List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092741 | ATA | 5 | 587 | 600 | 14 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092741 | TAA | 4 | 757 | 768 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092741 | TAT | 4 | 1242 | 1254 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 4. | NW_001092741 | CTA | 4 | 2347 | 2359 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 5. | NW_001092741 | TCA | 4 | 6612 | 6624 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | 85115930 |
| 6. | NW_001092741 | TGA | 14 | 7100 | 7140 | 41 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 7. | NW_001092741 | TCT | 4 | 7827 | 7838 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85115934 |
| 8. | NW_001092741 | TCT | 4 | 8217 | 8228 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85115934 |
| 9. | NW_001092741 | GCT | 4 | 8291 | 8302 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115934 |
| 10. | NW_001092741 | GCG | 4 | 8781 | 8791 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85115934 |
| 11. | NW_001092741 | GCC | 4 | 15159 | 15170 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 12. | NW_001092741 | GTA | 4 | 18920 | 18931 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 13. | NW_001092741 | GAT | 4 | 20724 | 20735 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85115947 |
| 14. | NW_001092741 | CTC | 4 | 20852 | 20863 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85115947 |
| 15. | NW_001092741 | GAG | 4 | 22608 | 22619 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85115951 |
| 16. | NW_001092741 | AGA | 4 | 23018 | 23029 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85115951 |
| 17. | NW_001092741 | AGC | 4 | 25599 | 25610 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115951 |
| 18. | NW_001092741 | CAG | 4 | 25844 | 25855 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115951 |
| 19. | NW_001092741 | CAG | 4 | 26632 | 26643 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115951 |
| 20. | NW_001092741 | AGC | 4 | 30794 | 30805 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 21. | NW_001092741 | CAA | 4 | 30805 | 30816 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 22. | NW_001092741 | CAA | 5 | 30820 | 30834 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 23. | NW_001092741 | CAA | 4 | 33177 | 33188 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85115955 |
| 24. | NW_001092741 | CTC | 4 | 33973 | 33985 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85115955 |
| 25. | NW_001092741 | TCT | 4 | 36197 | 36209 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 26. | NW_001092741 | TGA | 7 | 37764 | 37784 | 21 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 27. | NW_001092741 | CAG | 5 | 38159 | 38172 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | 85115959 |
| 28. | NW_001092741 | CTT | 4 | 39495 | 39506 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85115959 |
| 29. | NW_001092741 | ACA | 4 | 40710 | 40721 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 30. | NW_001092741 | ACA | 5 | 41112 | 41126 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85115963 |
| 31. | NW_001092741 | CTC | 4 | 41236 | 41246 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85115963 |
| 32. | NW_001092741 | CAC | 4 | 41335 | 41346 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85115963 |
| 33. | NW_001092741 | GTG | 4 | 41865 | 41876 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 34. | NW_001092741 | AGG | 4 | 41877 | 41888 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 35. | NW_001092741 | TGG | 5 | 42719 | 42733 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 36. | NW_001092741 | ACG | 4 | 42920 | 42931 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 37. | NW_001092741 | TCC | 7 | 43393 | 43413 | 21 | 0.00% | 33.33% | 0.00% | 66.67% | 85115967 |
| 38. | NW_001092741 | GTG | 5 | 44232 | 44246 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85115967 |
| 39. | NW_001092741 | GAA | 4 | 45417 | 45427 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 40. | NW_001092741 | AGG | 4 | 49507 | 49518 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85115971 |
| 41. | NW_001092741 | CAG | 8 | 49574 | 49597 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | 85115971 |
| 42. | NW_001092741 | TCT | 4 | 50504 | 50515 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 43. | NW_001092741 | TTG | 4 | 50818 | 50829 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85115975 |
| 44. | NW_001092741 | GCT | 5 | 50856 | 50870 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85115975 |
| 45. | NW_001092741 | GCT | 4 | 50943 | 50954 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115975 |
| 46. | NW_001092741 | AGA | 4 | 51329 | 51339 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85115975 |
| 47. | NW_001092741 | GCA | 4 | 51381 | 51392 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115975 |
| 48. | NW_001092741 | CAC | 4 | 51466 | 51477 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85115975 |
| 49. | NW_001092741 | TGA | 4 | 51758 | 51768 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85115975 |
| 50. | NW_001092741 | TGG | 4 | 51861 | 51873 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | 85115975 |
| 51. | NW_001092741 | TTG | 4 | 52145 | 52155 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 52. | NW_001092741 | GAG | 4 | 55248 | 55258 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85115979 |
| 53. | NW_001092741 | CTT | 5 | 57185 | 57199 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85115983 |
| 54. | NW_001092741 | CTG | 4 | 57197 | 57208 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115983 |
| 55. | NW_001092741 | TCA | 4 | 57447 | 57458 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85115983 |
| 56. | NW_001092741 | CAC | 4 | 58011 | 58022 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 57. | NW_001092741 | TGC | 5 | 59342 | 59356 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85115987 |
| 58. | NW_001092741 | CTA | 4 | 60176 | 60187 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 59. | NW_001092741 | GAA | 4 | 60541 | 60552 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 60. | NW_001092741 | ATC | 4 | 60833 | 60844 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 61. | NW_001092741 | ACC | 4 | 60842 | 60852 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 62. | NW_001092741 | TTG | 4 | 61333 | 61344 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85115992 |
| 63. | NW_001092741 | TTA | 4 | 61351 | 61362 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | 85115992 |
| 64. | NW_001092741 | TTG | 5 | 61360 | 61374 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85115992 |
| 65. | NW_001092741 | TTG | 5 | 61378 | 61392 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85115992 |
| 66. | NW_001092741 | TTG | 4 | 62749 | 62760 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 67. | NW_001092741 | GGA | 4 | 71057 | 71068 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85116000 |
| 68. | NW_001092741 | AGG | 4 | 71192 | 71206 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85116000 |
| 69. | NW_001092741 | GAG | 4 | 72127 | 72137 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 70. | NW_001092741 | CTC | 6 | 73197 | 73213 | 17 | 0.00% | 33.33% | 0.00% | 66.67% | 85116004 |
| 71. | NW_001092741 | TGC | 4 | 78439 | 78450 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85116004 |
| 72. | NW_001092741 | TGA | 5 | 78695 | 78709 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85116004 |
| 73. | NW_001092741 | GGA | 4 | 78812 | 78824 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 74. | NW_001092741 | GAA | 5 | 79525 | 79539 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 75. | NW_001092741 | CTG | 4 | 79663 | 79674 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 76. | NW_001092741 | GCT | 4 | 81838 | 81848 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85116008 |
| 77. | NW_001092741 | GGT | 4 | 82189 | 82200 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85116008 |
| 78. | NW_001092741 | TCC | 4 | 84728 | 84739 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85116012 |
| 79. | NW_001092741 | GGT | 4 | 84898 | 84912 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85116012 |
| 80. | NW_001092741 | TGA | 4 | 86850 | 86860 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 81. | NW_001092741 | TCA | 4 | 88912 | 88923 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85116020 |
| 82. | NW_001092741 | ACA | 19 | 92399 | 92454 | 56 | 66.67% | 0.00% | 0.00% | 33.33% | 85116024 |
| 83. | NW_001092741 | CGC | 5 | 92699 | 92713 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85116024 |
| 84. | NW_001092741 | CTC | 4 | 92786 | 92797 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85116024 |
| 85. | NW_001092741 | TCC | 4 | 92967 | 92978 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85116024 |
| 86. | NW_001092741 | TCC | 4 | 93297 | 93308 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85116024 |
| 87. | NW_001092741 | TCG | 4 | 93309 | 93320 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85116024 |
| 88. | NW_001092741 | CAA | 5 | 93547 | 93561 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85116024 |
| 89. | NW_001092741 | GAT | 5 | 93702 | 93716 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85116024 |
| 90. | NW_001092741 | GCG | 5 | 94762 | 94775 | 14 | 0.00% | 0.00% | 66.67% | 33.33% | 85116028 |
| 91. | NW_001092741 | CTC | 5 | 95737 | 95751 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85116028 |
| 92. | NW_001092741 | GAG | 4 | 97003 | 97014 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85116033 |
| 93. | NW_001092741 | GAA | 4 | 97833 | 97843 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85116033 |
| 94. | NW_001092741 | ACC | 4 | 99762 | 99773 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85116033 |
| 95. | NW_001092741 | CGC | 4 | 99842 | 99853 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85116033 |
| 96. | NW_001092741 | CAC | 4 | 99981 | 99992 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85116033 |
| 97. | NW_001092741 | CAC | 4 | 100095 | 100106 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85116033 |
| 98. | NW_001092741 | CAA | 5 | 100215 | 100229 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85116033 |
| 99. | NW_001092741 | ACA | 8 | 100345 | 100368 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | 85116033 |
| 100. | NW_001092741 | CCT | 5 | 100435 | 100449 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85116033 |
| 101. | NW_001092741 | TGG | 4 | 100455 | 100466 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85116033 |
| 102. | NW_001092741 | AGA | 5 | 100611 | 100625 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85116033 |
| 103. | NW_001092741 | TGT | 21 | 101159 | 101221 | 63 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 104. | NW_001092741 | AGC | 4 | 102000 | 102010 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85116037 |
| 105. | NW_001092741 | TCT | 4 | 102758 | 102769 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85116037 |
| 106. | NW_001092741 | TGG | 4 | 105536 | 105548 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 107. | NW_001092741 | CTC | 4 | 106899 | 106910 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85116042 |
| 108. | NW_001092741 | TCA | 4 | 106945 | 106956 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85116042 |
| 109. | NW_001092741 | GGC | 5 | 107295 | 107309 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85116042 |
| 110. | NW_001092741 | TCT | 4 | 108155 | 108166 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85116042 |
| 111. | NW_001092741 | AGA | 4 | 109675 | 109686 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 112. | NW_001092741 | GGT | 4 | 111917 | 111928 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 113. | NW_001092741 | ACC | 4 | 113734 | 113746 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 114. | NW_001092741 | CAG | 5 | 115005 | 115019 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85116046 |
| 115. | NW_001092741 | GAG | 5 | 115044 | 115058 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85116046 |
| 116. | NW_001092741 | CAG | 8 | 115056 | 115079 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | 85116046 |
| 117. | NW_001092741 | CCT | 4 | 120129 | 120140 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85116054 |
| 118. | NW_001092741 | TCG | 4 | 121349 | 121360 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85116054 |
| 119. | NW_001092741 | AAG | 4 | 125233 | 125244 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85116062 |
| 120. | NW_001092741 | GAT | 4 | 125739 | 125750 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85116062 |
| 121. | NW_001092741 | GAG | 7 | 126960 | 126979 | 20 | 33.33% | 0.00% | 66.67% | 0.00% | 85116066 |
| 122. | NW_001092741 | TCT | 4 | 128816 | 128827 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |