List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092737 | CAA | 4 | 1916 | 1930 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85115136 |
| 2. | NW_001092737 | CTC | 4 | 5911 | 5922 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 3. | NW_001092737 | CTC | 4 | 5974 | 5985 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 4. | NW_001092737 | CCT | 4 | 6002 | 6014 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 5. | NW_001092737 | CCT | 5 | 6318 | 6332 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 6. | NW_001092737 | CAA | 4 | 6392 | 6403 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 7. | NW_001092737 | GAT | 4 | 7833 | 7843 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85115140 |
| 8. | NW_001092737 | CGA | 4 | 7874 | 7885 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115140 |
| 9. | NW_001092737 | GTA | 5 | 11222 | 11237 | 16 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 10. | NW_001092737 | GGT | 4 | 11949 | 11960 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85115148 |
| 11. | NW_001092737 | CTG | 7 | 11987 | 12007 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85115148 |
| 12. | NW_001092737 | GCT | 4 | 12580 | 12591 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115148 |
| 13. | NW_001092737 | GGT | 7 | 12912 | 12932 | 21 | 0.00% | 33.33% | 66.67% | 0.00% | 85115148 |
| 14. | NW_001092737 | GTC | 4 | 13134 | 13145 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115148 |
| 15. | NW_001092737 | CTG | 4 | 13388 | 13399 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115148 |
| 16. | NW_001092737 | CAA | 4 | 15045 | 15056 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 17. | NW_001092737 | ACA | 6 | 15139 | 15156 | 18 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 18. | NW_001092737 | CAA | 4 | 15341 | 15352 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 19. | NW_001092737 | GAT | 5 | 16154 | 16168 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 20. | NW_001092737 | ATG | 4 | 16541 | 16552 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 21. | NW_001092737 | AGG | 4 | 28283 | 28294 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85115169 |
| 22. | NW_001092737 | CCG | 4 | 28339 | 28350 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85115169 |
| 23. | NW_001092737 | GAG | 4 | 29844 | 29855 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 24. | NW_001092737 | AGA | 5 | 29875 | 29888 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 25. | NW_001092737 | TCA | 4 | 34006 | 34017 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85115172 |
| 26. | NW_001092737 | GCC | 4 | 37815 | 37826 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 27. | NW_001092737 | CAG | 4 | 38394 | 38406 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 28. | NW_001092737 | GCT | 4 | 38665 | 38675 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 29. | NW_001092737 | TTG | 4 | 39427 | 39438 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85115179 |
| 30. | NW_001092737 | TTG | 33 | 40653 | 40752 | 100 | 0.00% | 66.67% | 33.33% | 0.00% | 85115182 |
| 31. | NW_001092737 | AGG | 4 | 40825 | 40836 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85115182 |
| 32. | NW_001092737 | TTC | 4 | 43369 | 43380 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85115186 |
| 33. | NW_001092737 | CGC | 5 | 45670 | 45683 | 14 | 0.00% | 0.00% | 33.33% | 66.67% | 85115190 |
| 34. | NW_001092737 | GTG | 4 | 47948 | 47959 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85115193 |
| 35. | NW_001092737 | GTG | 4 | 50145 | 50156 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85115200 |
| 36. | NW_001092737 | GGA | 4 | 50630 | 50641 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85115200 |
| 37. | NW_001092737 | TCT | 4 | 53695 | 53706 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85115204 |
| 38. | NW_001092737 | GTA | 4 | 53713 | 53724 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85115204 |
| 39. | NW_001092737 | GAG | 5 | 54667 | 54680 | 14 | 33.33% | 0.00% | 66.67% | 0.00% | 85115204 |
| 40. | NW_001092737 | AGC | 4 | 54840 | 54851 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 41. | NW_001092737 | GGT | 4 | 55413 | 55424 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 42. | NW_001092737 | CTC | 4 | 55687 | 55699 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 43. | NW_001092737 | CAC | 4 | 55722 | 55733 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 44. | NW_001092737 | TGG | 4 | 56070 | 56081 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 45. | NW_001092737 | AAC | 4 | 60635 | 60646 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 46. | NW_001092737 | CAA | 4 | 61236 | 61247 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85115216 |
| 47. | NW_001092737 | ACC | 4 | 61651 | 61662 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85115216 |
| 48. | NW_001092737 | CGA | 4 | 62830 | 62841 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115216 |
| 49. | NW_001092737 | CAG | 13 | 62924 | 62962 | 39 | 33.33% | 0.00% | 33.33% | 33.33% | 85115216 |
| 50. | NW_001092737 | AGC | 5 | 63373 | 63387 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85115216 |
| 51. | NW_001092737 | CAA | 4 | 63393 | 63404 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85115216 |
| 52. | NW_001092737 | CTT | 4 | 68876 | 68887 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 53. | NW_001092737 | CCA | 7 | 71343 | 71366 | 24 | 33.33% | 0.00% | 0.00% | 66.67% | 85115232 |
| 54. | NW_001092737 | CGG | 5 | 72601 | 72615 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85115232 |
| 55. | NW_001092737 | GAG | 4 | 72752 | 72763 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85115232 |
| 56. | NW_001092737 | GGA | 4 | 72854 | 72865 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85115232 |
| 57. | NW_001092737 | GCA | 4 | 74022 | 74034 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | 85115232 |
| 58. | NW_001092737 | TGT | 4 | 75665 | 75676 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 59. | NW_001092737 | TCT | 4 | 75744 | 75754 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 60. | NW_001092737 | GTG | 4 | 75869 | 75880 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 61. | NW_001092737 | ACA | 4 | 76424 | 76435 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85115236 |
| 62. | NW_001092737 | ACG | 4 | 76697 | 76708 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115236 |
| 63. | NW_001092737 | CAG | 5 | 77271 | 77285 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85115236 |
| 64. | NW_001092737 | AAC | 4 | 80052 | 80063 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 65. | NW_001092737 | TCT | 4 | 83623 | 83635 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 66. | NW_001092737 | TGT | 4 | 88186 | 88197 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 67. | NW_001092737 | GAC | 4 | 92318 | 92329 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 68. | NW_001092737 | CGA | 4 | 92418 | 92428 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 69. | NW_001092737 | CTT | 4 | 93128 | 93139 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 70. | NW_001092737 | TCT | 4 | 94111 | 94121 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 71. | NW_001092737 | GAC | 4 | 95068 | 95079 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115249 |
| 72. | NW_001092737 | TCA | 4 | 99879 | 99890 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85115253 |
| 73. | NW_001092737 | AGG | 4 | 100233 | 100243 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85115253 |
| 74. | NW_001092737 | TCT | 4 | 104828 | 104838 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 75. | NW_001092737 | AAC | 4 | 108496 | 108506 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 76. | NW_001092737 | AGA | 4 | 110679 | 110689 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 77. | NW_001092737 | TCG | 4 | 114837 | 114849 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 78. | NW_001092737 | ATA | 4 | 115481 | 115493 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 79. | NW_001092737 | TAA | 4 | 115572 | 115583 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 80. | NW_001092737 | ATA | 5 | 115907 | 115922 | 16 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 81. | NW_001092737 | TAA | 4 | 117105 | 117116 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 82. | NW_001092737 | ATA | 4 | 117122 | 117133 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 83. | NW_001092737 | ATA | 4 | 117140 | 117151 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 84. | NW_001092737 | CAC | 4 | 118569 | 118581 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | 85115276 |