Tetra-nucleotide Imperfect Repeats of Saccharum hybrid cultivar SP-80-3280 chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_005878 | ATTT | 3 | 2127 | 2138 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 2 | NC_005878 | CTTT | 3 | 2166 | 2176 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 3 | NC_005878 | GATC | 3 | 8589 | 8600 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | Non-Coding |
| 4 | NC_005878 | TTCT | 3 | 13354 | 13364 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 48478721 |
| 5 | NC_005878 | TCTA | 3 | 15063 | 15074 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 6 | NC_005878 | AAAC | 3 | 18280 | 18292 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 48478723 |
| 7 | NC_005878 | ATCC | 3 | 18414 | 18425 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 48478723 |
| 8 | NC_005878 | CTAT | 3 | 18802 | 18813 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 9 | NC_005878 | ACGG | 3 | 21671 | 21682 | 12 | 25 % | 0 % | 50 % | 25 % | 8 % | Non-Coding |
| 10 | NC_005878 | AGGT | 3 | 21955 | 21966 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | Non-Coding |
| 11 | NC_005878 | AACG | 3 | 23280 | 23291 | 12 | 50 % | 0 % | 25 % | 25 % | 0 % | Non-Coding |
| 12 | NC_005878 | AAAG | 4 | 24613 | 24628 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | Non-Coding |
| 13 | NC_005878 | CAAA | 3 | 28577 | 28587 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 14 | NC_005878 | ATTG | 3 | 28827 | 28838 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | Non-Coding |
| 15 | NC_005878 | GCAA | 3 | 29491 | 29501 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 48478729 |
| 16 | NC_005878 | ATTT | 3 | 31280 | 31290 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 17 | NC_005878 | ATTG | 3 | 33678 | 33690 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 48478733 |
| 18 | NC_005878 | TTTA | 3 | 34129 | 34140 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 19 | NC_005878 | ATCC | 3 | 38313 | 38324 | 12 | 25 % | 25 % | 0 % | 50 % | 0 % | 48478737 |
| 20 | NC_005878 | AAAT | 3 | 39276 | 39286 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | Non-Coding |
| 21 | NC_005878 | CTTT | 4 | 40489 | 40504 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | Non-Coding |
| 22 | NC_005878 | TCGT | 3 | 41825 | 41836 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | Non-Coding |
| 23 | NC_005878 | CTTA | 3 | 42032 | 42042 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 24 | NC_005878 | CCGT | 3 | 43435 | 43446 | 12 | 0 % | 25 % | 25 % | 50 % | 8 % | Non-Coding |
| 25 | NC_005878 | AGAA | 3 | 46210 | 46220 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 26 | NC_005878 | AGGA | 3 | 46469 | 46480 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 48478742 |
| 27 | NC_005878 | GGAT | 3 | 46693 | 46704 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 48478742 |
| 28 | NC_005878 | AGAA | 3 | 51754 | 51764 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 48478793 |
| 29 | NC_005878 | TGAA | 3 | 58413 | 58424 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 48478793 |
| 30 | NC_005878 | AAGT | 3 | 62416 | 62426 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 48478793 |
| 31 | NC_005878 | TTTA | 3 | 66103 | 66114 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 48478793 |
| 32 | NC_005878 | TTCT | 3 | 66749 | 66759 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 48478793 |
| 33 | NC_005878 | AGAA | 3 | 67802 | 67813 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 48478793 |
| 34 | NC_005878 | AAAT | 3 | 67818 | 67828 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 48478793 |
| 35 | NC_005878 | ATTT | 3 | 70513 | 70524 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 48478793 |
| 36 | NC_005878 | TTTA | 3 | 70813 | 70824 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 48478793 |
| 37 | NC_005878 | GAAA | 3 | 72512 | 72523 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 48478793 |
| 38 | NC_005878 | ATTT | 3 | 73484 | 73494 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 48478793 |
| 39 | NC_005878 | ATGA | 3 | 73563 | 73574 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 48478793 |
| 40 | NC_005878 | CCTT | 3 | 76408 | 76419 | 12 | 0 % | 50 % | 0 % | 50 % | 8 % | 48478793 |
| 41 | NC_005878 | AAAG | 3 | 76443 | 76453 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 48478793 |
| 42 | NC_005878 | TAGG | 3 | 76955 | 76966 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 48478793 |
| 43 | NC_005878 | CAAT | 3 | 78311 | 78323 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 48478793 |
| 44 | NC_005878 | GTAT | 3 | 79085 | 79095 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 48478793 |
| 45 | NC_005878 | AAAG | 3 | 80744 | 80755 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 48478793 |
| 46 | NC_005878 | ATCA | 3 | 81348 | 81358 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 48478793 |
| 47 | NC_005878 | CTTT | 3 | 81712 | 81723 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 48478793 |
| 48 | NC_005878 | TAAA | 3 | 82030 | 82041 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 48478793 |
| 49 | NC_005878 | CTTT | 3 | 82403 | 82414 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 48478793 |
| 50 | NC_005878 | TTTC | 3 | 84149 | 84161 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 48478793 |
| 51 | NC_005878 | AAAT | 3 | 88497 | 88508 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 48478793 |
| 52 | NC_005878 | AGAA | 3 | 88747 | 88758 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 48478793 |
| 53 | NC_005878 | GTTC | 3 | 90793 | 90803 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 48478793 |
| 54 | NC_005878 | TTCA | 3 | 91529 | 91539 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 48478793 |
| 55 | NC_005878 | TTAA | 3 | 93804 | 93815 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 48478793 |
| 56 | NC_005878 | GAAA | 3 | 93947 | 93957 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 48478793 |
| 57 | NC_005878 | CTTT | 3 | 96787 | 96797 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 48478793 |
| 58 | NC_005878 | CTTT | 3 | 97192 | 97202 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 48478793 |
| 59 | NC_005878 | CATA | 3 | 98086 | 98096 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 48478793 |
| 60 | NC_005878 | AAAG | 3 | 98102 | 98113 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 48478793 |
| 61 | NC_005878 | AAAT | 3 | 101289 | 101300 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 48478793 |
| 62 | NC_005878 | AAGA | 3 | 103768 | 103779 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 48478793 |
| 63 | NC_005878 | CTAG | 3 | 104711 | 104723 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 48478793 |
| 64 | NC_005878 | ATCA | 3 | 106727 | 106737 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 48478793 |
| 65 | NC_005878 | TCCT | 3 | 107148 | 107159 | 12 | 0 % | 50 % | 0 % | 50 % | 0 % | 48478793 |
| 66 | NC_005878 | AAAG | 3 | 109214 | 109224 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 48478793 |
| 67 | NC_005878 | AGAA | 3 | 110866 | 110877 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 48478793 |
| 68 | NC_005878 | GAAT | 3 | 111068 | 111078 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 48478793 |
| 69 | NC_005878 | TTGA | 3 | 111183 | 111195 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 48478793 |
| 70 | NC_005878 | CTTT | 3 | 111721 | 111732 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 48478793 |
| 71 | NC_005878 | CTTT | 3 | 114519 | 114530 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 48478793 |
| 72 | NC_005878 | AGAA | 3 | 114679 | 114689 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 48478793 |
| 73 | NC_005878 | TTTA | 3 | 114859 | 114869 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 48478793 |
| 74 | NC_005878 | TTCT | 3 | 115119 | 115129 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 48478793 |
| 75 | NC_005878 | ATTT | 3 | 115498 | 115508 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 48478793 |
| 76 | NC_005878 | TAGG | 4 | 116261 | 116276 | 16 | 25 % | 25 % | 50 % | 0 % | 6 % | 48478793 |
| 77 | NC_005878 | AATT | 3 | 118397 | 118408 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 48478793 |
| 78 | NC_005878 | TTAT | 3 | 121532 | 121543 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 48478793 |
| 79 | NC_005878 | ATTC | 3 | 123660 | 123670 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 48478793 |
| 80 | NC_005878 | TTTC | 3 | 127326 | 127336 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 48478793 |
| 81 | NC_005878 | GAAA | 3 | 130373 | 130383 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 48478793 |
| 82 | NC_005878 | AGAA | 3 | 132520 | 132531 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | Non-Coding |
| 83 | NC_005878 | ACTT | 3 | 134822 | 134832 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 84 | NC_005878 | CTTT | 4 | 138393 | 138407 | 15 | 0 % | 75 % | 0 % | 25 % | 6 % | Non-Coding |