List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092745 | GGCG | 3 | 185 | 196 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 2. | NW_001092745 | GGCT | 3 | 1949 | 1959 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 3. | NW_001092745 | TCAT | 3 | 4021 | 4032 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 4. | NW_001092745 | AAAG | 3 | 5633 | 5643 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 5. | NW_001092745 | AGAC | 3 | 11554 | 11564 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 6. | NW_001092745 | GGGA | 3 | 16059 | 16071 | 13 | 25.00% | 0.00% | 75.00% | 0.00% | 85116714 |
| 7. | NW_001092745 | CGCT | 3 | 18406 | 18417 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 8. | NW_001092745 | CGGG | 3 | 20447 | 20457 | 11 | 0.00% | 0.00% | 75.00% | 25.00% | 85116718 |
| 9. | NW_001092745 | GTTT | 3 | 23491 | 23502 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | 85116722 |
| 10. | NW_001092745 | GGGA | 3 | 29058 | 29068 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 11. | NW_001092745 | AGTG | 3 | 30631 | 30642 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 12. | NW_001092745 | CATC | 3 | 30663 | 30674 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 13. | NW_001092745 | ACAA | 3 | 30796 | 30807 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 14. | NW_001092745 | CAGC | 4 | 42789 | 42804 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 15. | NW_001092745 | ACCC | 3 | 43040 | 43051 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 16. | NW_001092745 | CAAC | 3 | 44475 | 44487 | 13 | 50.00% | 0.00% | 0.00% | 50.00% | 85116744 |
| 17. | NW_001092745 | AGGT | 4 | 51066 | 51081 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 18. | NW_001092745 | CCAG | 3 | 54841 | 54852 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 85116758 |
| 19. | NW_001092745 | AGGG | 3 | 63841 | 63852 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 20. | NW_001092745 | TTCT | 3 | 66932 | 66944 | 13 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 21. | NW_001092745 | TCTG | 3 | 70360 | 70371 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 22. | NW_001092745 | GCCC | 3 | 71797 | 71808 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 23. | NW_001092745 | TCCG | 3 | 76639 | 76649 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85116787 |
| 24. | NW_001092745 | AGCA | 3 | 76824 | 76835 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85116787 |
| 25. | NW_001092745 | TCGT | 3 | 79302 | 79313 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 85116791 |
| 26. | NW_001092745 | CTGT | 3 | 82013 | 82024 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 27. | NW_001092745 | CTTG | 3 | 87236 | 87247 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 28. | NW_001092745 | AGGT | 3 | 88596 | 88607 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 29. | NW_001092745 | CTAC | 3 | 88723 | 88734 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 30. | NW_001092745 | TCCC | 3 | 89667 | 89678 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85116804 |
| 31. | NW_001092745 | TGGT | 3 | 90203 | 90214 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 32. | NW_001092745 | AGAT | 3 | 95369 | 95380 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 33. | NW_001092745 | TTCA | 3 | 95739 | 95750 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 34. | NW_001092745 | ATCC | 4 | 99965 | 99980 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 35. | NW_001092745 | CGTT | 3 | 103411 | 103423 | 13 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 36. | NW_001092745 | TGAT | 3 | 104012 | 104022 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | 85116816 |
| 37. | NW_001092745 | CCAG | 3 | 108843 | 108853 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | 85116820 |
| 38. | NW_001092745 | ATTC | 3 | 110462 | 110472 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 39. | NW_001092745 | TCCA | 5 | 110486 | 110505 | 20 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 40. | NW_001092745 | CGAC | 4 | 113167 | 113182 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | 85116829 |
| 41. | NW_001092745 | CAAA | 3 | 114395 | 114407 | 13 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 42. | NW_001092745 | ATAC | 5 | 114885 | 114904 | 20 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 43. | NW_001092745 | ATGC | 3 | 116129 | 116139 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85116833 |
| 44. | NW_001092745 | TCTG | 3 | 118231 | 118241 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 45. | NW_001092745 | TTCC | 3 | 118483 | 118493 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 46. | NW_001092745 | ATAC | 3 | 122277 | 122288 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 47. | NW_001092745 | CGAT | 3 | 123800 | 123811 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85116841 |
| 48. | NW_001092745 | GTAA | 3 | 131388 | 131399 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 49. | NW_001092745 | CGCC | 3 | 131859 | 131870 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | 85116849 |
| 50. | NW_001092745 | CGAT | 3 | 137706 | 137717 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85116853 |
| 51. | NW_001092745 | CAGT | 3 | 138997 | 139007 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85116853 |
| 52. | NW_001092745 | GAAC | 3 | 139348 | 139360 | 13 | 50.00% | 0.00% | 25.00% | 25.00% | 85116853 |
| 53. | NW_001092745 | ACCT | 3 | 141320 | 141331 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 54. | NW_001092745 | AAGT | 3 | 142660 | 142671 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 55. | NW_001092745 | CAGG | 3 | 143856 | 143867 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |