List of
Perfect Tetra
-nucleotide repeats in Aspergillus oryzae RIB40
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001884660 | TTTG | 3 | 545 | 556 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 2. | NW_001884660 | TAAA | 4 | 36411 | 36426 | 16 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001884660 | TATT | 3 | 36799 | 36810 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 4. | NW_001884660 | TAGA | 3 | 37472 | 37483 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 5. | NW_001884660 | CATG | 3 | 123145 | 123156 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 6. | NW_001884660 | AGAA | 3 | 176676 | 176687 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 7. | NW_001884660 | ATTT | 3 | 184555 | 184566 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 8. | NW_001884660 | TATT | 3 | 234530 | 234541 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 9. | NW_001884660 | TGAT | 3 | 252449 | 252460 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 10. | NW_001884660 | CTTT | 3 | 324210 | 324221 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 11. | NW_001884660 | AGAA | 3 | 429383 | 429394 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 317138093 |
| 12. | NW_001884660 | GAAT | 4 | 438249 | 438264 | 16 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 13. | NW_001884660 | TTTG | 3 | 443805 | 443816 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 14. | NW_001884660 | TTTC | 3 | 493935 | 493946 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 15. | NW_001884660 | CTCC | 7 | 495536 | 495563 | 28 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 16. | NW_001884660 | TGTA | 4 | 515093 | 515108 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 17. | NW_001884660 | GAAA | 3 | 537264 | 537275 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 18. | NW_001884660 | CAGC | 3 | 545860 | 545871 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 19. | NW_001884660 | GACT | 3 | 555792 | 555803 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 20. | NW_001884660 | TATT | 5 | 560858 | 560877 | 20 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 21. | NW_001884660 | GCTA | 3 | 563922 | 563933 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 22. | NW_001884660 | TACA | 3 | 580356 | 580367 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 23. | NW_001884660 | TAGA | 3 | 598572 | 598583 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 24. | NW_001884660 | CAAC | 3 | 604308 | 604319 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 25. | NW_001884660 | ACAA | 3 | 622725 | 622736 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 26. | NW_001884660 | ATGT | 6 | 641753 | 641776 | 24 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 27. | NW_001884660 | CAAA | 3 | 684928 | 684939 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 28. | NW_001884660 | CATA | 3 | 711915 | 711926 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | 317138211 |
| 29. | NW_001884660 | CTTT | 4 | 724896 | 724911 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | 317138215 |
| 30. | NW_001884660 | TTTC | 3 | 757276 | 757287 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 31. | NW_001884660 | GAAA | 3 | 768441 | 768452 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 317138229 |
| 32. | NW_001884660 | GATT | 3 | 768604 | 768615 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 317138229 |
| 33. | NW_001884660 | TAAT | 3 | 775032 | 775043 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 34. | NW_001884660 | CTTT | 3 | 780790 | 780801 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 35. | NW_001884660 | TTGG | 3 | 780864 | 780875 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 36. | NW_001884660 | CTAT | 4 | 807928 | 807943 | 16 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 37. | NW_001884660 | TTTC | 3 | 833675 | 833686 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 38. | NW_001884660 | TCCT | 3 | 866226 | 866237 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 39. | NW_001884660 | TTTC | 3 | 870746 | 870757 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 40. | NW_001884660 | AAGA | 3 | 883616 | 883627 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 41. | NW_001884660 | CATC | 3 | 899131 | 899142 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 317138306 |
| 42. | NW_001884660 | AATA | 3 | 902299 | 902310 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | 317138306 |
| 43. | NW_001884660 | CTTT | 3 | 915972 | 915983 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 44. | NW_001884660 | TGAT | 3 | 919903 | 919914 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 45. | NW_001884660 | GTGA | 3 | 972710 | 972721 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 317138336 |
| 46. | NW_001884660 | AAAC | 3 | 976580 | 976591 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 47. | NW_001884660 | ATGT | 3 | 979687 | 979698 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 48. | NW_001884660 | TACA | 3 | 979728 | 979739 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 49. | NW_001884660 | GTTG | 3 | 1027685 | 1027696 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | 317138851 |
| 50. | NW_001884660 | CTTC | 4 | 1032572 | 1032587 | 16 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 51. | NW_001884660 | TCTT | 3 | 1032665 | 1032676 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 52. | NW_001884660 | AATT | 3 | 1034693 | 1034704 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 53. | NW_001884660 | TTCT | 3 | 1061548 | 1061559 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 317138383 |
| 54. | NW_001884660 | CTTC | 3 | 1074659 | 1074670 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 169764801 |
| 55. | NW_001884660 | ATTC | 3 | 1089558 | 1089569 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 56. | NW_001884660 | CGGT | 3 | 1095333 | 1095344 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 57. | NW_001884660 | GAAA | 5 | 1143902 | 1143921 | 20 | 75.00% | 0.00% | 25.00% | 0.00% | 317138427 |
| 58. | NW_001884660 | CAAT | 3 | 1171847 | 1171858 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 59. | NW_001884660 | TGAC | 4 | 1189018 | 1189033 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | 317138452 |
| 60. | NW_001884660 | TACG | 3 | 1195406 | 1195417 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 61. | NW_001884660 | TGGT | 3 | 1196200 | 1196211 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 62. | NW_001884660 | AGAA | 3 | 1200144 | 1200155 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 63. | NW_001884660 | TCTT | 3 | 1202515 | 1202526 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 64. | NW_001884660 | GTAT | 3 | 1230112 | 1230123 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 65. | NW_001884660 | TATG | 3 | 1249759 | 1249770 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 66. | NW_001884660 | TGAA | 3 | 1274971 | 1274982 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 67. | NW_001884660 | ACCA | 3 | 1277686 | 1277697 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 68. | NW_001884660 | GTAT | 3 | 1296820 | 1296831 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 69. | NW_001884660 | ACTA | 3 | 1298372 | 1298383 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 70. | NW_001884660 | TTGA | 5 | 1301970 | 1301989 | 20 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 71. | NW_001884660 | TTGA | 4 | 1304935 | 1304950 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 72. | NW_001884660 | GCAT | 3 | 1305344 | 1305355 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 73. | NW_001884660 | CTGA | 3 | 1308211 | 1308222 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 74. | NW_001884660 | TTTA | 3 | 1320062 | 1320073 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 75. | NW_001884660 | GAAA | 3 | 1326360 | 1326371 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 76. | NW_001884660 | CTTT | 4 | 1327286 | 1327301 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 77. | NW_001884660 | GATT | 8 | 1363702 | 1363733 | 32 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 78. | NW_001884660 | TATG | 3 | 1366177 | 1366188 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 79. | NW_001884660 | ATAA | 9 | 1366467 | 1366502 | 36 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 80. | NW_001884660 | TGAT | 3 | 1375518 | 1375529 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 81. | NW_001884660 | GGCT | 3 | 1427339 | 1427350 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 169765015 |
| 82. | NW_001884660 | TGAT | 3 | 1448512 | 1448523 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 83. | NW_001884660 | AACC | 3 | 1503667 | 1503678 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | 317138875 |
| 84. | NW_001884660 | CAAA | 3 | 1519441 | 1519452 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 85. | NW_001884660 | ATAC | 4 | 1535802 | 1535817 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 86. | NW_001884660 | ATGT | 3 | 1575745 | 1575756 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 87. | NW_001884660 | TATT | 3 | 1575833 | 1575844 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 88. | NW_001884660 | ATGG | 3 | 1576142 | 1576153 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 89. | NW_001884660 | TTAG | 3 | 1633353 | 1633364 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 90. | NW_001884660 | CCCT | 3 | 1643487 | 1643498 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 317138634 |
| 91. | NW_001884660 | ACAA | 3 | 1654185 | 1654196 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | 169765155 |
| 92. | NW_001884660 | TTAT | 3 | 1670283 | 1670294 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 93. | NW_001884660 | GAAA | 3 | 1683053 | 1683064 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 94. | NW_001884660 | TCAA | 3 | 1705944 | 1705955 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 95. | NW_001884660 | TATT | 5 | 1713946 | 1713965 | 20 | 25.00% | 75.00% | 0.00% | 0.00% | 317138675 |
| 96. | NW_001884660 | AGAA | 3 | 1763782 | 1763793 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 97. | NW_001884660 | TCTT | 3 | 1771787 | 1771798 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 98. | NW_001884660 | TTTC | 4 | 1772537 | 1772552 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 99. | NW_001884660 | AAAT | 3 | 1784640 | 1784651 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 100. | NW_001884660 | TCTT | 7 | 1811413 | 1811440 | 28 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 101. | NW_001884660 | AGAA | 5 | 1831020 | 1831039 | 20 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 102. | NW_001884660 | TTTC | 3 | 1832729 | 1832740 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 103. | NW_001884660 | ATAC | 4 | 1838784 | 1838799 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 104. | NW_001884660 | TCTT | 10 | 1841574 | 1841613 | 40 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 105. | NW_001884660 | TCCT | 4 | 1843415 | 1843430 | 16 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 106. | NW_001884660 | ATAC | 3 | 1859765 | 1859776 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 107. | NW_001884660 | TAAA | 3 | 1863729 | 1863740 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 108. | NW_001884660 | TGGT | 3 | 1866929 | 1866940 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 109. | NW_001884660 | TATC | 3 | 1912574 | 1912585 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |