List of
Perfect Tetra
-nucleotide repeats in Aspergillus oryzae RIB40
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001884668 | CTGG | 3 | 82307 | 82318 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 317146631 |
| 2. | NW_001884668 | TTTG | 3 | 101693 | 101704 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 3. | NW_001884668 | TCTT | 5 | 106599 | 106618 | 20 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 4. | NW_001884668 | CAAA | 3 | 151714 | 151725 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 5. | NW_001884668 | AAAC | 3 | 231636 | 231647 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 6. | NW_001884668 | AGAA | 7 | 231668 | 231695 | 28 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 7. | NW_001884668 | TCAA | 7 | 235940 | 235967 | 28 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 8. | NW_001884668 | TTAT | 3 | 253756 | 253767 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 9. | NW_001884668 | AGGG | 3 | 280316 | 280327 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 169774255 |
| 10. | NW_001884668 | GTAT | 3 | 283348 | 283359 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 11. | NW_001884668 | TTCT | 4 | 297206 | 297221 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 12. | NW_001884668 | TCTT | 3 | 301709 | 301720 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 13. | NW_001884668 | TACA | 3 | 304510 | 304521 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 14. | NW_001884668 | GGAT | 3 | 306613 | 306624 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 15. | NW_001884668 | GAAA | 3 | 331112 | 331123 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 16. | NW_001884668 | AGAT | 3 | 389385 | 389396 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 17. | NW_001884668 | CCCT | 3 | 430041 | 430052 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 18. | NW_001884668 | ATGA | 3 | 432403 | 432414 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 19. | NW_001884668 | AAAG | 4 | 445943 | 445958 | 16 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 20. | NW_001884668 | TGTT | 3 | 462369 | 462380 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 21. | NW_001884668 | AAAT | 3 | 479777 | 479788 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 22. | NW_001884668 | CAGA | 3 | 495177 | 495188 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 23. | NW_001884668 | TACC | 3 | 530078 | 530089 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 24. | NW_001884668 | TGTT | 3 | 530279 | 530290 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 25. | NW_001884668 | CCGA | 3 | 545358 | 545369 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 317146807 |
| 26. | NW_001884668 | TCAA | 3 | 556721 | 556732 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 27. | NW_001884668 | ATAA | 3 | 572515 | 572526 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 28. | NW_001884668 | TGAT | 3 | 573223 | 573234 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 29. | NW_001884668 | TACA | 3 | 573923 | 573934 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 30. | NW_001884668 | CCAG | 3 | 599876 | 599887 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 31. | NW_001884668 | GGCT | 3 | 608082 | 608093 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 32. | NW_001884668 | TCAA | 3 | 641558 | 641569 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 33. | NW_001884668 | GAAA | 3 | 651448 | 651459 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 34. | NW_001884668 | GAAA | 3 | 675376 | 675387 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 317146861 |
| 35. | NW_001884668 | GTAT | 3 | 775636 | 775647 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 36. | NW_001884668 | ATAA | 4 | 782016 | 782031 | 16 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 37. | NW_001884668 | AATA | 5 | 783567 | 783586 | 20 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 38. | NW_001884668 | CTTT | 6 | 797108 | 797131 | 24 | 0.00% | 75.00% | 0.00% | 25.00% | 317146920 |
| 39. | NW_001884668 | TTTC | 3 | 818642 | 818653 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 40. | NW_001884668 | TACA | 3 | 822814 | 822825 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 41. | NW_001884668 | AATG | 3 | 826784 | 826795 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 42. | NW_001884668 | TTGA | 3 | 830622 | 830633 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 43. | NW_001884668 | CTTC | 3 | 831539 | 831550 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 44. | NW_001884668 | CCAA | 3 | 833983 | 833994 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | 317146934 |
| 45. | NW_001884668 | TCTT | 3 | 836766 | 836777 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 46. | NW_001884668 | AACC | 3 | 853079 | 853090 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 47. | NW_001884668 | AGAA | 3 | 858035 | 858046 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 48. | NW_001884668 | AAAG | 6 | 862551 | 862574 | 24 | 75.00% | 0.00% | 25.00% | 0.00% | 317146949 |
| 49. | NW_001884668 | TTTC | 3 | 865300 | 865311 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 50. | NW_001884668 | TGAT | 5 | 882055 | 882074 | 20 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 51. | NW_001884668 | AATC | 3 | 890051 | 890062 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 52. | NW_001884668 | TTGA | 3 | 925393 | 925404 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 53. | NW_001884668 | ATAC | 3 | 937769 | 937780 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 54. | NW_001884668 | GGGA | 3 | 948696 | 948707 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 317147676 |
| 55. | NW_001884668 | GTAT | 3 | 949923 | 949934 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 317147676 |
| 56. | NW_001884668 | ATGT | 3 | 979875 | 979886 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 57. | NW_001884668 | TGTT | 3 | 979894 | 979905 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 58. | NW_001884668 | ATTG | 3 | 994405 | 994416 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 59. | NW_001884668 | GAAA | 3 | 1014332 | 1014343 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 60. | NW_001884668 | TCCC | 3 | 1025847 | 1025858 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 61. | NW_001884668 | TACC | 3 | 1043287 | 1043298 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 62. | NW_001884668 | AAAT | 3 | 1043429 | 1043440 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 63. | NW_001884668 | AGAA | 3 | 1085636 | 1085647 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 64. | NW_001884668 | AATA | 7 | 1127443 | 1127470 | 28 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 65. | NW_001884668 | GAAA | 3 | 1173693 | 1173704 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 66. | NW_001884668 | GTAT | 3 | 1180604 | 1180615 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 67. | NW_001884668 | AGAC | 3 | 1201514 | 1201525 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 68. | NW_001884668 | TTAC | 3 | 1209747 | 1209758 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 69. | NW_001884668 | CATG | 3 | 1268996 | 1269007 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 70. | NW_001884668 | CATA | 8 | 1286437 | 1286468 | 32 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 71. | NW_001884668 | TCTT | 3 | 1312265 | 1312276 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 72. | NW_001884668 | CATA | 4 | 1332999 | 1333014 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 73. | NW_001884668 | CTCC | 3 | 1335527 | 1335538 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 169774901 |
| 74. | NW_001884668 | TATT | 3 | 1342676 | 1342687 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 75. | NW_001884668 | GAAA | 3 | 1352526 | 1352537 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 76. | NW_001884668 | TTCT | 3 | 1373989 | 1374000 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 77. | NW_001884668 | ATGC | 3 | 1394307 | 1394318 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 78. | NW_001884668 | TTCT | 3 | 1407311 | 1407322 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 79. | NW_001884668 | TGTA | 3 | 1409724 | 1409735 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 80. | NW_001884668 | TGTA | 3 | 1499901 | 1499912 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 81. | NW_001884668 | ACAT | 3 | 1505071 | 1505082 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 82. | NW_001884668 | TGAC | 3 | 1505795 | 1505806 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 83. | NW_001884668 | GAAT | 3 | 1516187 | 1516198 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 84. | NW_001884668 | GACT | 4 | 1527376 | 1527391 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 85. | NW_001884668 | TCCC | 3 | 1539914 | 1539925 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 86. | NW_001884668 | ATGA | 3 | 1564604 | 1564615 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | 317147252 |
| 87. | NW_001884668 | TTCT | 3 | 1566328 | 1566339 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 88. | NW_001884668 | TCAA | 3 | 1574573 | 1574584 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 89. | NW_001884668 | TCTT | 3 | 1591698 | 1591709 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 317147704 |
| 90. | NW_001884668 | CATG | 4 | 1613831 | 1613846 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 91. | NW_001884668 | TATG | 5 | 1613847 | 1613866 | 20 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 92. | NW_001884668 | TCTA | 3 | 1626927 | 1626938 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 93. | NW_001884668 | CAAA | 3 | 1652193 | 1652204 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 94. | NW_001884668 | ATTA | 3 | 1716596 | 1716607 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 95. | NW_001884668 | TTTC | 6 | 1720574 | 1720597 | 24 | 0.00% | 75.00% | 0.00% | 25.00% | 317147316 |
| 96. | NW_001884668 | GATG | 3 | 1720647 | 1720658 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 317147316 |
| 97. | NW_001884668 | GAAA | 3 | 1726004 | 1726015 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 98. | NW_001884668 | TGAT | 3 | 1730500 | 1730511 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 99. | NW_001884668 | CTTT | 3 | 1734144 | 1734155 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 100. | NW_001884668 | ATTT | 3 | 1734555 | 1734566 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 101. | NW_001884668 | CCTT | 3 | 1747671 | 1747682 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 102. | NW_001884668 | AAGA | 3 | 1747930 | 1747941 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 103. | NW_001884668 | ATAA | 5 | 1814880 | 1814899 | 20 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 104. | NW_001884668 | GACG | 3 | 1857174 | 1857185 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 169775243 |
| 105. | NW_001884668 | AGGA | 3 | 1913168 | 1913179 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | 317147396 |
| 106. | NW_001884668 | GATA | 3 | 1925737 | 1925748 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | 169775299 |
| 107. | NW_001884668 | CGTT | 3 | 1935267 | 1935278 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 108. | NW_001884668 | CATA | 3 | 1967067 | 1967078 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 109. | NW_001884668 | ACAT | 3 | 1967329 | 1967340 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 110. | NW_001884668 | GACT | 3 | 1995068 | 1995079 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 111. | NW_001884668 | TGTA | 3 | 2014179 | 2014190 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 112. | NW_001884668 | TTTG | 3 | 2018967 | 2018978 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | 317147458 |
| 113. | NW_001884668 | TCTT | 3 | 2121143 | 2121154 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 317147511 |
| 114. | NW_001884668 | GATT | 3 | 2126948 | 2126959 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 115. | NW_001884668 | GATT | 3 | 2146858 | 2146869 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 116. | NW_001884668 | AGAA | 3 | 2155166 | 2155177 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 117. | NW_001884668 | TGTA | 3 | 2155814 | 2155825 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 118. | NW_001884668 | ATGA | 3 | 2178726 | 2178737 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 119. | NW_001884668 | ATAC | 3 | 2182227 | 2182238 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 120. | NW_001884668 | TACA | 3 | 2194089 | 2194100 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 121. | NW_001884668 | TCCT | 3 | 2205213 | 2205224 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 122. | NW_001884668 | ATGT | 5 | 2207549 | 2207568 | 20 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 123. | NW_001884668 | TTTC | 4 | 2212562 | 2212577 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 124. | NW_001884668 | ATTC | 3 | 2230183 | 2230194 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 125. | NW_001884668 | TATG | 3 | 2243913 | 2243924 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 126. | NW_001884668 | AGAA | 5 | 2246856 | 2246875 | 20 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 127. | NW_001884668 | ATAA | 3 | 2269050 | 2269061 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 128. | NW_001884668 | TCTT | 3 | 2288674 | 2288685 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 317147582 |
| 129. | NW_001884668 | TTCT | 3 | 2292299 | 2292310 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 317147582 |
| 130. | NW_001884668 | TCTT | 6 | 2305929 | 2305952 | 24 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 131. | NW_001884668 | GTAT | 3 | 2315178 | 2315189 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 132. | NW_001884668 | ACAA | 3 | 2315686 | 2315697 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 133. | NW_001884668 | TATT | 3 | 2323473 | 2323484 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |