All Imperfect Repeats of Pinus thunbergii chloroplast
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | NC_001631 | T | 17 | 1289 | 1305 | 17 | 0 % | 100 % | 0 % | 0 % | 0 % | Non-Coding |
2 | NC_001631 | GATG | 3 | 1540 | 1552 | 13 | 25 % | 25 % | 50 % | 0 % | 7 % | Non-Coding |
3 | NC_001631 | ATC | 4 | 2067 | 2077 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 7524595 |
4 | NC_001631 | AGA | 4 | 2279 | 2290 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 7524595 |
5 | NC_001631 | TCTA | 3 | 3382 | 3392 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
6 | NC_001631 | ATGA | 3 | 4280 | 4291 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
7 | NC_001631 | AAT | 4 | 4576 | 4587 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 7524596 |
8 | NC_001631 | CCTT | 3 | 6146 | 6156 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 7524597 |
9 | NC_001631 | CTA | 4 | 6219 | 6229 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 7524597 |
10 | NC_001631 | ATGT | 3 | 6896 | 6906 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
11 | NC_001631 | TTCGA | 3 | 6959 | 6972 | 14 | 20 % | 40 % | 20 % | 20 % | 7 % | Non-Coding |
12 | NC_001631 | CTTT | 3 | 7219 | 7229 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
13 | NC_001631 | GA | 6 | 7894 | 7905 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | Non-Coding |
14 | NC_001631 | A | 12 | 9434 | 9445 | 12 | 100 % | 0 % | 0 % | 0 % | 8 % | 7524605 |
15 | NC_001631 | TTTA | 3 | 10178 | 10188 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 7524606 |
16 | NC_001631 | TGT | 4 | 12321 | 12332 | 12 | 0 % | 66.67 % | 33.33 % | 0 % | 8 % | 7524607 |
17 | NC_001631 | ATTT | 3 | 12874 | 12886 | 13 | 25 % | 75 % | 0 % | 0 % | 7 % | 7524607 |
18 | NC_001631 | AAGGA | 3 | 12941 | 12955 | 15 | 60 % | 0 % | 40 % | 0 % | 6 % | 7524607 |
19 | NC_001631 | AAAT | 3 | 15137 | 15148 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 7524611 |
20 | NC_001631 | TTTTA | 3 | 15223 | 15236 | 14 | 20 % | 80 % | 0 % | 0 % | 7 % | 7524611 |
21 | NC_001631 | TA | 6 | 19034 | 19045 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 7524613 |
22 | NC_001631 | CAT | 4 | 20259 | 20269 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 7524614 |
23 | NC_001631 | TCT | 4 | 21268 | 21278 | 11 | 0 % | 66.67 % | 0 % | 33.33 % | 9 % | 7524614 |
24 | NC_001631 | CTT | 4 | 21833 | 21843 | 11 | 0 % | 66.67 % | 0 % | 33.33 % | 9 % | 7524614 |
25 | NC_001631 | TGCTT | 3 | 21906 | 21919 | 14 | 0 % | 60 % | 20 % | 20 % | 7 % | 7524614 |
26 | NC_001631 | GTT | 4 | 22684 | 22695 | 12 | 0 % | 66.67 % | 33.33 % | 0 % | 8 % | 7524614 |
27 | NC_001631 | A | 14 | 26106 | 26119 | 14 | 100 % | 0 % | 0 % | 0 % | 0 % | Non-Coding |
28 | NC_001631 | ATGA | 3 | 26172 | 26183 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
29 | NC_001631 | ATCC | 3 | 26418 | 26428 | 11 | 25 % | 25 % | 0 % | 50 % | 9 % | Non-Coding |
30 | NC_001631 | CTT | 5 | 27582 | 27595 | 14 | 0 % | 66.67 % | 0 % | 33.33 % | 7 % | 7524621 |
31 | NC_001631 | A | 12 | 30277 | 30288 | 12 | 100 % | 0 % | 0 % | 0 % | 0 % | 7524626 |
32 | NC_001631 | AATTC | 3 | 31690 | 31704 | 15 | 40 % | 40 % | 0 % | 20 % | 6 % | 7524627 |
33 | NC_001631 | GTT | 4 | 31896 | 31906 | 11 | 0 % | 66.67 % | 33.33 % | 0 % | 9 % | 7524627 |
34 | NC_001631 | GAAAGA | 3 | 32773 | 32790 | 18 | 66.67 % | 0 % | 33.33 % | 0 % | 5 % | 7524627 |
35 | NC_001631 | AT | 7 | 32989 | 33001 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 7524627 |
36 | NC_001631 | TAGA | 3 | 33074 | 33084 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 7524627 |
37 | NC_001631 | AGA | 4 | 36208 | 36218 | 11 | 66.67 % | 0 % | 33.33 % | 0 % | 9 % | 7524627 |
38 | NC_001631 | T | 13 | 36567 | 36579 | 13 | 0 % | 100 % | 0 % | 0 % | 7 % | 7524627 |
39 | NC_001631 | TAA | 4 | 37166 | 37177 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 7524627 |
40 | NC_001631 | TCT | 4 | 39207 | 39218 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 7524627 |
41 | NC_001631 | TGTATA | 4 | 40596 | 40619 | 24 | 33.33 % | 50 % | 16.67 % | 0 % | 8 % | 7524627 |
42 | NC_001631 | AT | 7 | 40639 | 40651 | 13 | 50 % | 50 % | 0 % | 0 % | 7 % | 7524627 |
43 | NC_001631 | TTTA | 3 | 41453 | 41464 | 12 | 25 % | 75 % | 0 % | 0 % | 0 % | 7524627 |
44 | NC_001631 | AAT | 4 | 41660 | 41670 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 7524627 |
45 | NC_001631 | AT | 6 | 42877 | 42888 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 7524627 |
46 | NC_001631 | GATA | 3 | 42908 | 42919 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | 7524627 |
47 | NC_001631 | ATTT | 3 | 45032 | 45042 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 7524627 |
48 | NC_001631 | T | 18 | 45071 | 45088 | 18 | 0 % | 100 % | 0 % | 0 % | 5 % | 7524627 |
49 | NC_001631 | GGA | 4 | 45738 | 45749 | 12 | 33.33 % | 0 % | 66.67 % | 0 % | 8 % | 7524627 |
50 | NC_001631 | TATTTT | 3 | 48248 | 48265 | 18 | 16.67 % | 83.33 % | 0 % | 0 % | 5 % | 7524627 |
51 | NC_001631 | GAAA | 3 | 48878 | 48889 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 7524627 |
52 | NC_001631 | ATA | 4 | 49223 | 49233 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 7524627 |
53 | NC_001631 | GAAA | 3 | 49691 | 49701 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 7524627 |
54 | NC_001631 | TCATAT | 3 | 50077 | 50094 | 18 | 33.33 % | 50 % | 0 % | 16.67 % | 5 % | 7524627 |
55 | NC_001631 | TC | 6 | 50851 | 50861 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 7524627 |
56 | NC_001631 | AG | 6 | 50868 | 50878 | 11 | 50 % | 0 % | 50 % | 0 % | 9 % | 7524627 |
57 | NC_001631 | GAAG | 3 | 50913 | 50924 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 7524627 |
58 | NC_001631 | TCTA | 3 | 51050 | 51061 | 12 | 25 % | 50 % | 0 % | 25 % | 0 % | 7524627 |
59 | NC_001631 | TC | 6 | 51823 | 51834 | 12 | 0 % | 50 % | 0 % | 50 % | 8 % | 7524627 |
60 | NC_001631 | GATCC | 3 | 52559 | 52572 | 14 | 20 % | 20 % | 20 % | 40 % | 7 % | 7524627 |
61 | NC_001631 | ATTC | 3 | 52844 | 52855 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 7524627 |
62 | NC_001631 | AAT | 4 | 56982 | 56992 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 7524627 |
63 | NC_001631 | AATTC | 3 | 58931 | 58944 | 14 | 40 % | 40 % | 0 % | 20 % | 7 % | 7524627 |
64 | NC_001631 | TA | 6 | 59664 | 59674 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 7524627 |
65 | NC_001631 | TCGT | 3 | 61292 | 61302 | 11 | 0 % | 50 % | 25 % | 25 % | 9 % | 7524627 |
66 | NC_001631 | ATA | 4 | 62432 | 62443 | 12 | 66.67 % | 33.33 % | 0 % | 0 % | 8 % | 7524627 |
67 | NC_001631 | CT | 6 | 62611 | 62621 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 7524627 |
68 | NC_001631 | CTT | 5 | 63664 | 63677 | 14 | 0 % | 66.67 % | 0 % | 33.33 % | 7 % | 7524627 |
69 | NC_001631 | T | 12 | 63771 | 63782 | 12 | 0 % | 100 % | 0 % | 0 % | 8 % | 7524627 |
70 | NC_001631 | TC | 7 | 64526 | 64538 | 13 | 0 % | 50 % | 0 % | 50 % | 7 % | 7524627 |
71 | NC_001631 | TAT | 4 | 64705 | 64715 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 7524627 |
72 | NC_001631 | AATT | 3 | 64880 | 64890 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 7524627 |
73 | NC_001631 | TAT | 4 | 65645 | 65655 | 11 | 33.33 % | 66.67 % | 0 % | 0 % | 9 % | 7524627 |
74 | NC_001631 | TTC | 4 | 68065 | 68075 | 11 | 0 % | 66.67 % | 0 % | 33.33 % | 9 % | 7524627 |
75 | NC_001631 | AAAT | 3 | 68312 | 68323 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 7524627 |
76 | NC_001631 | TTCT | 4 | 69481 | 69495 | 15 | 0 % | 75 % | 0 % | 25 % | 6 % | 7524627 |
77 | NC_001631 | T | 16 | 71987 | 72002 | 16 | 0 % | 100 % | 0 % | 0 % | 0 % | 7524627 |
78 | NC_001631 | AT | 9 | 73493 | 73510 | 18 | 50 % | 50 % | 0 % | 0 % | 5 % | 7524627 |
79 | NC_001631 | TTC | 4 | 78310 | 78321 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 7524627 |
80 | NC_001631 | AGA | 4 | 78485 | 78495 | 11 | 66.67 % | 0 % | 33.33 % | 0 % | 9 % | 7524627 |
81 | NC_001631 | AT | 6 | 79175 | 79186 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | 7524627 |
82 | NC_001631 | AATT | 3 | 79259 | 79269 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 7524627 |
83 | NC_001631 | CT | 6 | 79942 | 79952 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 7524627 |
84 | NC_001631 | A | 14 | 79987 | 80000 | 14 | 100 % | 0 % | 0 % | 0 % | 7 % | 7524627 |
85 | NC_001631 | CTG | 4 | 80204 | 80215 | 12 | 0 % | 33.33 % | 33.33 % | 33.33 % | 8 % | 7524627 |
86 | NC_001631 | GAA | 4 | 80250 | 80261 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 7524627 |
87 | NC_001631 | TTTC | 3 | 81100 | 81111 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | 7524627 |
88 | NC_001631 | GATC | 3 | 82756 | 82767 | 12 | 25 % | 25 % | 25 % | 25 % | 8 % | 7524627 |
89 | NC_001631 | TC | 6 | 82966 | 82976 | 11 | 0 % | 50 % | 0 % | 50 % | 9 % | 7524627 |
90 | NC_001631 | TTC | 4 | 83080 | 83091 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 7524627 |
91 | NC_001631 | ATCC | 3 | 86521 | 86532 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 7524627 |
92 | NC_001631 | GTTG | 3 | 87184 | 87195 | 12 | 0 % | 50 % | 50 % | 0 % | 8 % | 7524627 |
93 | NC_001631 | TTA | 4 | 87305 | 87316 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 7524627 |
94 | NC_001631 | T | 14 | 87314 | 87327 | 14 | 0 % | 100 % | 0 % | 0 % | 0 % | 7524627 |
95 | NC_001631 | GAGG | 3 | 89792 | 89803 | 12 | 25 % | 0 % | 75 % | 0 % | 8 % | 7524627 |
96 | NC_001631 | AGGT | 3 | 90000 | 90011 | 12 | 25 % | 25 % | 50 % | 0 % | 0 % | 7524627 |
97 | NC_001631 | CTAT | 3 | 91395 | 91406 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 7524627 |
98 | NC_001631 | AACC | 3 | 91624 | 91636 | 13 | 50 % | 0 % | 0 % | 50 % | 7 % | 7524627 |
99 | NC_001631 | TCA | 4 | 92382 | 92392 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 7524627 |
100 | NC_001631 | TGG | 4 | 93738 | 93749 | 12 | 0 % | 33.33 % | 66.67 % | 0 % | 8 % | 7524627 |
101 | NC_001631 | AGA | 4 | 94155 | 94166 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 7524627 |
102 | NC_001631 | AATTGG | 3 | 94310 | 94328 | 19 | 33.33 % | 33.33 % | 33.33 % | 0 % | 10 % | 7524627 |
103 | NC_001631 | AT | 6 | 95358 | 95368 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 7524627 |
104 | NC_001631 | AT | 6 | 95476 | 95486 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 7524627 |
105 | NC_001631 | GAA | 4 | 99880 | 99891 | 12 | 66.67 % | 0 % | 33.33 % | 0 % | 8 % | 7524627 |
106 | NC_001631 | ATGG | 3 | 100434 | 100445 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 7524627 |
107 | NC_001631 | A | 13 | 100842 | 100854 | 13 | 100 % | 0 % | 0 % | 0 % | 7 % | 7524627 |
108 | NC_001631 | TCTGT | 3 | 100901 | 100914 | 14 | 0 % | 60 % | 20 % | 20 % | 7 % | 7524627 |
109 | NC_001631 | TTCT | 3 | 101081 | 101091 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 7524627 |
110 | NC_001631 | TTCT | 3 | 101454 | 101464 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 7524627 |
111 | NC_001631 | TCCA | 3 | 104932 | 104943 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 7524627 |
112 | NC_001631 | ATT | 4 | 106537 | 106548 | 12 | 33.33 % | 66.67 % | 0 % | 0 % | 8 % | 7524627 |
113 | NC_001631 | AGA | 4 | 106904 | 106916 | 13 | 66.67 % | 0 % | 33.33 % | 0 % | 7 % | 7524627 |
114 | NC_001631 | ATA | 4 | 107051 | 107061 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 7524627 |
115 | NC_001631 | TTCA | 3 | 107665 | 107676 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 7524627 |
116 | NC_001631 | TAA | 4 | 107765 | 107775 | 11 | 66.67 % | 33.33 % | 0 % | 0 % | 9 % | 7524627 |
117 | NC_001631 | TA | 6 | 107833 | 107843 | 11 | 50 % | 50 % | 0 % | 0 % | 9 % | 7524627 |
118 | NC_001631 | TTGA | 3 | 108164 | 108174 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 7524627 |
119 | NC_001631 | TAC | 4 | 108203 | 108213 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 7524627 |
120 | NC_001631 | TCA | 4 | 109028 | 109038 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 7524627 |
121 | NC_001631 | GTA | 4 | 109827 | 109838 | 12 | 33.33 % | 33.33 % | 33.33 % | 0 % | 8 % | 7524627 |
122 | NC_001631 | A | 12 | 110074 | 110085 | 12 | 100 % | 0 % | 0 % | 0 % | 8 % | 7524627 |
123 | NC_001631 | AAAG | 3 | 110312 | 110323 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 7524627 |
124 | NC_001631 | TCTA | 3 | 111041 | 111052 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
125 | NC_001631 | AAAG | 3 | 111142 | 111152 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
126 | NC_001631 | AT | 6 | 111894 | 111905 | 12 | 50 % | 50 % | 0 % | 0 % | 0 % | Non-Coding |
127 | NC_001631 | TGAG | 3 | 114687 | 114699 | 13 | 25 % | 25 % | 50 % | 0 % | 7 % | 7524751 |
128 | NC_001631 | TCTTCC | 6 | 115070 | 115105 | 36 | 0 % | 50 % | 0 % | 50 % | 8 % | 7524751 |
129 | NC_001631 | TCAA | 3 | 116602 | 116612 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 7524751 |
130 | NC_001631 | ATTTT | 3 | 117792 | 117806 | 15 | 20 % | 80 % | 0 % | 0 % | 6 % | 7524751 |
131 | NC_001631 | TTGA | 3 | 118518 | 118528 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | 7524751 |
132 | NC_001631 | TAC | 4 | 118557 | 118567 | 11 | 33.33 % | 33.33 % | 0 % | 33.33 % | 9 % | 7524751 |
133 | NC_001631 | TCT | 4 | 118764 | 118775 | 12 | 0 % | 66.67 % | 0 % | 33.33 % | 8 % | 7524751 |