Tetra-nucleotide Imperfect Repeats of Oryza sativa Japonica Group plastid
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | Motif | Iterations | Start | End | Tract Length | A% | T% | G% | C% | Imperfection % | Protein ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_001320 | AAGT | 3 | 781 | 791 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 11466764 |
| 2 | NC_001320 | CATT | 3 | 3699 | 3710 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | Non-Coding |
| 3 | NC_001320 | TAAA | 4 | 4152 | 4167 | 16 | 75 % | 25 % | 0 % | 0 % | 0 % | Non-Coding |
| 4 | NC_001320 | TTTA | 3 | 4466 | 4477 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | Non-Coding |
| 5 | NC_001320 | ATAA | 3 | 5328 | 5338 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 11466766 |
| 6 | NC_001320 | CTTA | 3 | 5374 | 5386 | 13 | 25 % | 50 % | 0 % | 25 % | 7 % | 11466766 |
| 7 | NC_001320 | TTCT | 3 | 8038 | 8048 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 8 | NC_001320 | TTTA | 3 | 8209 | 8219 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 9 | NC_001320 | GAAA | 3 | 10361 | 10372 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 11466771 |
| 10 | NC_001320 | CCCA | 3 | 12775 | 12786 | 12 | 25 % | 0 % | 0 % | 75 % | 8 % | Non-Coding |
| 11 | NC_001320 | TTTG | 3 | 13536 | 13546 | 11 | 0 % | 75 % | 25 % | 0 % | 9 % | Non-Coding |
| 12 | NC_001320 | CTTT | 3 | 15220 | 15231 | 12 | 0 % | 75 % | 0 % | 25 % | 0 % | Non-Coding |
| 13 | NC_001320 | GTAT | 3 | 16133 | 16143 | 11 | 25 % | 50 % | 25 % | 0 % | 9 % | Non-Coding |
| 14 | NC_001320 | TTTC | 3 | 16999 | 17009 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 15 | NC_001320 | AAAG | 3 | 17093 | 17104 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | Non-Coding |
| 16 | NC_001320 | TTTC | 3 | 19816 | 19828 | 13 | 0 % | 75 % | 0 % | 25 % | 7 % | 11466777 |
| 17 | NC_001320 | GCGA | 3 | 28857 | 28869 | 13 | 25 % | 0 % | 50 % | 25 % | 7 % | 11466779 |
| 18 | NC_001320 | TTAA | 3 | 29375 | 29386 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 19 | NC_001320 | GAAA | 3 | 29468 | 29480 | 13 | 75 % | 0 % | 25 % | 0 % | 7 % | Non-Coding |
| 20 | NC_001320 | CTTT | 3 | 32320 | 32330 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 21 | NC_001320 | AAAG | 3 | 33608 | 33618 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 11466783 |
| 22 | NC_001320 | TTTC | 3 | 35949 | 35959 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 23 | NC_001320 | AAGA | 3 | 39236 | 39247 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 11466787 |
| 24 | NC_001320 | CTAG | 3 | 40179 | 40191 | 13 | 25 % | 25 % | 25 % | 25 % | 7 % | 11466787 |
| 25 | NC_001320 | ATCA | 3 | 42192 | 42202 | 11 | 50 % | 25 % | 0 % | 25 % | 9 % | 11466788 |
| 26 | NC_001320 | AAGA | 3 | 42344 | 42354 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 11466788 |
| 27 | NC_001320 | AACA | 3 | 44666 | 44676 | 11 | 75 % | 0 % | 0 % | 25 % | 9 % | Non-Coding |
| 28 | NC_001320 | TTGA | 3 | 46591 | 46603 | 13 | 25 % | 50 % | 25 % | 0 % | 7 % | Non-Coding |
| 29 | NC_001320 | CAGA | 3 | 48164 | 48174 | 11 | 50 % | 0 % | 25 % | 25 % | 9 % | 11466790 |
| 30 | NC_001320 | TAGG | 4 | 51286 | 51301 | 16 | 25 % | 25 % | 50 % | 0 % | 6 % | Non-Coding |
| 31 | NC_001320 | AATT | 3 | 53430 | 53441 | 12 | 50 % | 50 % | 0 % | 0 % | 8 % | Non-Coding |
| 32 | NC_001320 | AATA | 4 | 55765 | 55781 | 17 | 75 % | 25 % | 0 % | 0 % | 5 % | Non-Coding |
| 33 | NC_001320 | AAAG | 3 | 56375 | 56385 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 34 | NC_001320 | TTCT | 3 | 59451 | 59462 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 35 | NC_001320 | ATTC | 3 | 59482 | 59492 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | Non-Coding |
| 36 | NC_001320 | TCTT | 3 | 60874 | 60884 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | Non-Coding |
| 37 | NC_001320 | TTCT | 3 | 63703 | 63714 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 38 | NC_001320 | GAAA | 3 | 64904 | 64914 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | Non-Coding |
| 39 | NC_001320 | TATT | 3 | 65057 | 65067 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | Non-Coding |
| 40 | NC_001320 | GAAA | 3 | 65384 | 65395 | 12 | 75 % | 0 % | 25 % | 0 % | 8 % | 11466811 |
| 41 | NC_001320 | AGAA | 3 | 68356 | 68367 | 12 | 75 % | 0 % | 25 % | 0 % | 0 % | 11466871 |
| 42 | NC_001320 | AAAG | 3 | 68497 | 68507 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 11466871 |
| 43 | NC_001320 | TTTA | 4 | 71703 | 71718 | 16 | 25 % | 75 % | 0 % | 0 % | 6 % | 11466871 |
| 44 | NC_001320 | ATTT | 3 | 75932 | 75943 | 12 | 25 % | 75 % | 0 % | 0 % | 8 % | 11466871 |
| 45 | NC_001320 | ATTT | 3 | 77213 | 77223 | 11 | 25 % | 75 % | 0 % | 0 % | 9 % | 11466871 |
| 46 | NC_001320 | AATG | 3 | 81007 | 81017 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 11466871 |
| 47 | NC_001320 | TTCT | 3 | 88384 | 88394 | 11 | 0 % | 75 % | 0 % | 25 % | 9 % | 11466871 |
| 48 | NC_001320 | AAAC | 3 | 93274 | 93286 | 13 | 75 % | 0 % | 0 % | 25 % | 7 % | 59593535 |
| 49 | NC_001320 | ATCC | 3 | 93406 | 93417 | 12 | 25 % | 25 % | 0 % | 50 % | 8 % | 59593535 |
| 50 | NC_001320 | CTAT | 3 | 93793 | 93804 | 12 | 25 % | 50 % | 0 % | 25 % | 8 % | 59593535 |
| 51 | NC_001320 | ACGG | 3 | 96662 | 96673 | 12 | 25 % | 0 % | 50 % | 25 % | 8 % | 59593535 |
| 52 | NC_001320 | AGGT | 3 | 96945 | 96956 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 59593535 |
| 53 | NC_001320 | AACG | 3 | 98267 | 98278 | 12 | 50 % | 0 % | 25 % | 25 % | 0 % | 59593535 |
| 54 | NC_001320 | AAAG | 4 | 99595 | 99610 | 16 | 75 % | 0 % | 25 % | 0 % | 6 % | 59593535 |
| 55 | NC_001320 | GAAT | 3 | 101203 | 101213 | 11 | 50 % | 25 % | 25 % | 0 % | 9 % | 59593535 |
| 56 | NC_001320 | AAGG | 3 | 101215 | 101226 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 59593535 |
| 57 | NC_001320 | AATA | 3 | 103743 | 103754 | 12 | 75 % | 25 % | 0 % | 0 % | 8 % | 59593535 |
| 58 | NC_001320 | AAAT | 3 | 108638 | 108648 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 59593535 |
| 59 | NC_001320 | TAAC | 3 | 112067 | 112078 | 12 | 50 % | 25 % | 0 % | 25 % | 8 % | 59593535 |
| 60 | NC_001320 | ATTC | 3 | 113905 | 113915 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 59593535 |
| 61 | NC_001320 | AAAT | 3 | 114320 | 114330 | 11 | 75 % | 25 % | 0 % | 0 % | 9 % | 59593535 |
| 62 | NC_001320 | CTTT | 4 | 115508 | 115523 | 16 | 0 % | 75 % | 0 % | 25 % | 6 % | 59593535 |
| 63 | NC_001320 | TCGT | 3 | 116839 | 116850 | 12 | 0 % | 50 % | 25 % | 25 % | 0 % | 59593535 |
| 64 | NC_001320 | CTTA | 3 | 117046 | 117056 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 59593535 |
| 65 | NC_001320 | CCGT | 3 | 118445 | 118456 | 12 | 0 % | 25 % | 25 % | 50 % | 8 % | 59593535 |
| 66 | NC_001320 | AGGA | 3 | 121478 | 121489 | 12 | 50 % | 0 % | 50 % | 0 % | 8 % | 59593535 |
| 67 | NC_001320 | GGAT | 3 | 121701 | 121712 | 12 | 25 % | 25 % | 50 % | 0 % | 8 % | 59593535 |
| 68 | NC_001320 | AGAA | 3 | 126724 | 126734 | 11 | 75 % | 0 % | 25 % | 0 % | 9 % | 11466861 |
| 69 | NC_001320 | TGAA | 3 | 131300 | 131311 | 12 | 50 % | 25 % | 25 % | 0 % | 8 % | Non-Coding |
| 70 | NC_001320 | CTTT | 3 | 131318 | 131329 | 12 | 0 % | 75 % | 0 % | 25 % | 8 % | Non-Coding |
| 71 | NC_001320 | CATT | 3 | 134101 | 134111 | 11 | 25 % | 50 % | 0 % | 25 % | 9 % | 11466868 |