List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092628 | TAAA | 3 | 916 | 926 | 11 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092628 | CTGG | 3 | 4240 | 4251 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 3. | NW_001092628 | GGGA | 3 | 6572 | 6582 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | 85110750 |
| 4. | NW_001092628 | CGGG | 4 | 14291 | 14306 | 16 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 5. | NW_001092628 | CGAA | 3 | 14407 | 14419 | 13 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 6. | NW_001092628 | CTGA | 5 | 14440 | 14460 | 21 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 7. | NW_001092628 | TCAT | 4 | 19880 | 19895 | 16 | 25.00% | 50.00% | 0.00% | 25.00% | 85110756 |
| 8. | NW_001092628 | AACT | 4 | 20017 | 20032 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | 85110756 |
| 9. | NW_001092628 | TACC | 3 | 23007 | 23018 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 10. | NW_001092628 | CATA | 3 | 23133 | 23143 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 11. | NW_001092628 | CGTC | 3 | 27873 | 27883 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85110762 |
| 12. | NW_001092628 | AAAG | 4 | 27947 | 27962 | 16 | 75.00% | 0.00% | 25.00% | 0.00% | 85110762 |
| 13. | NW_001092628 | GGTG | 3 | 28417 | 28428 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | 85110762 |
| 14. | NW_001092628 | AGCG | 3 | 37179 | 37190 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 15. | NW_001092628 | GGTA | 3 | 37209 | 37220 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 16. | NW_001092628 | TGTA | 3 | 37478 | 37488 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 17. | NW_001092628 | GGGT | 3 | 39487 | 39497 | 11 | 0.00% | 25.00% | 75.00% | 0.00% | 85110770 |
| 18. | NW_001092628 | TCCG | 3 | 42254 | 42265 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85110772 |
| 19. | NW_001092628 | GCCT | 3 | 47600 | 47610 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85110776 |
| 20. | NW_001092628 | CTGG | 3 | 49378 | 49388 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 21. | NW_001092628 | TAGT | 3 | 50109 | 50120 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 22. | NW_001092628 | CTAT | 3 | 53071 | 53081 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 23. | NW_001092628 | TGGT | 3 | 57124 | 57135 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | 85110784 |
| 24. | NW_001092628 | CAAA | 3 | 57445 | 57456 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | 85110784 |
| 25. | NW_001092628 | AGTT | 4 | 64462 | 64477 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 26. | NW_001092628 | GCAA | 3 | 68285 | 68295 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 27. | NW_001092628 | TCCG | 3 | 71276 | 71287 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85110794 |
| 28. | NW_001092628 | AGCC | 3 | 71727 | 71737 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 29. | NW_001092628 | AGCC | 4 | 73402 | 73417 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 30. | NW_001092628 | CATC | 3 | 75129 | 75140 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 31. | NW_001092628 | GTAA | 4 | 76932 | 76947 | 16 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 32. | NW_001092628 | GGGT | 3 | 78134 | 78145 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | 85110796 |
| 33. | NW_001092628 | GGTT | 3 | 79088 | 79099 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 34. | NW_001092628 | GTGA | 3 | 80574 | 80584 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 35. | NW_001092628 | GGAA | 3 | 80845 | 80856 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 36. | NW_001092628 | CTAC | 3 | 84983 | 84993 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85110804 |
| 37. | NW_001092628 | CGAA | 3 | 88574 | 88585 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 38. | NW_001092628 | GGCG | 3 | 97419 | 97430 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 39. | NW_001092628 | TTGT | 3 | 104492 | 104503 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 40. | NW_001092628 | AGCG | 3 | 105959 | 105969 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85110824 |
| 41. | NW_001092628 | GTAG | 3 | 107925 | 107936 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 42. | NW_001092628 | AATG | 3 | 108022 | 108033 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 43. | NW_001092628 | TGCC | 3 | 108155 | 108166 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 44. | NW_001092628 | TAGG | 3 | 108476 | 108487 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 45. | NW_001092628 | ACAT | 4 | 110082 | 110097 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | 85110826 |
| 46. | NW_001092628 | CACC | 3 | 110311 | 110322 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | 85110826 |
| 47. | NW_001092628 | CTTG | 3 | 110848 | 110859 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 85110828 |
| 48. | NW_001092628 | GGTA | 4 | 112950 | 112965 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 49. | NW_001092628 | TCGA | 3 | 113067 | 113077 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 50. | NW_001092628 | CGGT | 3 | 113971 | 113982 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85110830 |
| 51. | NW_001092628 | TCAA | 3 | 115858 | 115870 | 13 | 50.00% | 25.00% | 0.00% | 25.00% | 85110830 |
| 52. | NW_001092628 | ACCA | 3 | 117585 | 117596 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | 85110832 |
| 53. | NW_001092628 | ATCT | 4 | 117651 | 117666 | 16 | 25.00% | 50.00% | 0.00% | 25.00% | 85110832 |
| 54. | NW_001092628 | CTAC | 3 | 118416 | 118427 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 85110834 |
| 55. | NW_001092628 | AGGG | 3 | 120432 | 120443 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 85110836 |
| 56. | NW_001092628 | TACT | 3 | 126496 | 126507 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | 85110846 |
| 57. | NW_001092628 | CATT | 3 | 126811 | 126822 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | 85110846 |
| 58. | NW_001092628 | CATC | 3 | 131385 | 131395 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85110850 |
| 59. | NW_001092628 | GTCG | 3 | 142795 | 142806 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 60. | NW_001092628 | ATAC | 3 | 142851 | 142862 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 61. | NW_001092628 | ACTG | 4 | 142987 | 143002 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 62. | NW_001092628 | TACC | 3 | 144081 | 144092 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 63. | NW_001092628 | GTCT | 4 | 145551 | 145565 | 15 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 64. | NW_001092628 | GGTC | 3 | 145916 | 145927 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 65. | NW_001092628 | GCAA | 3 | 146262 | 146272 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 66. | NW_001092628 | GTTT | 3 | 153480 | 153490 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 67. | NW_001092628 | TGTA | 3 | 153602 | 153613 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 68. | NW_001092628 | CGAG | 4 | 158315 | 158329 | 15 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 69. | NW_001092628 | GCTT | 3 | 161835 | 161845 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85110874 |
| 70. | NW_001092628 | GGTA | 3 | 163123 | 163134 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 71. | NW_001092628 | CGAA | 3 | 163939 | 163950 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85110876 |
| 72. | NW_001092628 | CCTA | 3 | 164023 | 164034 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 85110876 |
| 73. | NW_001092628 | GTTT | 3 | 164274 | 164289 | 16 | 0.00% | 75.00% | 25.00% | 0.00% | 85110876 |
| 74. | NW_001092628 | GAAA | 3 | 164955 | 164966 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 75. | NW_001092628 | GGAT | 3 | 168184 | 168195 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 76. | NW_001092628 | GGGC | 3 | 170033 | 170045 | 13 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 77. | NW_001092628 | CGGA | 3 | 170482 | 170492 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 78. | NW_001092628 | TGTC | 3 | 172336 | 172347 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 79. | NW_001092628 | CCGC | 4 | 172350 | 172365 | 16 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 80. | NW_001092628 | AACA | 8 | 175915 | 175945 | 31 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 81. | NW_001092628 | CGCC | 3 | 180426 | 180437 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 82. | NW_001092628 | AGAC | 5 | 180440 | 180458 | 19 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 83. | NW_001092628 | ACGT | 3 | 182073 | 182083 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 84. | NW_001092628 | CATA | 3 | 182937 | 182949 | 13 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 85. | NW_001092628 | CGGG | 3 | 184115 | 184127 | 13 | 0.00% | 0.00% | 75.00% | 25.00% | 85110884 |
| 86. | NW_001092628 | ATGT | 3 | 185581 | 185592 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 85110886 |
| 87. | NW_001092628 | GGAA | 3 | 191605 | 191617 | 13 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 88. | NW_001092628 | GCTC | 3 | 191806 | 191816 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 89. | NW_001092628 | GATG | 6 | 191848 | 191871 | 24 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |