Tetra-nucleotide Imperfect Repeats of Phalaenopsis aphrodite subsp. formosana chloroplast
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| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_007499 | TTCT | 3 | 2883 | 2893 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 126165912 |
| 2 | NC_007499 | TATG | 3 | 3349 | 3360 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | Non-Coding |
| 3 | NC_007499 | AAAT | 3 | 4646 | 4656 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 4 | NC_007499 | TCTA | 4 | 5232 | 5246 | 15 | 25 % | 50 % | 0 % | 25 % | 6 % | 78103234 |
| 5 | NC_007499 | TTAT | 3 | 6572 | 6583 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 6 | NC_007499 | GTTT | 3 | 6769 | 6780 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | Non-Coding |
| 7 | NC_007499 | AATT | 3 | 8800 | 8810 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | Non-Coding |
| 8 | NC_007499 | TTTA | 4 | 8925 | 8940 | 16 | 25 % | 75 % | 0 % | 0 % | 0 % | Non-Coding |
| 9 | NC_007499 | CTAT | 3 | 10753 | 10764 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 10 | NC_007499 | TAGA | 3 | 11005 | 11015 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 78103238 |
| 11 | NC_007499 | GTCT | 3 | 11919 | 11930 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 78103238 |
| 12 | NC_007499 | AAAG | 3 | 13240 | 13250 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 78103239 |
| 13 | NC_007499 | AATA | 3 | 13842 | 13853 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 78103239 |
| 14 | NC_007499 | TTTC | 5 | 17040 | 17058 | 19 | 0 % | 75 % | 0 % | 25 % | 10 % | Non-Coding |
| 15 | NC_007499 | TCAA | 3 | 17355 | 17366 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 126165913 |
| 16 | NC_007499 | AAAT | 3 | 23170 | 23181 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 200004017 |
| 17 | NC_007499 | GAAA | 3 | 26892 | 26904 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 126165914 |
| 18 | NC_007499 | AGCT | 3 | 28120 | 28131 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | Non-Coding |
| 19 | NC_007499 | AAGT | 3 | 29402 | 29412 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 20 | NC_007499 | TCAT | 3 | 29909 | 29920 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 21 | NC_007499 | TTTC | 3 | 31055 | 31065 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 22 | NC_007499 | TCCT | 3 | 31363 | 31373 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | Non-Coding |
| 23 | NC_007499 | AAAG | 3 | 31856 | 31867 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 24 | NC_007499 | TAAA | 3 | 33059 | 33070 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 25 | NC_007499 | GAAA | 3 | 35888 | 35899 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 78103249 |
| 26 | NC_007499 | TTAT | 4 | 36873 | 36888 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | Non-Coding |
| 27 | NC_007499 | ATCT | 3 | 36889 | 36900 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 28 | NC_007499 | AAGA | 3 | 41212 | 41223 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 78103253 |
| 29 | NC_007499 | AATG | 3 | 41611 | 41622 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 78103253 |
| 30 | NC_007499 | AAGA | 3 | 44324 | 44334 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 78103254 |
| 31 | NC_007499 | GTAA | 3 | 44428 | 44438 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 78103254 |
| 32 | NC_007499 | CTTT | 3 | 44684 | 44695 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 78103254 |
| 33 | NC_007499 | AATC | 3 | 46095 | 46106 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | Non-Coding |
| 34 | NC_007499 | CTTT | 3 | 47603 | 47613 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 35 | NC_007499 | TTGA | 3 | 48462 | 48474 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 36 | NC_007499 | ATTC | 3 | 49068 | 49078 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 37 | NC_007499 | GATT | 3 | 50937 | 50948 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | Non-Coding |
| 38 | NC_007499 | TTAT | 3 | 51574 | 51585 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 39 | NC_007499 | TAAA | 3 | 51794 | 51804 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 40 | NC_007499 | TTCA | 3 | 55794 | 55804 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 41 | NC_007499 | TCAT | 3 | 60055 | 60065 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 42 | NC_007499 | AAAG | 3 | 60340 | 60351 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 43 | NC_007499 | TTAA | 3 | 60914 | 60925 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 44 | NC_007499 | ACTT | 3 | 64066 | 64076 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 45 | NC_007499 | GAAA | 3 | 64167 | 64177 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 78103308 |
| 46 | NC_007499 | ATTA | 4 | 68467 | 68481 | 15 | 50 % | 50 % | 0 % | 0 % | 6 % | Non-Coding |
| 47 | NC_007499 | GAAA | 3 | 68857 | 68868 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 78103271 |
| 48 | NC_007499 | TCTT | 3 | 69479 | 69490 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 49 | NC_007499 | TTTC | 3 | 70044 | 70056 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 78103310 |
| 50 | NC_007499 | AAAG | 3 | 70212 | 70222 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 78103310 |
| 51 | NC_007499 | TAGA | 3 | 70647 | 70657 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 52 | NC_007499 | TATC | 3 | 71319 | 71330 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 78103327 |
| 53 | NC_007499 | TTTA | 3 | 71574 | 71585 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 78103327 |
| 54 | NC_007499 | ATCA | 3 | 73590 | 73602 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 78103327 |
| 55 | NC_007499 | ATTC | 3 | 74360 | 74371 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 78103327 |
| 56 | NC_007499 | ATTT | 3 | 75497 | 75508 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 78103327 |
| 57 | NC_007499 | ATCT | 3 | 75603 | 75613 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 78103327 |
| 58 | NC_007499 | TATT | 3 | 78103 | 78113 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 78103327 |
| 59 | NC_007499 | CATC | 3 | 78254 | 78265 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 78103327 |
| 60 | NC_007499 | AATG | 3 | 78783 | 78793 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 78103327 |
| 61 | NC_007499 | AATC | 4 | 80035 | 80050 | 16 | 50 % | 25 % | 0 % | 25 % | 6 % | 78103327 |
| 62 | NC_007499 | TTTC | 3 | 81830 | 81842 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 78103327 |
| 63 | NC_007499 | TTTA | 3 | 82414 | 82424 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 78103327 |
| 64 | NC_007499 | GAAA | 3 | 82987 | 82997 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 78103327 |
| 65 | NC_007499 | TTCT | 3 | 84447 | 84458 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 78103327 |
| 66 | NC_007499 | AATG | 3 | 86593 | 86603 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 78103327 |
| 67 | NC_007499 | GCAA | 3 | 89056 | 89066 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 78103327 |
| 68 | NC_007499 | TTCT | 3 | 90330 | 90340 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 78103327 |
| 69 | NC_007499 | GAAA | 3 | 90454 | 90466 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 78103327 |
| 70 | NC_007499 | TGAT | 3 | 93345 | 93357 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 78103327 |
| 71 | NC_007499 | TTTC | 3 | 94290 | 94301 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 78103327 |
| 72 | NC_007499 | TCTA | 3 | 96429 | 96440 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 78103327 |
| 73 | NC_007499 | TTTC | 3 | 101428 | 101438 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 78103326 |
| 74 | NC_007499 | TCTA | 3 | 105649 | 105660 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 78103326 |
| 75 | NC_007499 | GAGG | 3 | 108498 | 108509 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 78103326 |
| 76 | NC_007499 | AGGT | 3 | 108710 | 108721 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 78103326 |
| 77 | NC_007499 | TAAG | 3 | 109830 | 109840 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 78103326 |
| 78 | NC_007499 | ATGA | 5 | 111259 | 111277 | 19 | 50 % | 25 % | 25 % | 0 % | 10 % | 78103326 |
| 79 | NC_007499 | TTGA | 3 | 111745 | 111755 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 78103326 |
| 80 | NC_007499 | TAAA | 4 | 113928 | 113942 | 15 | 75 % | 25 % | 0 % | 0 % | 6 % | 78103326 |
| 81 | NC_007499 | ATGA | 3 | 115790 | 115801 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 78103326 |
| 82 | NC_007499 | AATA | 3 | 117015 | 117026 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 78103326 |
| 83 | NC_007499 | TAAA | 3 | 117029 | 117039 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 78103326 |
| 84 | NC_007499 | TATT | 3 | 118137 | 118147 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 78103326 |
| 85 | NC_007499 | AATT | 3 | 118929 | 118939 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 78103326 |
| 86 | NC_007499 | TTAT | 3 | 119236 | 119247 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 78103326 |
| 87 | NC_007499 | GAAT | 3 | 119334 | 119345 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 78103326 |
| 88 | NC_007499 | CATT | 3 | 119496 | 119507 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 78103326 |
| 89 | NC_007499 | AAAT | 3 | 120278 | 120288 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 78103326 |
| 90 | NC_007499 | TCTT | 3 | 121547 | 121557 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 78103326 |
| 91 | NC_007499 | TTTC | 3 | 122174 | 122186 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 78103326 |
| 92 | NC_007499 | ATTT | 3 | 123152 | 123162 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 78103326 |
| 93 | NC_007499 | ATTC | 4 | 123643 | 123657 | 15 | 25 % | 50 % | 0 % | 25 % | 6 % | 78103326 |
| 94 | NC_007499 | CTTA | 3 | 125082 | 125092 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 78103326 |
| 95 | NC_007499 | TAGA | 3 | 138482 | 138493 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 96 | NC_007499 | TGAA | 3 | 140620 | 140631 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 78103300 |
| 97 | NC_007499 | ATCA | 3 | 141565 | 141577 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 78103300 |
| 98 | NC_007499 | TGAT | 3 | 141660 | 141672 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 78103300 |
| 99 | NC_007499 | TTGC | 3 | 145856 | 145866 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 78103300 |
| 100 | NC_007499 | CATT | 3 | 148319 | 148329 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |