Tetra-nucleotide Imperfect Repeats of Saccharum hybrid cultivar NCo 310 chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_006084 | AAGT | 3 | 790 | 800 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 2 | NC_006084 | TTTA | 3 | 4477 | 4488 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 3 | NC_006084 | TTCT | 3 | 5123 | 5133 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 50812507 |
| 4 | NC_006084 | AGAA | 3 | 6176 | 6187 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | Non-Coding |
| 5 | NC_006084 | AAAT | 3 | 6192 | 6202 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 6 | NC_006084 | ATTT | 3 | 8887 | 8898 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 7 | NC_006084 | TTTA | 3 | 9187 | 9198 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 8 | NC_006084 | GAAA | 3 | 10886 | 10897 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 50812512 |
| 9 | NC_006084 | ATTT | 3 | 11857 | 11867 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 10 | NC_006084 | ATGA | 3 | 11936 | 11947 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 11 | NC_006084 | CCTT | 3 | 14781 | 14792 | 12 | 0 % | 50 % | 0 % | 50 % | 8 % | Non-Coding |
| 12 | NC_006084 | AAAG | 3 | 14816 | 14826 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 13 | NC_006084 | TAGG | 3 | 15328 | 15339 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | Non-Coding |
| 14 | NC_006084 | CAAT | 3 | 16684 | 16696 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | Non-Coding |
| 15 | NC_006084 | GTAT | 3 | 17458 | 17468 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
| 16 | NC_006084 | AAAG | 3 | 19117 | 19128 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 17 | NC_006084 | ATCA | 3 | 19721 | 19731 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | Non-Coding |
| 18 | NC_006084 | CTTT | 3 | 20085 | 20096 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 19 | NC_006084 | TAAA | 3 | 20403 | 20414 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 20 | NC_006084 | CTTT | 3 | 20776 | 20787 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 21 | NC_006084 | TTTC | 3 | 22522 | 22534 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 50812518 |
| 22 | NC_006084 | AAAT | 3 | 26870 | 26881 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 50812519 |
| 23 | NC_006084 | AGAA | 3 | 27120 | 27131 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 50812519 |
| 24 | NC_006084 | GTTC | 3 | 29166 | 29176 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 50812520 |
| 25 | NC_006084 | TTCA | 3 | 29902 | 29912 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 50812520 |
| 26 | NC_006084 | TTAA | 3 | 32177 | 32188 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 27 | NC_006084 | GAAA | 3 | 32320 | 32330 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 28 | NC_006084 | CTTT | 3 | 35160 | 35170 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 29 | NC_006084 | CTTT | 3 | 35565 | 35575 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 30 | NC_006084 | CATA | 3 | 36459 | 36469 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 50812524 |
| 31 | NC_006084 | AAAG | 3 | 36475 | 36486 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 50812524 |
| 32 | NC_006084 | AAAT | 3 | 39662 | 39673 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 50812527 |
| 33 | NC_006084 | AAGA | 3 | 42141 | 42152 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 50812528 |
| 34 | NC_006084 | CTAG | 3 | 43084 | 43096 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 50812528 |
| 35 | NC_006084 | ATCA | 3 | 45100 | 45110 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 50812529 |
| 36 | NC_006084 | TCCT | 3 | 45521 | 45532 | 12 | 0 % | 50 % | 0 % | 50 % | 0 % | 50812529 |
| 37 | NC_006084 | AAAG | 3 | 47587 | 47597 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 38 | NC_006084 | AGAA | 3 | 49239 | 49250 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 39 | NC_006084 | GAAT | 3 | 49441 | 49451 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 40 | NC_006084 | TTGA | 3 | 49556 | 49568 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 41 | NC_006084 | CTTT | 3 | 50094 | 50105 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 42 | NC_006084 | CTTT | 3 | 52892 | 52903 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 43 | NC_006084 | AGAA | 3 | 53052 | 53062 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 44 | NC_006084 | TTTA | 3 | 53232 | 53242 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 45 | NC_006084 | TTCT | 3 | 53492 | 53502 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 46 | NC_006084 | ATTT | 3 | 53871 | 53881 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 47 | NC_006084 | TAGG | 4 | 54634 | 54649 | 16 | 25 % | 25 % | 50 % | 0 % | 6 % | Non-Coding |
| 48 | NC_006084 | AATT | 3 | 56770 | 56781 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 49 | NC_006084 | TTAT | 3 | 59905 | 59916 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 50812537 |
| 50 | NC_006084 | ATTC | 3 | 62033 | 62043 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 51 | NC_006084 | TTTC | 3 | 65699 | 65709 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 52 | NC_006084 | GAAA | 3 | 68747 | 68757 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 53 | NC_006084 | AGAA | 3 | 70894 | 70905 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 50812583 |
| 54 | NC_006084 | ACTT | 3 | 73196 | 73206 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 50812583 |
| 55 | NC_006084 | CTTT | 4 | 76767 | 76781 | 15 | 0 % | 75 % | 0 % | 25 % | 6 % | 50812583 |
| 56 | NC_006084 | ATTT | 3 | 81684 | 81695 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 50812583 |
| 57 | NC_006084 | CTTT | 3 | 81723 | 81733 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 50812583 |
| 58 | NC_006084 | GATC | 3 | 88146 | 88157 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | 50812583 |
| 59 | NC_006084 | TTCT | 3 | 92911 | 92921 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 50812583 |
| 60 | NC_006084 | TCTA | 3 | 94620 | 94631 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 50812551 |
| 61 | NC_006084 | AAAC | 3 | 97837 | 97849 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 50812551 |
| 62 | NC_006084 | ATCC | 3 | 97971 | 97982 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 50812551 |
| 63 | NC_006084 | CTAT | 3 | 98359 | 98370 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 50812551 |
| 64 | NC_006084 | ACGG | 3 | 101228 | 101239 | 12 | 25 % | 0 % | 50 % | 25 % | 8 % | 50812551 |
| 65 | NC_006084 | AGGT | 3 | 101512 | 101523 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 50812551 |
| 66 | NC_006084 | AACG | 3 | 102837 | 102848 | 12 | 50 % | 0 % | 25 % | 25 % | 0 % | 50812551 |
| 67 | NC_006084 | AAAG | 4 | 104170 | 104185 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | 50812551 |
| 68 | NC_006084 | CAAA | 3 | 108134 | 108144 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | 50812551 |
| 69 | NC_006084 | ATTG | 3 | 108384 | 108395 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | 50812551 |
| 70 | NC_006084 | GCAA | 3 | 109048 | 109058 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 50812551 |
| 71 | NC_006084 | ATTT | 3 | 110837 | 110847 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 50812551 |
| 72 | NC_006084 | ATTG | 3 | 113235 | 113247 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 50812551 |
| 73 | NC_006084 | TTTA | 3 | 113686 | 113697 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 50812551 |
| 74 | NC_006084 | ATCC | 3 | 117870 | 117881 | 12 | 25 % | 25 % | 0 % | 50 % | 0 % | 50812551 |
| 75 | NC_006084 | AAAT | 3 | 118833 | 118843 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 50812551 |
| 76 | NC_006084 | CTTT | 4 | 120046 | 120061 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | 50812551 |
| 77 | NC_006084 | TCGT | 3 | 121382 | 121393 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | 50812551 |
| 78 | NC_006084 | CTTA | 3 | 121589 | 121599 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 50812551 |
| 79 | NC_006084 | CCGT | 3 | 122992 | 123003 | 12 | 0 % | 25 % | 25 % | 50 % | 8 % | 50812551 |
| 80 | NC_006084 | AGAA | 3 | 125766 | 125776 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 50812551 |
| 81 | NC_006084 | AGGA | 3 | 126025 | 126036 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 50812551 |
| 82 | NC_006084 | GGAT | 3 | 126249 | 126260 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 50812551 |
| 83 | NC_006084 | AGAA | 3 | 131310 | 131320 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 50812608 |
| 84 | NC_006084 | TGAA | 3 | 137969 | 137980 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 50812615 |