List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092737 | TCCA | 3 | 395 | 405 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 2. | NW_001092737 | CGTC | 3 | 1322 | 1333 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 3. | NW_001092737 | CAAC | 3 | 3119 | 3129 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | 85115136 |
| 4. | NW_001092737 | GGGC | 3 | 3338 | 3349 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 5. | NW_001092737 | GAGG | 3 | 3440 | 3451 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 6. | NW_001092737 | AACA | 3 | 3739 | 3750 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 7. | NW_001092737 | ATCA | 8 | 3790 | 3820 | 31 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 8. | NW_001092737 | GGGA | 3 | 9227 | 9238 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 85115144 |
| 9. | NW_001092737 | AGGT | 3 | 9378 | 9390 | 13 | 25.00% | 25.00% | 50.00% | 0.00% | 85115144 |
| 10. | NW_001092737 | ATGA | 3 | 10152 | 10163 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 11. | NW_001092737 | GGGC | 3 | 10190 | 10201 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 12. | NW_001092737 | GTCG | 10 | 13885 | 13923 | 39 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 13. | NW_001092737 | TCAA | 4 | 14464 | 14483 | 20 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 14. | NW_001092737 | CACC | 3 | 15654 | 15665 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 15. | NW_001092737 | ACAT | 3 | 16259 | 16270 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 16. | NW_001092737 | ATTT | 3 | 17341 | 17352 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | 85115152 |
| 17. | NW_001092737 | TTCT | 3 | 22391 | 22403 | 13 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 18. | NW_001092737 | GCAG | 3 | 26565 | 26576 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85115164 |
| 19. | NW_001092737 | TCAG | 3 | 35171 | 35182 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 20. | NW_001092737 | TTGA | 6 | 37330 | 37353 | 24 | 25.00% | 50.00% | 25.00% | 0.00% | 85115176 |
| 21. | NW_001092737 | ACAG | 3 | 38407 | 38418 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 22. | NW_001092737 | GGAA | 3 | 40989 | 41001 | 13 | 50.00% | 0.00% | 50.00% | 0.00% | 85115182 |
| 23. | NW_001092737 | CTGA | 3 | 41062 | 41073 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85115182 |
| 24. | NW_001092737 | TACC | 3 | 44334 | 44345 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 25. | NW_001092737 | TGTA | 3 | 46453 | 46464 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 26. | NW_001092737 | TGGC | 3 | 47418 | 47429 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 27. | NW_001092737 | GAAG | 3 | 50710 | 50721 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | 85115200 |
| 28. | NW_001092737 | TCAC | 4 | 53042 | 53057 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 29. | NW_001092737 | CTCC | 3 | 53366 | 53377 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85115204 |
| 30. | NW_001092737 | GAAG | 3 | 54708 | 54718 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | 85115204 |
| 31. | NW_001092737 | CCAA | 4 | 54789 | 54804 | 16 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 32. | NW_001092737 | AAAG | 3 | 56322 | 56333 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 33. | NW_001092737 | GATC | 3 | 59054 | 59065 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 34. | NW_001092737 | GCAA | 3 | 63256 | 63266 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85115216 |
| 35. | NW_001092737 | GCGA | 3 | 64953 | 64963 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85115220 |
| 36. | NW_001092737 | TGGA | 3 | 65712 | 65722 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85115220 |
| 37. | NW_001092737 | GCTT | 3 | 68050 | 68061 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 85115224 |
| 38. | NW_001092737 | CAAA | 3 | 71059 | 71070 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 39. | NW_001092737 | GTCT | 4 | 78757 | 78772 | 16 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 40. | NW_001092737 | TGGC | 3 | 79691 | 79702 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 41. | NW_001092737 | ATAC | 3 | 81172 | 81183 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 42. | NW_001092737 | TTCC | 3 | 81911 | 81921 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | 85115241 |
| 43. | NW_001092737 | TGGC | 3 | 84668 | 84679 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 44. | NW_001092737 | CGGT | 4 | 84711 | 84726 | 16 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 45. | NW_001092737 | TAGG | 4 | 85151 | 85166 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 46. | NW_001092737 | GGCA | 3 | 85315 | 85326 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 47. | NW_001092737 | TACC | 4 | 86167 | 86182 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 48. | NW_001092737 | GAAA | 3 | 86955 | 86965 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 49. | NW_001092737 | TTTC | 3 | 87005 | 87016 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 50. | NW_001092737 | GGAA | 3 | 88791 | 88801 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 51. | NW_001092737 | GTTT | 3 | 94636 | 94647 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 52. | NW_001092737 | GGTA | 3 | 95113 | 95125 | 13 | 25.00% | 25.00% | 50.00% | 0.00% | 85115249 |
| 53. | NW_001092737 | CCTA | 3 | 97350 | 97361 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 54. | NW_001092737 | GCAT | 4 | 97399 | 97413 | 15 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 55. | NW_001092737 | ATCA | 3 | 98339 | 98349 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 56. | NW_001092737 | TGAC | 3 | 100472 | 100483 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85115253 |
| 57. | NW_001092737 | TGAT | 3 | 103100 | 103111 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 58. | NW_001092737 | GAAA | 3 | 110287 | 110299 | 13 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 59. | NW_001092737 | GTTG | 3 | 111853 | 111863 | 11 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 60. | NW_001092737 | TAGA | 3 | 114441 | 114451 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 61. | NW_001092737 | TTTA | 3 | 114774 | 114786 | 13 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 62. | NW_001092737 | CTAA | 3 | 115608 | 115619 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 63. | NW_001092737 | TTTA | 3 | 116723 | 116733 | 11 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 64. | NW_001092737 | TTAA | 3 | 117305 | 117316 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 65. | NW_001092737 | CATG | 3 | 118327 | 118338 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85115276 |
| 66. | NW_001092737 | CTGC | 4 | 120739 | 120754 | 16 | 0.00% | 25.00% | 25.00% | 50.00% | 85115276 |
| 67. | NW_001092737 | TACC | 3 | 121939 | 121950 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 68. | NW_001092737 | GTGC | 3 | 122418 | 122428 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |