List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092731 | AATT | 3 | 2449 | 2460 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092731 | AATT | 3 | 3062 | 3074 | 13 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092731 | TAAA | 3 | 3944 | 3955 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 4. | NW_001092731 | ATTA | 3 | 4092 | 4103 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 5. | NW_001092731 | ATAG | 3 | 6233 | 6244 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 6. | NW_001092731 | TACA | 4 | 9550 | 9564 | 15 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 7. | NW_001092731 | GTCC | 4 | 12333 | 12349 | 17 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 8. | NW_001092731 | ATCC | 3 | 14294 | 14305 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 9. | NW_001092731 | AGGG | 3 | 14716 | 14727 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 10. | NW_001092731 | CCTC | 3 | 17719 | 17730 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 11. | NW_001092731 | CAAG | 3 | 17797 | 17808 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 12. | NW_001092731 | TTCG | 6 | 18001 | 18024 | 24 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 13. | NW_001092731 | TTCA | 4 | 18035 | 18054 | 20 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 14. | NW_001092731 | TTCA | 4 | 18057 | 18076 | 20 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 15. | NW_001092731 | TTCA | 4 | 18079 | 18098 | 20 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 16. | NW_001092731 | TTCA | 6 | 18109 | 18132 | 24 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 17. | NW_001092731 | ATCG | 6 | 18465 | 18487 | 23 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 18. | NW_001092731 | CCTG | 5 | 18799 | 18818 | 20 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 19. | NW_001092731 | TTTG | 3 | 21303 | 21315 | 13 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 20. | NW_001092731 | GTAT | 4 | 21397 | 21412 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 21. | NW_001092731 | ATGT | 3 | 23189 | 23200 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 22. | NW_001092731 | TTTC | 3 | 24185 | 24196 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 23. | NW_001092731 | GAGC | 4 | 25351 | 25366 | 16 | 25.00% | 0.00% | 50.00% | 25.00% | 85114013 |
| 24. | NW_001092731 | CAGG | 6 | 26551 | 26574 | 24 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 25. | NW_001092731 | GGAA | 3 | 26663 | 26674 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 26. | NW_001092731 | GGGC | 3 | 30114 | 30124 | 11 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 27. | NW_001092731 | AAGA | 3 | 30797 | 30808 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 28. | NW_001092731 | AAAG | 3 | 32030 | 32042 | 13 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 29. | NW_001092731 | AAGA | 3 | 34025 | 34035 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | 85114021 |
| 30. | NW_001092731 | CAAC | 3 | 36607 | 36617 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 31. | NW_001092731 | GTCT | 3 | 41016 | 41028 | 13 | 0.00% | 50.00% | 25.00% | 25.00% | 85114034 |
| 32. | NW_001092731 | GCGA | 3 | 42887 | 42898 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85114038 |
| 33. | NW_001092731 | GGTT | 3 | 44025 | 44036 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 34. | NW_001092731 | GAAG | 3 | 44070 | 44080 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 35. | NW_001092731 | CATC | 3 | 44131 | 44142 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 36. | NW_001092731 | TAGG | 4 | 44900 | 44915 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 37. | NW_001092731 | TTCC | 6 | 45169 | 45192 | 24 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 38. | NW_001092731 | GATG | 3 | 45303 | 45314 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 39. | NW_001092731 | TGCT | 3 | 46687 | 46699 | 13 | 0.00% | 50.00% | 25.00% | 25.00% | 85114043 |
| 40. | NW_001092731 | TACC | 3 | 48713 | 48724 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 41. | NW_001092731 | TACA | 4 | 49687 | 49701 | 15 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 42. | NW_001092731 | GAGG | 4 | 53654 | 53669 | 16 | 25.00% | 0.00% | 75.00% | 0.00% | 85114055 |
