List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092738 | TAT | 4 | 1399 | 1410 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | 85115332 |
| 2. | NW_001092738 | GAA | 4 | 2278 | 2289 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85115332 |
| 3. | NW_001092738 | TGG | 4 | 6484 | 6495 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85115341 |
| 4. | NW_001092738 | AAG | 4 | 10868 | 10879 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85115345 |
| 5. | NW_001092738 | TTG | 4 | 15468 | 15480 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 6. | NW_001092738 | CCT | 4 | 16113 | 16124 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85115354 |
| 7. | NW_001092738 | CTG | 5 | 17885 | 17899 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85115354 |
| 8. | NW_001092738 | CAA | 4 | 19498 | 19509 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 9. | NW_001092738 | CTC | 4 | 19804 | 19814 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85115358 |
| 10. | NW_001092738 | GAT | 4 | 21340 | 21351 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85115358 |
| 11. | NW_001092738 | AGG | 4 | 22553 | 22565 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85115358 |
| 12. | NW_001092738 | ATG | 4 | 25523 | 25534 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 13. | NW_001092738 | ACC | 4 | 26161 | 26171 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 14. | NW_001092738 | CGG | 4 | 26788 | 26799 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85115367 |
| 15. | NW_001092738 | GCG | 4 | 27842 | 27853 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85115367 |
| 16. | NW_001092738 | GAA | 4 | 33144 | 33155 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85115372 |
| 17. | NW_001092738 | TGA | 4 | 33919 | 33931 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 18. | NW_001092738 | GAA | 4 | 34680 | 34692 | 13 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 19. | NW_001092738 | CCT | 6 | 35189 | 35206 | 18 | 0.00% | 33.33% | 0.00% | 66.67% | 85115376 |
| 20. | NW_001092738 | GGA | 4 | 35828 | 35838 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85115376 |
| 21. | NW_001092738 | TTG | 7 | 37799 | 37819 | 21 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 22. | NW_001092738 | GCA | 4 | 40916 | 40926 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 23. | NW_001092738 | CGA | 4 | 41997 | 42008 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115380 |
| 24. | NW_001092738 | CTC | 4 | 42037 | 42047 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85115380 |
| 25. | NW_001092738 | ACA | 4 | 43495 | 43506 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85115380 |
| 26. | NW_001092738 | TGA | 4 | 44058 | 44069 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85115380 |
| 27. | NW_001092738 | AGC | 5 | 48053 | 48067 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85115384 |
| 28. | NW_001092738 | TCC | 4 | 48868 | 48879 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85115384 |
| 29. | NW_001092738 | GAC | 4 | 49167 | 49178 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115384 |
| 30. | NW_001092738 | GAA | 5 | 49197 | 49210 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | 85115384 |
| 31. | NW_001092738 | CGT | 4 | 50923 | 50934 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115388 |
| 32. | NW_001092738 | TGT | 5 | 50929 | 50943 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85115388 |
| 33. | NW_001092738 | GAG | 4 | 51024 | 51034 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85115388 |
| 34. | NW_001092738 | CTT | 4 | 51663 | 51674 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85115388 |
| 35. | NW_001092738 | TGC | 4 | 52116 | 52127 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115388 |
| 36. | NW_001092738 | GCG | 4 | 52354 | 52364 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85115388 |
| 37. | NW_001092738 | GGT | 4 | 52438 | 52449 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85115388 |
| 38. | NW_001092738 | GAT | 5 | 52447 | 52461 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85115388 |
| 39. | NW_001092738 | GTT | 8 | 52459 | 52482 | 24 | 0.00% | 66.67% | 33.33% | 0.00% | 85115388 |
| 40. | NW_001092738 | ACA | 5 | 53470 | 53484 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85115392 |
| 41. | NW_001092738 | CAA | 9 | 54154 | 54180 | 27 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 42. | NW_001092738 | CGC | 4 | 56208 | 56218 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85115400 |
| 43. | NW_001092738 | TCC | 4 | 58811 | 58822 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85115400 |
| 44. | NW_001092738 | GAA | 4 | 63199 | 63210 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 45. | NW_001092738 | ACT | 4 | 63475 | 63485 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 46. | NW_001092738 | TCC | 5 | 64901 | 64915 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 47. | NW_001092738 | AGA | 5 | 65465 | 65479 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 48. | NW_001092738 | ACC | 4 | 67007 | 67018 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85115410 |
| 49. | NW_001092738 | GTC | 4 | 67121 | 67131 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85115410 |
| 50. | NW_001092738 | AAG | 4 | 69288 | 69298 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 51. | NW_001092738 | GTC | 4 | 70549 | 70561 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 52. | NW_001092738 | GCC | 4 | 71244 | 71255 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85115415 |
| 53. | NW_001092738 | AGC | 4 | 72884 | 72895 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115419 |
| 54. | NW_001092738 | TCA | 4 | 74067 | 74078 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85115419 |
| 55. | NW_001092738 | TCG | 5 | 74735 | 74750 | 16 | 0.00% | 33.33% | 33.33% | 33.33% | 85115419 |
| 56. | NW_001092738 | GAT | 4 | 75439 | 75450 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 57. | NW_001092738 | TCT | 4 | 85029 | 85039 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 58. | NW_001092738 | CCT | 4 | 91302 | 91312 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85115440 |
| 59. | NW_001092738 | GTT | 4 | 93507 | 93518 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85115440 |
| 60. | NW_001092738 | TCC | 5 | 95630 | 95644 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 61. | NW_001092738 | CAA | 4 | 95765 | 95776 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85115444 |
| 62. | NW_001092738 | CAG | 8 | 95865 | 95887 | 23 | 33.33% | 0.00% | 33.33% | 33.33% | 85115444 |
| 63. | NW_001092738 | GCA | 4 | 95890 | 95901 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115444 |
| 64. | NW_001092738 | GCC | 4 | 96552 | 96563 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85115444 |
| 65. | NW_001092738 | TCC | 4 | 100568 | 100579 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85115448 |
| 66. | NW_001092738 | CAA | 5 | 100586 | 100600 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85115448 |
| 67. | NW_001092738 | CTC | 8 | 101649 | 101671 | 23 | 0.00% | 33.33% | 0.00% | 66.67% | 85115453 |
| 68. | NW_001092738 | TCT | 5 | 101774 | 101791 | 18 | 0.00% | 66.67% | 0.00% | 33.33% | 85115453 |
| 69. | NW_001092738 | GTT | 4 | 102046 | 102057 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85115453 |
| 70. | NW_001092738 | GAT | 15 | 102049 | 102093 | 45 | 33.33% | 33.33% | 33.33% | 0.00% | 85115453 |
| 71. | NW_001092738 | GAA | 4 | 102327 | 102337 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85115453 |
| 72. | NW_001092738 | GCT | 4 | 102372 | 102385 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | 85115453 |
| 73. | NW_001092738 | CAT | 4 | 102399 | 102410 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85115453 |
| 74. | NW_001092738 | TCT | 7 | 103686 | 103706 | 21 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 75. | NW_001092738 | TCC | 4 | 103701 | 103712 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 76. | NW_001092738 | ACC | 4 | 107996 | 108007 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 77. | NW_001092738 | TGC | 6 | 110046 | 110063 | 18 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 78. | NW_001092738 | CTT | 5 | 110121 | 110135 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 79. | NW_001092738 | CCA | 4 | 110906 | 110916 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85115466 |
| 80. | NW_001092738 | TGT | 4 | 114186 | 114197 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85115470 |
| 81. | NW_001092738 | AAC | 4 | 114384 | 114394 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | 85115470 |
| 82. | NW_001092738 | ACC | 5 | 115289 | 115303 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85115474 |
| 83. | NW_001092738 | ATC | 4 | 115988 | 115998 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85115474 |
| 84. | NW_001092738 | GGT | 5 | 116713 | 116727 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85115474 |
| 85. | NW_001092738 | TGA | 4 | 117287 | 117298 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 86. | NW_001092738 | GCT | 4 | 117696 | 117706 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 87. | NW_001092738 | CAA | 9 | 118260 | 118285 | 26 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 88. | NW_001092738 | CAA | 4 | 122218 | 122229 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85115478 |
| 89. | NW_001092738 | ACA | 5 | 122270 | 122284 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85115478 |
| 90. | NW_001092738 | CCT | 5 | 122329 | 122343 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85115478 |
| 91. | NW_001092738 | GAA | 4 | 123322 | 123332 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |