Tetra-nucleotide Imperfect Repeats of Oryza nivara chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_005973 | AAGT | 3 | 781 | 791 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 50233948 |
| 2 | NC_005973 | CATT | 3 | 3698 | 3709 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 3 | NC_005973 | TAAA | 4 | 4151 | 4166 | 16 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 4 | NC_005973 | TTTA | 3 | 4465 | 4476 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 5 | NC_005973 | ATAA | 3 | 5334 | 5344 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 50233950 |
| 6 | NC_005973 | CTTA | 3 | 5380 | 5392 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | 50233950 |
| 7 | NC_005973 | TTCT | 3 | 8043 | 8053 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 8 | NC_005973 | TTTA | 3 | 8214 | 8224 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 9 | NC_005973 | GAAA | 3 | 10298 | 10309 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 50233955 |
| 10 | NC_005973 | CCCA | 3 | 12713 | 12724 | 12 | 25 % | 0 % | 0 % | 75 % | 8 % | Non-Coding |
| 11 | NC_005973 | TTTG | 3 | 13475 | 13485 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | Non-Coding |
| 12 | NC_005973 | CTTT | 3 | 15157 | 15168 | 12 | 0 % | 75 % | 0 % | 25 % | 0 % | Non-Coding |
| 13 | NC_005973 | GTAT | 3 | 16074 | 16084 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
| 14 | NC_005973 | TTTC | 3 | 16940 | 16950 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 15 | NC_005973 | AAAG | 3 | 17034 | 17045 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 16 | NC_005973 | TTTC | 3 | 19750 | 19762 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 50233961 |
| 17 | NC_005973 | GCGA | 3 | 28791 | 28803 | 13 | 25 % | 0 % | 50 % | 25 % | 7 % | 50233963 |
| 18 | NC_005973 | TTAA | 3 | 29309 | 29320 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 19 | NC_005973 | GAAA | 3 | 29402 | 29414 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | Non-Coding |
| 20 | NC_005973 | CTTT | 3 | 32254 | 32264 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 21 | NC_005973 | AAAG | 3 | 33541 | 33551 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 50233967 |
| 22 | NC_005973 | TTTC | 3 | 35883 | 35893 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 23 | NC_005973 | AAGA | 3 | 39170 | 39181 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 50233971 |
| 24 | NC_005973 | CTAG | 3 | 40113 | 40125 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 50233971 |
| 25 | NC_005973 | ATCA | 3 | 42126 | 42136 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 50233972 |
| 26 | NC_005973 | AAGA | 3 | 42279 | 42289 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 50233972 |
| 27 | NC_005973 | AACA | 3 | 44590 | 44600 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 28 | NC_005973 | TTGA | 3 | 46508 | 46520 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 29 | NC_005973 | CAGA | 3 | 48084 | 48094 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 50233974 |
| 30 | NC_005973 | TAGG | 4 | 51208 | 51223 | 16 | 25 % | 25 % | 50 % | 0 % | 6 % | Non-Coding |
| 31 | NC_005973 | AATT | 3 | 53351 | 53362 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 32 | NC_005973 | AATA | 4 | 55700 | 55716 | 17 | 75 % | 25 % | 0 % | 0 % | 5 % | Non-Coding |
| 33 | NC_005973 | AAAG | 3 | 56310 | 56320 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 34 | NC_005973 | TTCT | 3 | 59381 | 59392 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 35 | NC_005973 | ATTC | 3 | 59412 | 59422 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 36 | NC_005973 | TCTT | 3 | 60808 | 60818 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 37 | NC_005973 | TTCT | 3 | 63636 | 63647 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 38 | NC_005973 | GAAA | 3 | 64837 | 64847 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 39 | NC_005973 | TATT | 3 | 64990 | 65000 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 40 | NC_005973 | GAAA | 3 | 65317 | 65328 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 50233993 |
| 41 | NC_005973 | AGAA | 3 | 68286 | 68297 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 50234025 |
| 42 | NC_005973 | AAAG | 3 | 68425 | 68435 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 50234025 |
| 43 | NC_005973 | TTTA | 4 | 71634 | 71649 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | 50234025 |
| 44 | NC_005973 | TTTC | 3 | 74201 | 74211 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 50234025 |
| 45 | NC_005973 | ATTT | 3 | 75868 | 75879 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 50234025 |
| 46 | NC_005973 | ATTT | 3 | 77169 | 77179 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 50234025 |
| 47 | NC_005973 | AATG | 3 | 80960 | 80970 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 50234025 |
| 48 | NC_005973 | TTCT | 3 | 88331 | 88341 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 50234025 |
| 49 | NC_005973 | AAAC | 3 | 93222 | 93234 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 59561393 |
| 50 | NC_005973 | ATCC | 3 | 93354 | 93365 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 59561393 |
| 51 | NC_005973 | CTAT | 3 | 93741 | 93752 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 59561393 |
| 52 | NC_005973 | ACGG | 3 | 96609 | 96620 | 12 | 25 % | 0 % | 50 % | 25 % | 8 % | 59561393 |
| 53 | NC_005973 | AGGT | 3 | 96893 | 96904 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 59561393 |
| 54 | NC_005973 | AACG | 3 | 98218 | 98229 | 12 | 50 % | 0 % | 25 % | 25 % | 0 % | 59561393 |
| 55 | NC_005973 | AAAG | 4 | 99549 | 99564 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | 59561393 |
| 56 | NC_005973 | GAAT | 3 | 101158 | 101168 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 59561393 |
| 57 | NC_005973 | AAGG | 3 | 101170 | 101181 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 59561393 |
| 58 | NC_005973 | AATA | 3 | 103698 | 103709 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 59561393 |
| 59 | NC_005973 | CAAA | 3 | 104472 | 104483 | 12 | 75 % | 0 % | 0 % | 25 % | 0 % | 59561393 |
| 60 | NC_005973 | AAAT | 3 | 108597 | 108607 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 59561393 |
| 61 | NC_005973 | TAAC | 3 | 112033 | 112044 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 59561393 |
| 62 | NC_005973 | ATTC | 3 | 113871 | 113881 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 59561393 |
| 63 | NC_005973 | AAAT | 3 | 114286 | 114296 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 59561393 |
| 64 | NC_005973 | CTTT | 4 | 115475 | 115490 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | 59561393 |
| 65 | NC_005973 | TCGT | 3 | 116809 | 116820 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | 59561393 |
| 66 | NC_005973 | CTTA | 3 | 117016 | 117026 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 59561393 |
| 67 | NC_005973 | CCGT | 3 | 118419 | 118430 | 12 | 0 % | 25 % | 25 % | 50 % | 8 % | 59561393 |
| 68 | NC_005973 | AGGA | 3 | 121451 | 121462 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 59561393 |
| 69 | NC_005973 | GGAT | 3 | 121674 | 121685 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 59561393 |
| 70 | NC_005973 | AGAA | 3 | 126698 | 126708 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 50234053 |
| 71 | NC_005973 | TGAA | 3 | 131268 | 131279 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 50234056 |
| 72 | NC_005973 | CTTT | 3 | 131286 | 131297 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 50234056 |
| 73 | NC_005973 | CATT | 3 | 134069 | 134079 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 50234064 |