| 43. | NW_001092731 | TGTT | 10 | 53787 | 53825 | 39 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 44. | NW_001092731 | TCTT | 4 | 53865 | 53880 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 45. | NW_001092731 | TTGG | 3 | 54803 | 54814 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 46. | NW_001092731 | AACT | 3 | 55115 | 55125 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 47. | NW_001092731 | GAAA | 3 | 55463 | 55473 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 48. | NW_001092731 | AATG | 3 | 55821 | 55832 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 49. | NW_001092731 | GCTT | 6 | 59633 | 59657 | 25 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 50. | NW_001092731 | GTAG | 3 | 65299 | 65310 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 51. | NW_001092731 | ACCT | 3 | 65940 | 65951 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 52. | NW_001092731 | GCGG | 3 | 66059 | 66070 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 53. | NW_001092731 | GGAC | 3 | 66808 | 66822 | 15 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 54. | NW_001092731 | CCTT | 4 | 67086 | 67101 | 16 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 55. | NW_001092731 | GGCG | 5 | 68776 | 68795 | 20 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 56. | NW_001092731 | GTAA | 5 | 70051 | 70070 | 20 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 57. | NW_001092731 | AGTA | 3 | 70103 | 70114 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 58. | NW_001092731 | AGAA | 6 | 70249 | 70272 | 24 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 59. | NW_001092731 | CGTG | 3 | 70335 | 70346 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 60. | NW_001092731 | ATGG | 6 | 70398 | 70422 | 25 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 61. | NW_001092731 | TACC | 4 | 70449 | 70464 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 62. | NW_001092731 | GCAA | 3 | 70501 | 70512 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 63. | NW_001092731 | CAGG | 3 | 71179 | 71190 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 64. | NW_001092731 | TTGG | 3 | 71471 | 71482 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 65. | NW_001092731 | AAAG | 3 | 72148 | 72159 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 85114071 |
| 66. | NW_001092731 | TAGG | 7 | 72193 | 72220 | 28 | 25.00% | 25.00% | 50.00% | 0.00% | 85114071 |
| 67. | NW_001092731 | TCCA | 3 | 75368 | 75378 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 68. | NW_001092731 | GCTT | 3 | 76319 | 76329 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85114075 |
| 69. | NW_001092731 | GATG | 3 | 76563 | 76573 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 70. | NW_001092731 | TACA | 3 | 78112 | 78122 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 71. | NW_001092731 | CTAC | 4 | 78192 | 78208 | 17 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 72. | NW_001092731 | AGCG | 3 | 78367 | 78378 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 73. | NW_001092731 | CACT | 3 | 82639 | 82650 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 74. | NW_001092731 | CAAA | 3 | 83368 | 83379 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 75. | NW_001092731 | TCCC | 3 | 83825 | 83835 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 76. | NW_001092731 | GGTA | 3 | 84583 | 84593 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 77. | NW_001092731 | GCTT | 3 | 88375 | 88385 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 78. | NW_001092731 | GTAG | 5 | 89948 | 89967 | 20 | 25.00% | 25.00% | 50.00% | 0.00% | 85114087 |
| 79. | NW_001092731 | GCGA | 3 | 89985 | 89996 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85114087 |
| 80. | NW_001092731 | TGTT | 3 | 90139 | 90149 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | 85114087 |
| 81. | NW_001092731 | GATT | 4 | 90154 | 90169 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 82. | NW_001092731 | GCTC | 3 | 91285 | 91295 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85114092 |
| 83. | NW_001092731 | TTGC | 3 | 91929 | 91940 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 85114092 |
| 84. | NW_001092731 | CCGT | 3 | 97920 | 97932 | 13 | 0.00% | 25.00% | 25.00% | 50.00% | 85114101 |
| 85. | NW_001092731 | AGGT | 4 | 99898 | 99912 | 15 | 25.00% | 25.00% | 50.00% | 0.00% | 85114105 |
| 86. | NW_001092731 | ACGG | 3 | 100338 | 100348 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 87. | NW_001092731 | CCAA | 3 | 100871 | 100881 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 88. | NW_001092731 | GTCA | 3 | 101064 | 101075 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 89. | NW_001092731 | ATCC | 3 | 104596 | 104606 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 90. | NW_001092731 | CCTC | 3 | 104835 | 104846 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85114113 |
| 91. | NW_001092731 | GGAG | 3 | 105627 | 105639 | 13 | 25.00% | 0.00% | 75.00% | 0.00% | 85114113 |
| 92. | NW_001092731 | TGGT | 3 | 106346 | 106357 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |