All Imperfect Repeats of Cyanidioschyzon merolae strain 10D chloroplast
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | NC_004799 | ATT | 4 | 1245 | 1255 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 30468048 |
2 | NC_004799 | GAT | 4 | 2909 | 2920 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 30468051 |
3 | NC_004799 | TGCA | 3 | 3830 | 3841 | 12 | 25 % | 25 % | 25 % | 25 % | 0 % | 30468052 |
4 | NC_004799 | CAAAA | 3 | 3936 | 3949 | 14 | 80 % | 0 % | 0 % | 20 % | 7 % | 30468053 |
5 | NC_004799 | ATG | 4 | 4119 | 4130 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 30468053 |
6 | NC_004799 | GAAAA | 3 | 6375 | 6390 | 16 | 80 % | 0 % | 20 % | 0 % | 6 % | 30468055 |
7 | NC_004799 | TATAAC | 3 | 7277 | 7295 | 19 | 50 % | 33.33 % | 0 % | 16.67 % | 10 % | Non-Coding |
8 | NC_004799 | TATTCT | 5 | 7389 | 7420 | 32 | 16.67 % | 66.67 % | 0 % | 16.67 % | 9 % | Non-Coding |
9 | NC_004799 | GCA | 5 | 7675 | 7689 | 15 | 33.33 % | 0 % | 33.33 % | 33.33 % | 6 % | 30468058 |
10 | NC_004799 | A | 13 | 9404 | 9416 | 13 | 100 % | 0 % | 0 % | 0 % | 0 % | 30468059 |
11 | NC_004799 | TCCC | 3 | 10529 | 10540 | 12 | 0 % | 25 % | 0 % | 75 % | 8 % | 30468061 |
12 | NC_004799 | TGATT | 3 | 11595 | 11608 | 14 | 20 % | 60 % | 20 % | 0 % | 7 % | 30468062 |
13 | NC_004799 | TAA | 4 | 12278 | 12289 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 30468063 |
14 | NC_004799 | TAAA | 3 | 12380 | 12392 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 30468063 |
15 | NC_004799 | AAC | 4 | 13509 | 13520 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | Non-Coding |
16 | NC_004799 | TTC | 4 | 14036 | 14047 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 30468065 |
17 | NC_004799 | TAAG | 3 | 15021 | 15032 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 30468066 |
18 | NC_004799 | AGAA | 3 | 16765 | 16775 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
19 | NC_004799 | ATGA | 3 | 17018 | 17029 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 30468068 |
20 | NC_004799 | CAGT | 3 | 20279 | 20290 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | Non-Coding |
21 | NC_004799 | TG | 6 | 22002 | 22012 | 11 | 0 % | 50 % | 50 % | 0 % | 9 % | Non-Coding |
22 | NC_004799 | TACC | 3 | 23536 | 23546 | 11 | 25 % | 25 % | 0 % | 50 % | 9 % | 30468072 |
23 | NC_004799 | TCT | 4 | 24359 | 24370 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 0 % | 30468073 |
24 | NC_004799 | CCAT | 3 | 26295 | 26305 | 11 | 25 % | 25 % | 0 % | 50 % | 9 % | 30468077 |
25 | NC_004799 | CAA | 4 | 27359 | 27370 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | 30468078 |
26 | NC_004799 | TGAT | 3 | 28088 | 28100 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 30468079 |
27 | NC_004799 | AAG | 4 | 30204 | 30215 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 30468083 |
28 | NC_004799 | ATTA | 3 | 31046 | 31057 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 30468084 |
29 | NC_004799 | TTC | 4 | 32113 | 32124 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 30468087 |
30 | NC_004799 | ATT | 4 | 32297 | 32308 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 30468087 |
31 | NC_004799 | TGC | 4 | 34563 | 34574 | 12 | 0 % | 33.33 % | 33.33 % | 33.33 % | 8 % | 30468092 |
32 | NC_004799 | GTATG | 3 | 36123 | 36136 | 14 | 20 % | 40 % | 40 % | 0 % | 7 % | 30468094 |
33 | NC_004799 | CTG | 4 | 43684 | 43695 | 12 | 0 % | 33.33 % | 33.33 % | 33.33 % | 8 % | 30468099 |
34 | NC_004799 | GGTA | 3 | 44764 | 44775 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | Non-Coding |
35 | NC_004799 | TGG | 4 | 45034 | 45044 | 11 | 0 % | 33.33 % | 66.67 % | 0 % | 9 % | 30468103 |
36 | NC_004799 | ACT | 4 | 45389 | 45400 | 12 | 33.33 % | 33.33 % | 0 % | 33.33 % | 8 % | 30468105 |
37 | NC_004799 | AAG | 4 | 46445 | 46456 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 30468107 |
38 | NC_004799 | AGA | 5 | 46643 | 46658 | 16 | 66.67 % | 0 % | 33.33 % | 0 % | 6 % | 30468107 |
39 | NC_004799 | AGAA | 4 | 47049 | 47064 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | 30468107 |
40 | NC_004799 | GAA | 4 | 48096 | 48108 | 13 | 66.67 % | 0 % | 33.33 % | 0 % | 7 % | Non-Coding |
41 | NC_004799 | AGA | 4 | 48195 | 48207 | 13 | 66.67 % | 0 % | 33.33 % | 0 % | 7 % | Non-Coding |
42 | NC_004799 | AG | 6 | 49103 | 49113 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | Non-Coding |
43 | NC_004799 | AAAT | 3 | 49490 | 49500 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 30468110 |
44 | NC_004799 | GAATGA | 3 | 49764 | 49781 | 18 | 50 % | 16.67 % | 33.33 % | 0 % | 5 % | 30468110 |
45 | NC_004799 | AGA | 4 | 49864 | 49876 | 13 | 66.67 % | 0 % | 33.33 % | 0 % | 7 % | 30468111 |
46 | NC_004799 | GA | 6 | 49956 | 49967 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 30468111 |
47 | NC_004799 | TAGA | 3 | 50269 | 50279 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 30468111 |
48 | NC_004799 | AAG | 4 | 50523 | 50534 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 30468111 |
49 | NC_004799 | AGT | 4 | 51568 | 51580 | 13 | 33.33 % | 33.33 % | 33.33 % | 0 % | 7 % | Non-Coding |
50 | NC_004799 | ATGA | 4 | 51614 | 51634 | 21 | 50 % | 25 % | 25 % | 0 % | 4 % | Non-Coding |
51 | NC_004799 | GAA | 4 | 51633 | 51643 | 11 | 66.67 % | 0 % | 33.33 % | 0 % | 9 % | Non-Coding |
52 | NC_004799 | TTA | 4 | 52777 | 52788 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 30468115 |
53 | NC_004799 | TGG | 4 | 54163 | 54174 | 12 | 0 % | 33.33 % | 66.67 % | 0 % | 8 % | 92087139 |
54 | NC_004799 | AGA | 4 | 55878 | 55889 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | Non-Coding |
55 | NC_004799 | ACC | 4 | 56266 | 56277 | 12 | 33.33 % | 0 % | 0 % | 66.67 % | 8 % | 30468120 |
56 | NC_004799 | TTG | 4 | 56494 | 56506 | 13 | 0 % | 66.67 % | 33.33 % | 0 % | 7 % | 30468120 |
57 | NC_004799 | AAC | 4 | 56686 | 56697 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | 30468120 |
58 | NC_004799 | TTGC | 3 | 58124 | 58134 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | Non-Coding |
59 | NC_004799 | CTTA | 3 | 58355 | 58365 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 30468122 |
60 | NC_004799 | CTT | 4 | 61710 | 61721 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | Non-Coding |
61 | NC_004799 | TTTCA | 3 | 61738 | 61751 | 14 | 20 % | 60 % | 0 % | 20 % | 7 % | Non-Coding |
62 | NC_004799 | TC | 7 | 63215 | 63227 | 13 | 0 % | 50 % | 0 % | 50 % | 7 % | 30468129 |
63 | NC_004799 | ATG | 5 | 63624 | 63638 | 15 | 33.33 % | 33.33 % | 33.33 % | 0 % | 6 % | 30468129 |
64 | NC_004799 | TCAA | 3 | 64350 | 64361 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 30468130 |
65 | NC_004799 | TCC | 4 | 67084 | 67095 | 12 | 0 % | 33.33 % | 0 % | 66.67 % | 8 % | Non-Coding |
66 | NC_004799 | TTG | 4 | 67508 | 67519 | 12 | 0 % | 66.67 % | 33.33 % | 0 % | 8 % | 30468134 |
67 | NC_004799 | GCA | 4 | 68877 | 68888 | 12 | 33.33 % | 0 % | 33.33 % | 33.33 % | 8 % | 30468134 |
68 | NC_004799 | CATAT | 3 | 69801 | 69815 | 15 | 40 % | 40 % | 0 % | 20 % | 6 % | Non-Coding |
69 | NC_004799 | TTTC | 3 | 70714 | 70724 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 30468137 |
70 | NC_004799 | ATC | 4 | 71329 | 71339 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 30468137 |
71 | NC_004799 | CAT | 4 | 72438 | 72448 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 30468138 |
72 | NC_004799 | ATG | 4 | 72881 | 72892 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 30468139 |
73 | NC_004799 | TGAT | 3 | 72945 | 72955 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 30468139 |
74 | NC_004799 | GAG | 4 | 73924 | 73935 | 12 | 33.33 % | 0 % | 66.67 % | 0 % | 8 % | 30468139 |
75 | NC_004799 | TGTT | 3 | 75127 | 75137 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | 30468140 |
76 | NC_004799 | CATA | 3 | 75830 | 75842 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 30468141 |
77 | NC_004799 | GGTT | 3 | 76255 | 76265 | 11 | 0 % | 50 % | 50 % | 0 % | 9 % | 30468142 |
78 | NC_004799 | ACA | 4 | 76605 | 76616 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | 30468142 |
79 | NC_004799 | AGT | 4 | 76788 | 76799 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 30468142 |
80 | NC_004799 | TGA | 4 | 77359 | 77370 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 30468144 |
81 | NC_004799 | TATG | 3 | 77974 | 77986 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 30468145 |
82 | NC_004799 | TCT | 4 | 80581 | 80592 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | Non-Coding |
83 | NC_004799 | TTA | 4 | 82837 | 82848 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 30468151 |
84 | NC_004799 | CAT | 4 | 89415 | 89425 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 30468158 |
85 | NC_004799 | GCA | 4 | 90056 | 90066 | 11 | 33.33 % | 0 % | 33.33 % | 33.33 % | 9 % | 30468158 |
86 | NC_004799 | GAAAA | 3 | 90878 | 90892 | 15 | 80 % | 0 % | 20 % | 0 % | 0 % | 30468159 |
87 | NC_004799 | AAGG | 3 | 91413 | 91423 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 30468160 |
88 | NC_004799 | ATG | 4 | 93116 | 93127 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 30468165 |
89 | NC_004799 | ATA | 4 | 93445 | 93456 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | Non-Coding |
90 | NC_004799 | AATG | 3 | 94353 | 94364 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 30468168 |
91 | NC_004799 | TTTG | 3 | 94423 | 94434 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | 30468168 |
92 | NC_004799 | TGA | 4 | 95423 | 95434 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 30468171 |
93 | NC_004799 | CTTT | 3 | 99295 | 99305 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 30468175 |
94 | NC_004799 | AAAC | 3 | 99487 | 99499 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 30468175 |
95 | NC_004799 | ACA | 4 | 100533 | 100543 | 11 | 66.67 % | 0 % | 0 % | 33.33 % | 9 % | 30468176 |
96 | NC_004799 | ACAG | 3 | 100589 | 100599 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 30468176 |
97 | NC_004799 | TGTA | 3 | 101333 | 101344 | 12 | 25 % | 50 % | 25 % | 0 % | 0 % | 30468176 |
98 | NC_004799 | GAA | 4 | 101393 | 101403 | 11 | 66.67 % | 0 % | 33.33 % | 0 % | 9 % | 30468176 |
99 | NC_004799 | AAG | 5 | 101568 | 101581 | 14 | 66.67 % | 0 % | 33.33 % | 0 % | 7 % | 30468176 |
100 | NC_004799 | CAATG | 3 | 102706 | 102720 | 15 | 40 % | 20 % | 20 % | 20 % | 0 % | 30468177 |
101 | NC_004799 | AT | 9 | 104320 | 104336 | 17 | 50 % | 50 % | 0 % | 0 % | 5 % | Non-Coding |
102 | NC_004799 | GTG | 4 | 107373 | 107384 | 12 | 0 % | 33.33 % | 66.67 % | 0 % | 8 % | 30468183 |
103 | NC_004799 | GTAG | 3 | 107988 | 108000 | 13 | 25 % | 25 % | 50 % | 0 % | 7 % | 30468185 |
104 | NC_004799 | TGG | 4 | 108562 | 108573 | 12 | 0 % | 33.33 % | 66.67 % | 0 % | 8 % | 30468185 |
105 | NC_004799 | TTTA | 3 | 112132 | 112143 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 126165894 |
106 | NC_004799 | GTA | 4 | 113061 | 113073 | 13 | 33.33 % | 33.33 % | 33.33 % | 0 % | 7 % | 30468198 |
107 | NC_004799 | AAGG | 3 | 113620 | 113630 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 30468199 |
108 | NC_004799 | GAAT | 3 | 114755 | 114766 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 30468201 |
109 | NC_004799 | AAAC | 3 | 116015 | 116026 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 30468203 |
110 | NC_004799 | TAA | 4 | 116618 | 116629 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 30468205 |
111 | NC_004799 | AATC | 3 | 117622 | 117632 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 126165893 |
112 | NC_004799 | GCA | 4 | 119424 | 119435 | 12 | 33.33 % | 0 % | 33.33 % | 33.33 % | 8 % | 30468210 |
113 | NC_004799 | AAGC | 3 | 119500 | 119511 | 12 | 50 % | 0 % | 25 % | 25 % | 8 % | 30468210 |
114 | NC_004799 | T | 12 | 119521 | 119532 | 12 | 0 % | 100 % | 0 % | 0 % | 8 % | Non-Coding |
115 | NC_004799 | CATCA | 3 | 120363 | 120376 | 14 | 40 % | 20 % | 0 % | 40 % | 7 % | 30468212 |
116 | NC_004799 | CTT | 4 | 120549 | 120560 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 30468213 |
117 | NC_004799 | CTT | 4 | 123984 | 123995 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 30468217 |
118 | NC_004799 | TTAA | 3 | 124277 | 124289 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 30468218 |
119 | NC_004799 | TC | 6 | 127916 | 127926 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 30468226 |
120 | NC_004799 | TGG | 4 | 129505 | 129516 | 12 | 0 % | 33.33 % | 66.67 % | 0 % | 8 % | 30468229 |
121 | NC_004799 | TTAT | 3 | 135702 | 135712 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 30468230 |
122 | NC_004799 | CATT | 3 | 136589 | 136601 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | 30468231 |
123 | NC_004799 | CAAA | 3 | 138508 | 138519 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | Non-Coding |
124 | NC_004799 | AAC | 5 | 139156 | 139170 | 15 | 66.67 % | 0 % | 0 % | 33.33 % | 6 % | 30468235 |
125 | NC_004799 | CAAAT | 3 | 139475 | 139488 | 14 | 60 % | 20 % | 0 % | 20 % | 7 % | 30468236 |
126 | NC_004799 | AAGA | 3 | 139980 | 139990 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 30468237 |
127 | NC_004799 | ATG | 4 | 140343 | 140353 | 11 | 33.33 % | 33.33 % | 33.33 % | 0 % | 9 % | 30468238 |
128 | NC_004799 | TAAAA | 3 | 144294 | 144308 | 15 | 80 % | 20 % | 0 % | 0 % | 0 % | 30468247 |
129 | NC_004799 | CTTT | 3 | 144341 | 144351 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
130 | NC_004799 | CAA | 4 | 145517 | 145528 | 12 | 66.67 % | 0 % | 0 % | 33.33 % | 8 % | 30468249 |
131 | NC_004799 | AAAG | 3 | 146800 | 146810 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 30468251 |