IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: A

Select Genome:

Bacterial Genome print " Acaryochloris marina MBIC11017 plasmid pREB1"; print " Acaryochloris marina MBIC11017 plasmid pREB2"; print " Acaryochloris marina MBIC11017 plasmid pREB3"; print " Acaryochloris marina MBIC11017 plasmid pREB4"; print " Acaryochloris marina MBIC11017 plasmid pREB5"; print " Acaryochloris marina MBIC11017 plasmid pREB6"; print " Acaryochloris marina MBIC11017 plasmid pREB7"; print " Acaryochloris marina MBIC11017 plasmid pREB8"; print " Acaryochloris marina MBIC11017 plasmid pREB9"; print " Acaryochloris marina MBIC11017"; print " Acholeplasma laidlawii PG-8A"; print " Acidiphilium cryptum JF-5 plasmid pACRY01"; print " Acidiphilium cryptum JF-5 plasmid pACRY02"; print " Acidiphilium cryptum JF-5 plasmid pACRY03"; print " Acidiphilium cryptum JF-5 plasmid pACRY04"; print " Acidiphilium cryptum JF-5 plasmid pACRY05"; print " Acidiphilium cryptum JF-5 plasmid pACRY06"; print " Acidiphilium cryptum JF-5 plasmid pACRY07"; print " Acidiphilium cryptum JF-5 plasmid pACRY08"; print " Acidiphilium cryptum JF-5"; print " Acidithiobacillus ferrooxidans ATCC 23270"; print " Acidithiobacillus ferrooxidans ATCC 53993"; print " Acidobacteria bacterium Ellin345"; print " Acidobacterium capsulatum ATCC 51196"; print " Acidothermus cellulolyticus 11B"; print " Acidovorax avenae subsp. citrulli AAC00-1"; print " Acidovorax sp. JS42 plasmid pAOVO01"; print " Acidovorax sp. JS42 plasmid pAOVO02"; print " Acidovorax sp. JS42"; print " Acinetobacter baumannii AB0057 plasmid pAB0057"; print " Acinetobacter baumannii AB0057"; print " Acinetobacter baumannii AB307-0294"; print " Acinetobacter baumannii ACICU plasmid pACICU1"; print " Acinetobacter baumannii ACICU plasmid pACICU2"; print " Acinetobacter baumannii ACICU"; print " Acinetobacter baumannii ATCC 17978 plasmid pAB1"; print " Acinetobacter baumannii ATCC 17978 plasmid pAB2"; print " Acinetobacter baumannii ATCC 17978"; print " Acinetobacter baumannii AYE"; print " Acinetobacter baumannii plasmid p1ABAYE"; print " Acinetobacter baumannii plasmid p1ABSDF"; print " Acinetobacter baumannii plasmid p2ABAYE"; print " Acinetobacter baumannii plasmid p2ABSDF"; print " Acinetobacter baumannii plasmid p3ABAYE"; print " Acinetobacter baumannii plasmid p3ABSDF"; print " Acinetobacter baumannii plasmid p4ABAYE"; print " Acinetobacter baumannii"; print " Acinetobacter sp. ADP1"; print " Actinobacillus pleuropneumoniae L20"; print " Actinobacillus pleuropneumoniae serovar 3 str. JL03"; print " Actinobacillus pleuropneumoniae serovar 7 str. AP76 plasmid ABB7_B"; print " Actinobacillus pleuropneumoniae serovar 7 str. AP76 plasmid APP7_A"; print " Actinobacillus pleuropneumoniae serovar 7 str. AP76 plasmid APP7_C"; print " Actinobacillus pleuropneumoniae serovar 7 str. AP76"; print " Actinobacillus succinogenes 130Z"; print " Aeromonas hydrophila subsp. hydrophila ATCC 7966"; print " Aeromonas salmonicida salmonicida A449 plasmid pAsa1"; print " Aeromonas salmonicida salmonicida A449 plasmid pAsa2"; print " Aeromonas salmonicida salmonicida A449 plasmid pAsa3"; print " Aeromonas salmonicida subsp. salmonicida A449 plasmid pAsa4"; print " Aeromonas salmonicida subsp. salmonicida A449 plasmid pAsa5"; print " Aeromonas salmonicida subsp. salmonicida A449"; print " Aeropyrum pernix K1"; print " Agrobacterium radiobacter K84 chromosome 1"; print " Agrobacterium radiobacter K84 chromosome 2"; print " Agrobacterium radiobacter K84 plasmid pAgK84"; print " Agrobacterium radiobacter K84 plasmid pAtK84b"; print " Agrobacterium radiobacter K84 plasmid pAtK84c"; print " Agrobacterium tumefaciens str. C58 chromosome circular"; print " Agrobacterium tumefaciens str. C58 chromosome linear"; print " Agrobacterium tumefaciens str. C58 plasmid At"; print " Agrobacterium tumefaciens str. C58 plasmid Ti"; print " Agrobacterium vitis S4 chromosome 1"; print " Agrobacterium vitis S4 chromosome 2"; print " Agrobacterium vitis S4 plasmid pAtS4a"; print " Agrobacterium vitis S4 plasmid pAtS4b"; print " Agrobacterium vitis S4 plasmid pAtS4c"; print " Agrobacterium vitis S4 plasmid pAtS4e"; print " Agrobacterium vitis S4 plasmid pTiS4"; print " Akkermansia muciniphila ATCC BAA-835"; print " Alcanivorax borkumensis SK2"; print " Aliivibrio salmonicida LFI1238 chromosome 1"; print " Aliivibrio salmonicida LFI1238 chromosome 2"; print " Aliivibrio salmonicida LFI1238 plasmid pVSAL320"; print " Aliivibrio salmonicida LFI1238 plasmid pVSAL43"; print " Aliivibrio salmonicida LFI1238 plasmid pVSAL54"; print " Aliivibrio salmonicida LFI1238 plasmid pVSAL840 complete genome"; print " Alkalilimnicola ehrlichei MLHE-1"; print " Alkaliphilus metalliredigens QYMF"; print " Alkaliphilus oremlandii OhILAs"; print " Alteromonas macleodii 'Deep ecotype'"; print " Anabaena variabilis ATCC 29413 plasmid A"; print " Anabaena variabilis ATCC 29413 plasmid B"; print " Anabaena variabilis ATCC 29413 plasmid C"; print " Anabaena variabilis ATCC 29413"; print " Anaerocellum thermophilum DSM 6725 plasmid pATHE01"; print " Anaerocellum thermophilum DSM 6725 plasmid pATHE02"; print " Anaerocellum thermophilum DSM 6725"; print " Anaeromyxobacter dehalogenans 2CP-1"; print " Anaeromyxobacter dehalogenans 2CP-C"; print " Anaeromyxobacter sp. Fw109-5"; print " Anaeromyxobacter sp. K"; print " Anaplasma marginale str. Florida"; print " Anaplasma marginale str. St. Maries"; print " Anaplasma phagocytophilum HZ"; print " Anoxybacillus flavithermus WK1"; print " Aquifex aeolicus VF5 plasmid ece1"; print " Aquifex aeolicus VF5"; print " Archaeoglobus fulgidus DSM 4304"; print " Arcobacter butzleri RM4018"; print " Aromatoleum aromaticum EbN1"; print " Arthrobacter aurescens TC1 plasmid TC1"; print " Arthrobacter aurescens TC1 plasmid TC2"; print " Arthrobacter aurescens TC1"; print " Arthrobacter chlorophenolicus A6 plasmid pACHL01"; print " Arthrobacter chlorophenolicus A6 plasmid pACHL02"; print " Arthrobacter chlorophenolicus A6"; print " Arthrobacter sp. FB24 chromosome 1"; print " Arthrobacter sp. FB24 plasmid 1"; print " Arthrobacter sp. FB24 plasmid 2"; print " Arthrobacter sp. FB24 plasmid 3"; print " Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-I"; print " Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-II"; print " Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-III"; print " Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-IV"; print " Aster yellows witches'-broom phytoplasma AYWB"; print " Azoarcus sp. BH72"; print " Azoarcus sp. EbN1 plasmid 1"; print " Azoarcus sp. EbN1 plasmid 2"; print " Azorhizobium caulinodans ORS 571"; Viral Genome print " Abaca bunchy top virus segment 1"; print " Abaca bunchy top virus segment 2"; print " Abaca bunchy top virus segment 3"; print " Abaca bunchy top virus segment 4"; print " Abaca bunchy top virus segment 5"; print " Abaca bunchy top virus segment 6"; print " Abalone shriveling syndrome-associated virus"; print " Abelson murine leukemia virus"; print " Abutilon mosaic virus DNA A"; print " Abutilon mosaic virus DNA B"; print " Acanthamoeba polyphaga mimivirus"; print " Acanthocystis turfacea Chlorella virus 1"; print " Acheta domesticus densovirus"; print " Acholeplasma phage L2"; print " Acholeplasma phage MV-L1"; print " Acidianus bottle-shaped virus"; print " Acidianus filamentous virus 1"; print " Acidianus filamentous virus 2"; print " Acidianus filamentous virus 3"; print " Acidianus filamentous virus 6"; print " Acidianus filamentous virus 7"; print " Acidianus filamentous virus 8"; print " Acidianus filamentous virus 9"; print " Acidianus rod-shaped virus 1"; print " Acidianus two-tailed virus"; print " Acinetobacter phage AP205"; print " Aconitum latent virus"; print " Actinomyces phage Av-1"; print " Actinoplanes phage phiAsp2"; print " Acute bee paralysis virus"; print " Acyrthosiphon pisum bacteriophage APSE-1"; print " Acyrthosiphon pisum virus"; print " Adeno-associated virus - 2"; print " Adeno-associated virus 1"; print " Adeno-associated virus 3"; print " Adeno-associated virus 4"; print " Adeno-associated virus 5"; print " Adeno-associated virus 7"; print " Adeno-associated virus 8"; print " Adoxophyes honmai NPV"; print " Adoxophyes orana granulovirus"; print " Adoxophyes orana nucleopolyhedrovirus"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Adult diarrheal rotavirus strain J19"; print " Aedes albopictus densovirus"; print " Aedes pseudoscutellaris reovirus segment 1"; print " Aedes pseudoscutellaris reovirus segment 2"; print " Aedes pseudoscutellaris reovirus segment 3"; print " Aedes pseudoscutellaris reovirus segment 4"; print " Aedes pseudoscutellaris reovirus segment 5"; print " Aedes pseudoscutellaris reovirus segment 6"; print " Aedes pseudoscutellaris reovirus segment 7"; print " Aedes pseudoscutellaris reovirus segment 8"; print " Aedes pseudoscutellaris reovirus segment 9"; print " Aedes taeniorhynchus iridescent virus"; print " Aeromonas phage 25"; print " Aeromonas phage 31"; print " Aeromonas phage 44RR2.8t"; print " Aeromonas phage Aeh1"; print " Aeromonas phage phiO18P"; print " African cassava mosaic virus DNA A"; print " African cassava mosaic virus DNA B"; print " African green monkey polyomavirus"; print " African horsesickness virus segment 1"; print " African horsesickness virus segment 10"; print " African horsesickness virus segment 2"; print " African horsesickness virus segment 3"; print " African horsesickness virus segment 4"; print " African horsesickness virus segment 5"; print " African horsesickness virus segment 6"; print " African horsesickness virus segment 7"; print " African horsesickness virus segment 8"; print " African horsesickness virus segment 9"; print " African swine fever virus"; print " Ageratum enation virus"; print " Ageratum leaf curl disease associated sequence virion"; print " Ageratum leaf curl virus - [G52]"; print " Ageratum yellow leaf curl beta - [Pakistan:Lahore:2005]"; print " Ageratum yellow vein China virus"; print " Ageratum yellow vein China virus-associated DNA beta"; print " Ageratum yellow vein Hualian virus-[Taiwan:Hsinchu:tom:2003] DNA A"; print " Ageratum yellow vein Sri Lanka virus segment A"; print " Ageratum yellow vein Taiwan virus"; print " Ageratum yellow vein virus"; print " Ageratum yellow vein virus-associated DNA beta"; print " Ageratum yellow vein virus-associated nanovirus DNA"; print " Agropyron mosaic virus"; print " Agrotis ipsilon multiple nucleopolyhedrovirus"; print " Agrotis segetum granulovirus"; print " Agrotis segetum nucleopolyhedrovirus"; print " Aichi virus"; print " Akabane virus segment L"; print " Akabane virus segment M"; print " Akabane virus segment S"; print " Alcelaphine herpesvirus 1"; print " Aleutian mink disease parvovirus"; print " Alfalfa mosaic virus RNA 1"; print " Alfalfa mosaic virus RNA 2"; print " Alfalfa mosaic virus RNA 3"; print " Algerian watermelon mosaic virus"; print " Alkhurma virus"; print " Allamanda leaf curl virus DNA-A"; print " Allpahuayo virus segment L"; print " Allpahuayo virus segment S"; print " Alstroemeria virus x"; print " Alternanthera mosaic virus"; print " Alternanthera yellow vein virus DNA-A"; print " Alternanthera yellow vein virus satellite DNA beta"; print " Alternaria alternata dsRNA mycovirus segment L"; print " Alternaria alternata dsRNA mycovirus segment M1"; print " Alternaria alternata dsRNA mycovirus segment M2"; print " Alternaria alternata dsRNA mycovirus segment S"; print " Amapari virus segment L"; print " Amapari virus segment S"; print " Amasya cherry disease associated chrysovirus segment 1"; print " Amasya cherry disease associated chrysovirus segment 2"; print " Amasya cherry disease associated chrysovirus segment 3"; print " Amasya cherry disease associated chrysovirus segment 4"; print " Amasya cherry disease-associated mycovirus"; print " Amasya cherry disease-associated mycovirus"; print " Ambystoma tigrinum virus"; print " American grass carp reovirus segment 1"; print " American grass carp reovirus segment 10"; print " American grass carp reovirus segment 11"; print " American grass carp reovirus segment 2"; print " American grass carp reovirus segment 3"; print " American grass carp reovirus segment 4"; print " American grass carp reovirus segment 5"; print " American grass carp reovirus segment 6"; print " American grass carp reovirus segment 7"; print " American grass carp reovirus segment 8"; print " American grass carp reovirus segment 9"; print " American plum line pattern virus RNA1"; print " American plum line pattern virus RNA2"; print " American plum line pattern virus RNA3"; print " Amsacta moorei entomopoxvirus"; print " Anagyris vein yellowing virus"; print " Andes virus segment L"; print " Andes virus segment M"; print " Andes virus segment S"; print " Angelonia flower break virus"; print " Anopheles gambiae densonucleosis virus"; print " Antheraea pernyi nucleopolyhedrovirus"; print " Anticarsia gemmatalis nucleopolyhedrovirus"; print " Aphid lethal paralysis virus"; print " Apoi virus"; print " Apple chlorotic leaf spot virus"; print " Apple dimple fruit viroid"; print " Apple fruit crinkle viroid"; print " Apple latent spherical virus segment 1"; print " Apple latent spherical virus segment 2"; print " Apple mosaic virus RNA 1"; print " Apple mosaic virus RNA 2"; print " Apple mosaic virus RNA 3"; print " Apple scar skin viroid"; print " Apple stem grooving virus"; print " Apple stem pitting virus"; print " Apricot pseudo-chlorotic leaf spot virus"; print " Aquareovirus A segment 1"; print " Aquareovirus A segment 10"; print " Aquareovirus A segment 11"; print " Aquareovirus A segment 2"; print " Aquareovirus A segment 3"; print " Aquareovirus A segment 4"; print " Aquareovirus A segment 5"; print " Aquareovirus A segment 6"; print " Aquareovirus A segment 7"; print " Aquareovirus A segment 8"; print " Aquareovirus A segment 9"; print " Arabis mosaic virus RNA 1"; print " Arabis mosaic virus RNA 2"; print " Arabis mosaic virus large satellite RNA"; print " Arabis mosaic virus small satellite RNA"; print " Archaeal BJ1 virus"; print " Artichoke mottled crinkle virus"; print " Asparagus virus 2 RNA 1"; print " Asparagus virus 2 RNA 2"; print " Asparagus virus 2 RNA 3"; print " Asparagus virus 3"; print " Astrovirus MLB1"; print " Ateline herpesvirus 3"; print " Atkinsonella hypoxylon partitivirus RNA 1"; print " Atkinsonella hypoxylon partitivirus RNA 2"; print " Atkinsonella hypoxylon partitivirus RNA 3"; print " Atlantic salmon swim bladder sarcoma virus"; print " Aura virus"; print " Australian bat lyssavirus"; print " Australian grapevine viroid"; print " Autographa californica nucleopolyhedrovirus"; print " Avian adeno-associated virus ATCC VR-865"; print " Avian adeno-associated virus strain DA-1"; print " Avian carcinoma virus"; print " Avian encephalomyelitis virus"; print " Avian endogenous retrovirus EAV-HP"; print " Avian infectious bronchitis virus"; print " Avian leukosis virus - RSA"; print " Avian metapneumovirus"; print " Avian myelocytomatosis virus"; print " Avian paramyxovirus 6"; print " Avocado sunblotch viroid"; print " Azospirillum phage Cd";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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