List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092735 | CGAC | 3 | 444 | 455 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 85114710 |
| 2. | NW_001092735 | CCTG | 3 | 1908 | 1918 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85114710 |
| 3. | NW_001092735 | AAGG | 3 | 5738 | 5750 | 13 | 50.00% | 0.00% | 50.00% | 0.00% | 85114715 |
| 4. | NW_001092735 | CTGT | 3 | 5886 | 5896 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85114715 |
| 5. | NW_001092735 | GCTC | 3 | 6849 | 6860 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85114715 |
| 6. | NW_001092735 | CAAA | 3 | 7587 | 7598 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 7. | NW_001092735 | TCTT | 3 | 9335 | 9346 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85114719 |
| 8. | NW_001092735 | TATG | 3 | 15884 | 15895 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 9. | NW_001092735 | CCCT | 3 | 17529 | 17539 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | 85114729 |
| 10. | NW_001092735 | GAGG | 3 | 18432 | 18444 | 13 | 25.00% | 0.00% | 75.00% | 0.00% | 85114729 |
| 11. | NW_001092735 | CTTC | 3 | 20394 | 20405 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 85114733 |
| 12. | NW_001092735 | AGGG | 3 | 21705 | 21715 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 13. | NW_001092735 | GTAC | 3 | 26856 | 26867 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 14. | NW_001092735 | CGTT | 3 | 31007 | 31017 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 15. | NW_001092735 | CCCT | 3 | 34384 | 34396 | 13 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 16. | NW_001092735 | GATC | 3 | 37617 | 37627 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 17. | NW_001092735 | CTTT | 3 | 38348 | 38359 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85114747 |
| 18. | NW_001092735 | TGCC | 3 | 39282 | 39292 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 19. | NW_001092735 | GGCC | 3 | 48893 | 48905 | 13 | 0.00% | 0.00% | 50.00% | 50.00% | 85114760 |
| 20. | NW_001092735 | TCCG | 3 | 51811 | 51822 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85114764 |
| 21. | NW_001092735 | ATGG | 3 | 53522 | 53534 | 13 | 25.00% | 25.00% | 50.00% | 0.00% | 85114764 |
| 22. | NW_001092735 | TTTA | 3 | 54358 | 54368 | 11 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 23. | NW_001092735 | AACC | 3 | 54594 | 54605 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 24. | NW_001092735 | CAAA | 3 | 54759 | 54770 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 25. | NW_001092735 | AACC | 3 | 54926 | 54938 | 13 | 50.00% | 0.00% | 0.00% | 50.00% | 85114768 |
| 26. | NW_001092735 | TGTT | 3 | 57318 | 57329 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | 85114768 |
| 27. | NW_001092735 | ATGG | 3 | 58659 | 58669 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85114768 |
| 28. | NW_001092735 | GTCG | 3 | 58903 | 58914 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 29. | NW_001092735 | ATTG | 3 | 61679 | 61689 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | 85114773 |
| 30. | NW_001092735 | TTTC | 3 | 62131 | 62142 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 31. | NW_001092735 | TCAT | 3 | 63445 | 63455 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 32. | NW_001092735 | CAAC | 3 | 63575 | 63586 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | 85114777 |
| 33. | NW_001092735 | GGAA | 3 | 68788 | 68799 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | 85114782 |
| 34. | NW_001092735 | GGAG | 3 | 71733 | 71744 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 85114787 |
| 35. | NW_001092735 | AAAG | 3 | 72318 | 72328 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 36. | NW_001092735 | AGGT | 4 | 75590 | 75605 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | 85114795 |
| 37. | NW_001092735 | GAAA | 3 | 77395 | 77406 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 38. | NW_001092735 | GTTT | 3 | 79913 | 79923 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 39. | NW_001092735 | AGAA | 4 | 81132 | 81147 | 16 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 40. | NW_001092735 | CCAG | 3 | 81479 | 81490 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 41. | NW_001092735 | CTAC | 3 | 81725 | 81736 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 42. | NW_001092735 | CCCA | 3 | 83018 | 83029 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 43. | NW_001092735 | GCCA | 3 | 83445 | 83456 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 85114804 |
| 44. | NW_001092735 | GCCT | 3 | 85027 | 85037 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85114804 |
| 45. | NW_001092735 | GGTC | 3 | 86342 | 86352 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85114808 |
| 46. | NW_001092735 | CGTG | 3 | 87887 | 87898 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 47. | NW_001092735 | TTTG | 3 | 89079 | 89089 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 48. | NW_001092735 | TGCT | 5 | 89595 | 89615 | 21 | 0.00% | 50.00% | 25.00% | 25.00% | 85114813 |
| 49. | NW_001092735 | GGTT | 3 | 93073 | 93083 | 11 | 0.00% | 50.00% | 50.00% | 0.00% | 85114817 |
| 50. | NW_001092735 | GCCA | 3 | 95121 | 95131 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 51. | NW_001092735 | TACC | 3 | 96405 | 96415 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 52. | NW_001092735 | CAGC | 4 | 97333 | 97349 | 17 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 53. | NW_001092735 | CTTG | 4 | 98452 | 98467 | 16 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 54. | NW_001092735 | AGAC | 3 | 99015 | 99025 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 55. | NW_001092735 | TTCT | 4 | 99670 | 99685 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 56. | NW_001092735 | GTTG | 3 | 100154 | 100164 | 11 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 57. | NW_001092735 | CGAT | 3 | 101274 | 101285 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85114822 |
| 58. | NW_001092735 | CGCT | 3 | 102333 | 102345 | 13 | 0.00% | 25.00% | 25.00% | 50.00% | 85114822 |
| 59. | NW_001092735 | CGAA | 3 | 103751 | 103763 | 13 | 50.00% | 0.00% | 25.00% | 25.00% | 85114822 |
| 60. | NW_001092735 | TTCA | 3 | 105643 | 105655 | 13 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 61. | NW_001092735 | AGCA | 3 | 106009 | 106019 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 62. | NW_001092735 | ACCT | 3 | 107074 | 107085 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 63. | NW_001092735 | CCCA | 3 | 111206 | 111217 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | 85114827 |
| 64. | NW_001092735 | AGCC | 3 | 111582 | 111593 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 85114827 |
| 65. | NW_001092735 | ATGT | 3 | 112285 | 112296 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 85114827 |
| 66. | NW_001092735 | GATT | 9 | 116246 | 116281 | 36 | 25.00% | 50.00% | 25.00% | 0.00% | 85114831 |
| 67. | NW_001092735 | CCAT | 3 | 119081 | 119091 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |