List of
Perfect Tri
-nucleotide repeats in Aspergillus oryzae RIB40
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001884666 | TTA | 8 | 154951 | 154974 | 24 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001884666 | CAG | 4 | 181445 | 181456 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 317146443 |
| 3. | NW_001884666 | CAT | 4 | 185722 | 185733 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 317145285 |
| 4. | NW_001884666 | TAT | 4 | 260070 | 260081 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 5. | NW_001884666 | TGT | 4 | 270016 | 270027 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 6. | NW_001884666 | AGT | 4 | 302140 | 302151 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 317145328 |
| 7. | NW_001884666 | AGT | 4 | 392835 | 392846 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 8. | NW_001884666 | TCG | 4 | 435608 | 435619 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 317145396 |
| 9. | NW_001884666 | TCA | 5 | 443671 | 443685 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 317145398 |
| 10. | NW_001884666 | TCC | 7 | 477282 | 477302 | 21 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 11. | NW_001884666 | AGA | 4 | 489078 | 489089 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 12. | NW_001884666 | AGA | 5 | 510357 | 510371 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 169772619 |
| 13. | NW_001884666 | ACC | 4 | 513389 | 513400 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 14. | NW_001884666 | CAT | 7 | 542133 | 542153 | 21 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 15. | NW_001884666 | ATC | 4 | 562571 | 562582 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 169772661 |
| 16. | NW_001884666 | GGA | 4 | 566439 | 566450 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 169772665 |
| 17. | NW_001884666 | TAT | 5 | 613419 | 613433 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 18. | NW_001884666 | TAA | 4 | 631057 | 631068 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 19. | NW_001884666 | GCG | 4 | 637373 | 637384 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 317146490 |
| 20. | NW_001884666 | TCC | 5 | 654672 | 654686 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 317145486 |
| 21. | NW_001884666 | AGG | 10 | 693315 | 693344 | 30 | 33.33% | 0.00% | 66.67% | 0.00% | 317146498 |
| 22. | NW_001884666 | ATC | 4 | 796559 | 796570 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 23. | NW_001884666 | AAG | 4 | 804796 | 804807 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 169772823 |
| 24. | NW_001884666 | TCT | 6 | 808235 | 808252 | 18 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 25. | NW_001884666 | TAG | 4 | 829376 | 829387 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 26. | NW_001884666 | TGG | 4 | 829388 | 829399 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 27. | NW_001884666 | GGC | 4 | 852501 | 852512 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 317145568 |
| 28. | NW_001884666 | TCG | 5 | 863203 | 863217 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 169772859 |
| 29. | NW_001884666 | CCA | 4 | 864072 | 864083 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 30. | NW_001884666 | GCA | 4 | 944278 | 944289 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 169772917 |
| 31. | NW_001884666 | TGT | 5 | 953662 | 953676 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 169772923 |
| 32. | NW_001884666 | GAA | 14 | 1018124 | 1018165 | 42 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 33. | NW_001884666 | GTG | 7 | 1078590 | 1078610 | 21 | 0.00% | 33.33% | 66.67% | 0.00% | 317146522 |
| 34. | NW_001884666 | GGT | 4 | 1106062 | 1106073 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 317145669 |
| 35. | NW_001884666 | CGG | 4 | 1200022 | 1200033 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 317145705 |
| 36. | NW_001884666 | ATC | 4 | 1259109 | 1259120 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 317145734 |
| 37. | NW_001884666 | GCT | 4 | 1277118 | 1277129 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 169773133 |
| 38. | NW_001884666 | CCA | 4 | 1289259 | 1289270 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 39. | NW_001884666 | TAT | 5 | 1323350 | 1323364 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 40. | NW_001884666 | AAG | 5 | 1336386 | 1336400 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 317145764 |
| 41. | NW_001884666 | CTT | 4 | 1336665 | 1336676 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 42. | NW_001884666 | CTT | 7 | 1344525 | 1344545 | 21 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 43. | NW_001884666 | CTT | 4 | 1375797 | 1375808 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 169773191 |
| 44. | NW_001884666 | ACT | 4 | 1431797 | 1431808 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 45. | NW_001884666 | GAC | 4 | 1467597 | 1467608 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 317145822 |
| 46. | NW_001884666 | GAA | 4 | 1475448 | 1475459 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 47. | NW_001884666 | AGA | 4 | 1497594 | 1497605 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 48. | NW_001884666 | ATA | 4 | 1518062 | 1518073 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 49. | NW_001884666 | CTC | 4 | 1520074 | 1520085 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 50. | NW_001884666 | CGG | 5 | 1576581 | 1576595 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 51. | NW_001884666 | GTG | 4 | 1576804 | 1576815 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 52. | NW_001884666 | TGT | 5 | 1576818 | 1576832 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 53. | NW_001884666 | TAT | 4 | 1580616 | 1580627 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 54. | NW_001884666 | CAA | 4 | 1610640 | 1610651 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 317145885 |
| 55. | NW_001884666 | GAA | 5 | 1613440 | 1613454 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 56. | NW_001884666 | CCA | 4 | 1622134 | 1622145 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 57. | NW_001884666 | CAC | 4 | 1647868 | 1647879 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 58. | NW_001884666 | TTG | 4 | 1656465 | 1656476 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 317145909 |
| 59. | NW_001884666 | TGC | 5 | 1656475 | 1656489 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 317145909 |
| 60. | NW_001884666 | TGA | 4 | 1682966 | 1682977 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 169773391 |
| 61. | NW_001884666 | GAA | 4 | 1689113 | 1689124 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 169773397 |
| 62. | NW_001884666 | ATT | 5 | 1739570 | 1739584 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 63. | NW_001884666 | CTT | 7 | 1742845 | 1742865 | 21 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 64. | NW_001884666 | CAG | 4 | 1798633 | 1798644 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 317145974 |
| 65. | NW_001884666 | TAA | 4 | 1809951 | 1809962 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 66. | NW_001884666 | GTT | 8 | 1815625 | 1815648 | 24 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 67. | NW_001884666 | GGA | 4 | 1818241 | 1818252 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 317145981 |
| 68. | NW_001884666 | GCA | 4 | 1822331 | 1822342 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 317145983 |
| 69. | NW_001884666 | TAT | 6 | 1839999 | 1840016 | 18 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 70. | NW_001884666 | CAG | 4 | 1867695 | 1867706 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 169773509 |
| 71. | NW_001884666 | AGT | 4 | 1889151 | 1889162 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 72. | NW_001884666 | AGT | 4 | 1900116 | 1900127 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 73. | NW_001884666 | ATT | 4 | 1902698 | 1902709 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 74. | NW_001884666 | CAG | 4 | 1904621 | 1904632 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 317146020 |
| 75. | NW_001884666 | TGG | 4 | 2026688 | 2026699 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 317146089 |
| 76. | NW_001884666 | GCA | 4 | 2030789 | 2030800 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 317146089 |
| 77. | NW_001884666 | GGC | 4 | 2052881 | 2052892 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 169773653 |
| 78. | NW_001884666 | CTT | 4 | 2060371 | 2060382 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 79. | NW_001884666 | CTA | 4 | 2083488 | 2083499 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 80. | NW_001884666 | GCC | 5 | 2107204 | 2107218 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 169773691 |
| 81. | NW_001884666 | CAG | 4 | 2133983 | 2133994 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 317146567 |
| 82. | NW_001884666 | CAG | 11 | 2135363 | 2135395 | 33 | 33.33% | 0.00% | 33.33% | 33.33% | 317146567 |
| 83. | NW_001884666 | ATG | 5 | 2139042 | 2139056 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 317146147 |
| 84. | NW_001884666 | TCA | 4 | 2140710 | 2140721 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 169773713 |
| 85. | NW_001884666 | CCA | 4 | 2186083 | 2186094 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 169773743 |
| 86. | NW_001884666 | GTG | 4 | 2188986 | 2188997 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 317146179 |
| 87. | NW_001884666 | AGT | 4 | 2203253 | 2203264 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 88. | NW_001884666 | CCA | 4 | 2211678 | 2211689 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 89. | NW_001884666 | CCA | 4 | 2241375 | 2241386 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 90. | NW_001884666 | TCT | 6 | 2264977 | 2264994 | 18 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 91. | NW_001884666 | ATT | 4 | 2320692 | 2320703 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 92. | NW_001884666 | CTT | 5 | 2340841 | 2340855 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 317146250 |
| 93. | NW_001884666 | CCA | 4 | 2408035 | 2408046 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 169773891 |
| 94. | NW_001884666 | AGG | 4 | 2461554 | 2461565 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 95. | NW_001884666 | ACC | 4 | 2535862 | 2535873 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 96. | NW_001884666 | AGC | 6 | 2558836 | 2558853 | 18 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 97. | NW_001884666 | GAG | 4 | 2558865 | 2558876 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 98. | NW_001884666 | TGT | 4 | 2564887 | 2564898 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 99. | NW_001884666 | TGC | 7 | 2578056 | 2578076 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 100. | NW_001884666 | TGG | 4 | 2580560 | 2580571 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 101. | NW_001884666 | CGC | 4 | 2592287 | 2592298 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 317146577 |
| 102. | NW_001884666 | TAT | 6 | 2597240 | 2597257 | 18 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 103. | NW_001884666 | TGC | 4 | 2598457 | 2598468 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 317146384 |
| 104. | NW_001884666 | TAT | 7 | 2615109 | 2615129 | 21 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 105. | NW_001884666 | ATA | 5 | 2626903 | 2626917 | 15 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 106. | NW_001884666 | TAA | 4 | 2661229 | 2661240 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |