Tetra-nucleotide Imperfect Repeats of Lotus japonicus chloroplast
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_002694 | CATT | 3 | 2811 | 2822 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 13518419 |
| 2 | NC_002694 | TCTA | 3 | 3786 | 3796 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 3 | NC_002694 | GATG | 3 | 4388 | 4400 | 13 | 25 % | 25 % | 50 % | 0 % | 7 % | Non-Coding |
| 4 | NC_002694 | TAAA | 3 | 4494 | 4506 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | Non-Coding |
| 5 | NC_002694 | TGTA | 3 | 5067 | 5077 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
| 6 | NC_002694 | ATTG | 3 | 9746 | 9758 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 7 | NC_002694 | TAAT | 4 | 10106 | 10121 | 16 | 50 % | 50 % | 0 % | 0 % | 6 % | Non-Coding |
| 8 | NC_002694 | AAAT | 3 | 11922 | 11933 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 13518425 |
| 9 | NC_002694 | TATT | 3 | 12543 | 12553 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 10 | NC_002694 | AAAT | 5 | 12583 | 12602 | 20 | 75 % | 25 % | 0 % | 0 % | 10 % | Non-Coding |
| 11 | NC_002694 | AAAT | 3 | 14691 | 14702 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 12 | NC_002694 | AATT | 3 | 15788 | 15799 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 13518426 |
| 13 | NC_002694 | GAAA | 4 | 16589 | 16603 | 15 | 75 % | 0 % | 25 % | 0 % | 6 % | 157011997 |
| 14 | NC_002694 | AATT | 3 | 16641 | 16652 | 12 | 50 % | 50 % | 0 % | 0 % | 0 % | 157011997 |
| 15 | NC_002694 | TTGG | 3 | 19498 | 19509 | 12 | 0 % | 50 % | 50 % | 0 % | 8 % | 13518428 |
| 16 | NC_002694 | TCTT | 3 | 21020 | 21031 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 13518428 |
| 17 | NC_002694 | AAGC | 3 | 26575 | 26585 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 13518432 |
| 18 | NC_002694 | AATT | 3 | 31365 | 31376 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 19 | NC_002694 | ATGA | 3 | 34328 | 34338 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | Non-Coding |
| 20 | NC_002694 | TTTC | 3 | 34992 | 35004 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 13518436 |
| 21 | NC_002694 | ATTC | 3 | 38510 | 38520 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 13518437 |
| 22 | NC_002694 | AATT | 3 | 43447 | 43458 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 13518438 |
| 23 | NC_002694 | ACTT | 3 | 45943 | 45953 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 13518440 |
| 24 | NC_002694 | AATT | 3 | 49061 | 49073 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 13518442 |
| 25 | NC_002694 | AAAT | 4 | 51878 | 51893 | 16 | 75 % | 25 % | 0 % | 0 % | 6 % | Non-Coding |
| 26 | NC_002694 | ATAA | 3 | 52296 | 52307 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 27 | NC_002694 | TGTT | 3 | 53650 | 53661 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | Non-Coding |
| 28 | NC_002694 | AAAG | 3 | 53839 | 53849 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 13518445 |
| 29 | NC_002694 | ATTT | 3 | 54234 | 54245 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 30 | NC_002694 | AATA | 3 | 55692 | 55704 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 13518446 |
| 31 | NC_002694 | TCTT | 3 | 56254 | 56265 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 32 | NC_002694 | ATTT | 3 | 56657 | 56668 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 33 | NC_002694 | AATA | 3 | 58441 | 58452 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | Non-Coding |
| 34 | NC_002694 | TTTG | 3 | 59091 | 59102 | 12 | 0 % | 75 % | 25 % | 0 % | 8 % | 13518449 |
| 35 | NC_002694 | ATTT | 3 | 59543 | 59554 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 36 | NC_002694 | TTTA | 3 | 64067 | 64078 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 37 | NC_002694 | AACA | 3 | 65441 | 65452 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | Non-Coding |
| 38 | NC_002694 | AAGA | 3 | 65931 | 65941 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 39 | NC_002694 | TTTC | 3 | 65961 | 65971 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 40 | NC_002694 | TTCG | 3 | 71572 | 71583 | 12 | 0 % | 50 % | 25 % | 25 % | 8 % | 13518462 |
| 41 | NC_002694 | AATA | 3 | 72145 | 72155 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 13518462 |
| 42 | NC_002694 | CGTT | 3 | 74831 | 74843 | 13 | 0 % | 50 % | 25 % | 25 % | 7 % | 13518462 |
| 43 | NC_002694 | CAAT | 3 | 80756 | 80766 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 13518462 |
| 44 | NC_002694 | GAAA | 3 | 81529 | 81540 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 13518462 |
| 45 | NC_002694 | ATTT | 3 | 81550 | 81560 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 13518462 |
| 46 | NC_002694 | GAAA | 3 | 84068 | 84080 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 13518462 |
| 47 | NC_002694 | AAAG | 3 | 84849 | 84860 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 13518462 |
| 48 | NC_002694 | GAAA | 3 | 86031 | 86043 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | 13518462 |
| 49 | NC_002694 | ATCG | 3 | 86662 | 86674 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 13518462 |
| 50 | NC_002694 | CTTT | 3 | 87024 | 87035 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 13518462 |
| 51 | NC_002694 | CTTT | 3 | 87094 | 87104 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 13518462 |
| 52 | NC_002694 | TGAT | 3 | 88955 | 88967 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | 13518462 |
| 53 | NC_002694 | AATA | 3 | 89832 | 89844 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 13518462 |
| 54 | NC_002694 | ACTT | 3 | 91013 | 91023 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 13518462 |
| 55 | NC_002694 | AGAT | 3 | 94290 | 94300 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 13518462 |
| 56 | NC_002694 | TAAA | 3 | 96704 | 96714 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 13518462 |
| 57 | NC_002694 | AAGG | 3 | 100635 | 100645 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 13518462 |
| 58 | NC_002694 | GAGG | 3 | 103369 | 103380 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 13518462 |
| 59 | NC_002694 | AGGT | 3 | 103582 | 103593 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 13518462 |
| 60 | NC_002694 | TAAG | 3 | 104702 | 104712 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 13518462 |
| 61 | NC_002694 | AAGG | 3 | 105575 | 105587 | 13 | 50 % | 0 % | 50 % | 0 % | 7 % | 13518462 |
| 62 | NC_002694 | TGAA | 3 | 107911 | 107923 | 13 | 50 % | 25 % | 25 % | 0 % | 7 % | 13518462 |
| 63 | NC_002694 | TATT | 5 | 110443 | 110461 | 19 | 25 % | 75 % | 0 % | 0 % | 10 % | 13518462 |
| 64 | NC_002694 | AAAC | 3 | 111016 | 111027 | 12 | 75 % | 0 % | 0 % | 25 % | 8 % | 13518462 |
| 65 | NC_002694 | ATGA | 3 | 113901 | 113912 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 13518462 |
| 66 | NC_002694 | GTAA | 3 | 115005 | 115016 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 13518462 |
| 67 | NC_002694 | AAAG | 3 | 119781 | 119792 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 13518462 |
| 68 | NC_002694 | ATTT | 3 | 119879 | 119890 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 13518462 |
| 69 | NC_002694 | ATAA | 3 | 120129 | 120139 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 13518462 |
| 70 | NC_002694 | ATAA | 3 | 121862 | 121873 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 13518462 |
| 71 | NC_002694 | TCTT | 3 | 123276 | 123286 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 13518462 |
| 72 | NC_002694 | TAAA | 3 | 125146 | 125157 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 13518462 |
| 73 | NC_002694 | TAAA | 3 | 125174 | 125186 | 13 | 75 % | 25 % | 0 % | 0 % | 7 % | 13518462 |
| 74 | NC_002694 | ATTG | 3 | 125393 | 125404 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 13518462 |
| 75 | NC_002694 | CTTA | 3 | 127744 | 127754 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 13518462 |
| 76 | NC_002694 | CCTT | 3 | 131811 | 131821 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 13518462 |
| 77 | NC_002694 | GATA | 3 | 140714 | 140725 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 78 | NC_002694 | AAGT | 3 | 141433 | 141443 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 13518498 |
| 79 | NC_002694 | ATCA | 3 | 143531 | 143543 | 13 | 50 % | 25 % | 0 % | 25 % | 7 % | 13518498 |
| 80 | NC_002694 | AAAG | 3 | 145352 | 145362 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 13518498 |
| 81 | NC_002694 | CGAT | 3 | 145782 | 145794 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 13518498 |
| 82 | NC_002694 | ATTG | 3 | 146166 | 146177 | 12 | 25 % | 50 % | 25 % | 0 % | 8 % | 13518498 |
| 83 | NC_002694 | TCTT | 3 | 147595 | 147606 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 13518498 |