | CAGA | 3 | 48105 | 48115 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 127711707 |
| 30 | NC_008155 | TAGG | 4 | 51229 | 51244 | 16 | 25 % | 25 % | 50 % | 0 % | 6 % | Non-Coding |
| 31 | NC_008155 | AATT | 3 | 53372 | 53383 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 32 | NC_008155 | AATA | 4 | 55721 | 55737 | 17 | 75 % | 25 % | 0 % | 0 % | 5 % | Non-Coding |
| 33 | NC_008155 | AAAG | 3 | 56331 | 56341 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 34 | NC_008155 | TTCT | 3 | 59402 | 59413 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 35 | NC_008155 | ATTC | 3 | 59433 | 59443 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 36 | NC_008155 | TCTT | 3 | 60829 | 60839 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 37 | NC_008155 | TTCT | 3 | 63657 | 63668 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 109156608 |
| 38 | NC_008155 | GAAA | 3 | 64858 | 64868 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 39 | NC_008155 | TATT | 3 | 65011 | 65021 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 40 | NC_008155 | GAAA | 3 | 65338 | 65349 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 109156609 |
| 41 | NC_008155 | AGAA | 3 | 68307 | 68318 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | Non-Coding |
| 42 | NC_008155 | AAAG | 3 | 68446 | 68456 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 43 | NC_008155 | TTTA | 4 | 71655 | 71670 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 44 | NC_008155 | TTTC | 3 | 74221 | 74231 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 45 | NC_008155 | ATTT | 3 | 75888 | 75899 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 46 | NC_008155 | ATTT | 3 | 77167 | 77177 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 47 | NC_008155 | AATG | 3 | 80964 | 80974 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 48 | NC_008155 | TTCT | 3 | 88336 | 88346 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 112113313 |
| 49 | NC_008155 | AAAC | 3 | 93227 | 93239 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | Non-Coding |
| 50 | NC_008155 | ATCC | 3 | 93359 | 93370 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | Non-Coding |
| 51 | NC_008155 | CTAT | 3 | 93746 | 93757 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 52 | NC_008155 | ACGG | 3 | 96614 | 96625 | 12 | 25 % | 0 % | 50 % | 25 % | 8 % | Non-Coding |
| 53 | NC_008155 | AGGT | 3 | 96898 | 96909 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | Non-Coding |
| 54 | NC_008155 | AACG | 3 | 98223 | 98234 | 12 | 50 % | 0 % | 25 % | 25 % | 0 % | Non-Coding |
| 55 | NC_008155 | AAAG | 4 | 99554 | 99569 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | Non-Coding |
| 56 | NC_008155 | GAAT | 3 | 101163 | 101173 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 57 | NC_008155 | AAGG | 3 | 101175 | 101186 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | Non-Coding |
| 58 | NC_008155 | AATA | 3 | 103703 | 103714 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 59 | NC_008155 | CAAA | 3 | 104478 | 104489 | 12 | 75 % | 0 % | 0 % | 25 % | 0 % | 109156631 |
| 60 | NC_008155 | AAAT | 3 | 108603 | 108613 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 61 | NC_008155 | TAAC | 3 | 112039 | 112050 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 62 | NC_008155 | ATTC | 3 | 113877 | 113887 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 63 | NC_008155 | AAAT | 3 | 114292 | 114302 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 64 | NC_008155 | CTTT | 4 | 115481 | 115496 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | Non-Coding |
| 65 | NC_008155 | TCGT | 3 | 116815 | 116826 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | Non-Coding |
| 66 | NC_008155 | CTTA | 3 | 117022 | 117032 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 67 | NC_008155 | CCGT | 3 | 118425 | 118436 | 12 | 0 % | 25 % | 25 % | 50 % | 8 % | Non-Coding |
| 68 | NC_008155 | AGGA | 3 | 121457 | 121468 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | Non-Coding |
| 69 | NC_008155 | GGAT | 3 | 121680 | 121691 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | Non-Coding |
| 70 | NC_008155 | AGAA | 3 | 126704 | 126714 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 112113314 |
| 71 | NC_008155 | TGAA | 3 | 131275 | 131286 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 72 | NC_008155 | CTTT | 3 | 131293 | 131304 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 73 | NC_008155 | CATT | 3 | 134076 | 134086 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |