List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092749 | TGT | 4 | 2947 | 2959 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 2. | NW_001092749 | ACG | 7 | 3020 | 3040 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 3. | NW_001092749 | CGT | 4 | 4161 | 4172 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 4. | NW_001092749 | ACC | 4 | 6142 | 6153 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85117615 |
| 5. | NW_001092749 | AAC | 5 | 11082 | 11096 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85117619 |
| 6. | NW_001092749 | CAG | 5 | 11420 | 11434 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85117619 |
| 7. | NW_001092749 | AGC | 4 | 11436 | 11447 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85117619 |
| 8. | NW_001092749 | AGC | 8 | 11509 | 11532 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | 85117619 |
| 9. | NW_001092749 | TCA | 4 | 11811 | 11822 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 10. | NW_001092749 | GCG | 4 | 13705 | 13715 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85117624 |
| 11. | NW_001092749 | ACA | 4 | 14131 | 14142 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85117624 |
| 12. | NW_001092749 | AGG | 4 | 16163 | 16174 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85117629 |
| 13. | NW_001092749 | CGG | 4 | 19780 | 19791 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85117633 |
| 14. | NW_001092749 | TAT | 4 | 20143 | 20153 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 15. | NW_001092749 | ATC | 5 | 20614 | 20628 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 85117638 |
| 16. | NW_001092749 | TGC | 6 | 22699 | 22715 | 17 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 17. | NW_001092749 | CAT | 4 | 23014 | 23024 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 18. | NW_001092749 | GCG | 4 | 23815 | 23825 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85117642 |
| 19. | NW_001092749 | TTC | 4 | 26584 | 26594 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 20. | NW_001092749 | CAG | 4 | 27176 | 27187 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85117651 |
| 21. | NW_001092749 | CAG | 4 | 27455 | 27466 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85117651 |
| 22. | NW_001092749 | TCA | 4 | 28124 | 28135 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85117651 |
| 23. | NW_001092749 | CCT | 4 | 29787 | 29800 | 14 | 0.00% | 33.33% | 0.00% | 66.67% | 85117655 |
| 24. | NW_001092749 | TGC | 4 | 32531 | 32542 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85117659 |
| 25. | NW_001092749 | CGG | 4 | 33389 | 33400 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85117659 |
| 26. | NW_001092749 | CCA | 5 | 39586 | 39600 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 27. | NW_001092749 | ACG | 4 | 40809 | 40820 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 28. | NW_001092749 | AGG | 4 | 41981 | 41992 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 29. | NW_001092749 | AGT | 5 | 42036 | 42050 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 30. | NW_001092749 | CTA | 4 | 42157 | 42167 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 31. | NW_001092749 | TAC | 4 | 42581 | 42592 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 32. | NW_001092749 | TAT | 4 | 42658 | 42668 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 33. | NW_001092749 | TAC | 4 | 43014 | 43025 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 34. | NW_001092749 | TAT | 4 | 43096 | 43106 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 35. | NW_001092749 | TTA | 5 | 43303 | 43317 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 36. | NW_001092749 | CTT | 5 | 43953 | 43967 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 37. | NW_001092749 | TAT | 5 | 44308 | 44322 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 38. | NW_001092749 | CTG | 4 | 45602 | 45614 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | 85117668 |
| 39. | NW_001092749 | CAT | 4 | 45995 | 46005 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85117668 |
| 40. | NW_001092749 | CGG | 4 | 46651 | 46662 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85117668 |
| 41. | NW_001092749 | GAG | 7 | 49134 | 49153 | 20 | 33.33% | 0.00% | 66.67% | 0.00% | 85117672 |
| 42. | NW_001092749 | TGG | 4 | 55282 | 55293 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 43. | NW_001092749 | TGG | 4 | 56462 | 56473 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 44. | NW_001092749 | TGG | 4 | 60153 | 60164 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85117684 |
| 45. | NW_001092749 | AAG | 4 | 61588 | 61599 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85117688 |
| 46. | NW_001092749 | GGA | 4 | 62032 | 62043 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 47. | NW_001092749 | ACC | 4 | 65616 | 65628 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | 85117696 |
| 48. | NW_001092749 | GTT | 4 | 68029 | 68039 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 49. | NW_001092749 | AAG | 4 | 68081 | 68091 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 50. | NW_001092749 | GAG | 4 | 70173 | 70184 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85117705 |
| 51. | NW_001092749 | GAG | 9 | 70188 | 70214 | 27 | 33.33% | 0.00% | 66.67% | 0.00% | 85117705 |
| 52. | NW_001092749 | GAA | 4 | 73260 | 73271 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85117713 |
| 53. | NW_001092749 | TCC | 4 | 73530 | 73541 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85117713 |
| 54. | NW_001092749 | CAG | 4 | 77360 | 77371 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85117722 |
| 55. | NW_001092749 | CAA | 9 | 77369 | 77395 | 27 | 66.67% | 0.00% | 0.00% | 33.33% | 85117722 |
| 56. | NW_001092749 | AAC | 6 | 77478 | 77495 | 18 | 66.67% | 0.00% | 0.00% | 33.33% | 85117722 |
| 57. | NW_001092749 | CTG | 4 | 80062 | 80072 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85117726 |
| 58. | NW_001092749 | TGG | 4 | 80449 | 80460 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85117726 |
| 59. | NW_001092749 | GCT | 4 | 81429 | 81441 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 60. | NW_001092749 | CAA | 4 | 81632 | 81643 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 61. | NW_001092749 | TCA | 4 | 81827 | 81838 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 62. | NW_001092749 | ACT | 4 | 85588 | 85598 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 63. | NW_001092749 | TCG | 4 | 87354 | 87365 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 64. | NW_001092749 | CTT | 4 | 87536 | 87548 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 65. | NW_001092749 | CTC | 5 | 88347 | 88361 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85117734 |
| 66. | NW_001092749 | ACA | 5 | 88972 | 88986 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85117734 |
| 67. | NW_001092749 | ATC | 4 | 89585 | 89596 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85117738 |
| 68. | NW_001092749 | GCG | 4 | 90523 | 90533 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85117738 |
| 69. | NW_001092749 | TCA | 4 | 91246 | 91256 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85117738 |
| 70. | NW_001092749 | ACG | 4 | 91929 | 91940 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 71. | NW_001092749 | AGA | 4 | 94185 | 94195 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 72. | NW_001092749 | TTC | 4 | 95157 | 95168 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 73. | NW_001092749 | TCA | 9 | 102632 | 102657 | 26 | 33.33% | 33.33% | 0.00% | 33.33% | 85117755 |
| 74. | NW_001092749 | TCA | 4 | 102832 | 102843 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85117755 |
| 75. | NW_001092749 | GCC | 4 | 102939 | 102951 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | 85117755 |
| 76. | NW_001092749 | CCT | 4 | 102962 | 102973 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85117755 |
| 77. | NW_001092749 | GGT | 4 | 103308 | 103319 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85117755 |
| 78. | NW_001092749 | CCG | 4 | 109213 | 109225 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | 85117759 |
| 79. | NW_001092749 | CAG | 4 | 113340 | 113351 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85117759 |
| 80. | NW_001092749 | GTG | 4 | 114261 | 114272 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85117759 |
| 81. | NW_001092749 | ATG | 5 | 116249 | 116263 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 82. | NW_001092749 | GCA | 4 | 118075 | 118085 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 83. | NW_001092749 | TCC | 5 | 118891 | 118905 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 84. | NW_001092749 | CGT | 4 | 119167 | 119178 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 85. | NW_001092749 | GCT | 4 | 123572 | 123583 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85117772 |
| 86. | NW_001092749 | GAG | 6 | 125340 | 125356 | 17 | 33.33% | 0.00% | 66.67% | 0.00% | 85117776 |
| 87. | NW_001092749 | GAG | 4 | 129970 | 129981 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85117780 |
| 88. | NW_001092749 | CCA | 4 | 131738 | 131749 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85117780 |
| 89. | NW_001092749 | TGA | 4 | 132403 | 132414 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 90. | NW_001092749 | CGG | 7 | 133890 | 133910 | 21 | 0.00% | 0.00% | 66.67% | 33.33% | 85117784 |
| 91. | NW_001092749 | TGA | 12 | 135986 | 136021 | 36 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 92. | NW_001092749 | ACA | 5 | 137844 | 137858 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 93. | NW_001092749 | TGT | 4 | 142714 | 142724 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 94. | NW_001092749 | TTG | 4 | 142789 | 142800 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 95. | NW_001092749 | GGC | 4 | 147189 | 147200 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85117796 |
| 96. | NW_001092749 | CGC | 4 | 149740 | 149751 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85117804 |
| 97. | NW_001092749 | TCG | 4 | 152106 | 152117 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 98. | NW_001092749 | AGC | 4 | 152188 | 152198 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 99. | NW_001092749 | GTA | 4 | 154674 | 154684 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 100. | NW_001092749 | GAT | 4 | 154818 | 154829 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 101. | NW_001092749 | AGC | 4 | 156203 | 156214 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85117816 |
| 102. | NW_001092749 | AGA | 5 | 160118 | 160132 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85117816 |
| 103. | NW_001092749 | GCA | 5 | 163952 | 163966 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85117820 |
| 104. | NW_001092749 | GTA | 4 | 168761 | 168771 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85117825 |
| 105. | NW_001092749 | GAG | 4 | 169882 | 169893 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 106. | NW_001092749 | CTC | 5 | 170789 | 170802 | 14 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 107. | NW_001092749 | TAT | 4 | 170973 | 170987 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 108. | NW_001092749 | TTA | 4 | 171369 | 171380 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 109. | NW_001092749 | TAA | 5 | 171405 | 171419 | 15 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 110. | NW_001092749 | ATT | 7 | 171571 | 171591 | 21 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 111. | NW_001092749 | TAG | 4 | 172121 | 172131 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 112. | NW_001092749 | CAG | 5 | 174327 | 174341 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85117829 |
| 113. | NW_001092749 | TGA | 5 | 181056 | 181070 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85117838 |
| 114. | NW_001092749 | ACT | 4 | 184861 | 184871 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |