List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092623 | AGA | 5 | 250 | 264 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 2. | NW_001092623 | AAG | 7 | 1464 | 1483 | 20 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 3. | NW_001092623 | GCT | 4 | 2331 | 2343 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 4. | NW_001092623 | CGT | 6 | 2531 | 2548 | 18 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 5. | NW_001092623 | TTC | 4 | 2791 | 2801 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 6. | NW_001092623 | GTA | 5 | 3751 | 3764 | 14 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 7. | NW_001092623 | TGA | 7 | 6787 | 6806 | 20 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 8. | NW_001092623 | CTC | 4 | 7081 | 7093 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85110403 |
| 9. | NW_001092623 | GGA | 4 | 8692 | 8704 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85110405 |
| 10. | NW_001092623 | TCC | 4 | 9275 | 9286 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85110405 |
| 11. | NW_001092623 | CCT | 4 | 11431 | 11441 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85110407 |
| 12. | NW_001092623 | TCA | 4 | 12051 | 12062 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85110407 |
| 13. | NW_001092623 | ATT | 4 | 12664 | 12675 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 14. | NW_001092623 | GTG | 4 | 13678 | 13688 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85110409 |
| 15. | NW_001092623 | TCA | 4 | 17658 | 17670 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 16. | NW_001092623 | GCT | 4 | 17671 | 17682 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 17. | NW_001092623 | CAG | 4 | 18920 | 18931 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 18. | NW_001092623 | TTG | 5 | 21848 | 21862 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 19. | NW_001092623 | GAC | 5 | 22412 | 22426 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85110417 |
| 20. | NW_001092623 | CGA | 4 | 22435 | 22446 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85110417 |
| 21. | NW_001092623 | AGT | 4 | 24336 | 24346 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85110417 |
| 22. | NW_001092623 | AAG | 4 | 24995 | 25006 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85110417 |
| 23. | NW_001092623 | GCA | 4 | 25092 | 25102 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85110417 |
| 24. | NW_001092623 | ATC | 4 | 26721 | 26732 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85110417 |
| 25. | NW_001092623 | TCG | 4 | 28134 | 28145 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85110417 |
| 26. | NW_001092623 | AGG | 4 | 28326 | 28338 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85110417 |
| 27. | NW_001092623 | GTG | 4 | 28600 | 28610 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85110417 |
| 28. | NW_001092623 | TGG | 4 | 28803 | 28814 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85110417 |
| 29. | NW_001092623 | CAG | 5 | 29114 | 29127 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | 85110417 |
| 30. | NW_001092623 | GAG | 4 | 29291 | 29301 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85110417 |
| 31. | NW_001092623 | ATC | 4 | 31650 | 31660 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85110419 |
| 32. | NW_001092623 | ACA | 5 | 31716 | 31730 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85110419 |
| 33. | NW_001092623 | GGC | 6 | 32935 | 32952 | 18 | 0.00% | 0.00% | 66.67% | 33.33% | 85110419 |
| 34. | NW_001092623 | AGG | 5 | 32961 | 32975 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85110419 |
| 35. | NW_001092623 | GTA | 4 | 33353 | 33363 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 36. | NW_001092623 | TGT | 5 | 34259 | 34273 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 37. | NW_001092623 | CTG | 10 | 35126 | 35157 | 32 | 0.00% | 33.33% | 33.33% | 33.33% | 85110421 |
| 38. | NW_001092623 | TGG | 4 | 35641 | 35652 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85110421 |
| 39. | NW_001092623 | CGG | 6 | 35650 | 35666 | 17 | 0.00% | 0.00% | 66.67% | 33.33% | 85110421 |
| 40. | NW_001092623 | TGT | 14 | 35715 | 35756 | 42 | 0.00% | 66.67% | 33.33% | 0.00% | 85110421 |
| 41. | NW_001092623 | CAA | 5 | 37861 | 37875 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85110423 |
| 42. | NW_001092623 | ATT | 4 | 39723 | 39734 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | 85110427 |
| 43. | NW_001092623 | CCA | 4 | 39813 | 39823 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85110427 |
| 44. | NW_001092623 | TCC | 5 | 40463 | 40477 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85110427 |
| 45. | NW_001092623 | GTG | 4 | 40839 | 40850 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85110427 |
| 46. | NW_001092623 | TTG | 4 | 41322 | 41333 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85110429 |
| 47. | NW_001092623 | TTG | 4 | 43461 | 43472 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85110433 |
| 48. | NW_001092623 | CAA | 6 | 43711 | 43728 | 18 | 66.67% | 0.00% | 0.00% | 33.33% | 85110433 |
| 49. | NW_001092623 | TCC | 4 | 44213 | 44224 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85110433 |
| 50. | NW_001092623 | GGT | 4 | 44459 | 44469 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85110433 |
| 51. | NW_001092623 | ACA | 84 | 44622 | 44873 | 252 | 66.67% | 0.00% | 0.00% | 33.33% | 85110433 |
| 52. | NW_001092623 | GCA | 5 | 45880 | 45894 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85110435 |
| 53. | NW_001092623 | GCG | 5 | 46030 | 46044 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85110435 |
| 54. | NW_001092623 | ACC | 4 | 46263 | 46274 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85110435 |
| 55. | NW_001092623 | AGA | 4 | 46368 | 46379 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85110435 |
| 56. | NW_001092623 | CAA | 4 | 46427 | 46438 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85110435 |
| 57. | NW_001092623 | GGC | 5 | 46446 | 46460 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85110435 |
| 58. | NW_001092623 | GCC | 4 | 48479 | 48490 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85110439 |
| 59. | NW_001092623 | CTT | 5 | 48582 | 48596 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85110439 |
| 60. | NW_001092623 | GCT | 9 | 49001 | 49027 | 27 | 0.00% | 33.33% | 33.33% | 33.33% | 85110439 |
| 61. | NW_001092623 | GGC | 4 | 49033 | 49044 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85110439 |
| 62. | NW_001092623 | GCA | 7 | 51219 | 51239 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85110441 |
| 63. | NW_001092623 | GGC | 4 | 51608 | 51619 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85110441 |
| 64. | NW_001092623 | TTC | 4 | 52995 | 53005 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85110443 |
| 65. | NW_001092623 | TCT | 4 | 53099 | 53110 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85110443 |
| 66. | NW_001092623 | CTG | 4 | 53704 | 53715 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85110445 |
| 67. | NW_001092623 | GCA | 4 | 54027 | 54038 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85110445 |
| 68. | NW_001092623 | GCT | 4 | 54033 | 54044 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85110445 |
| 69. | NW_001092623 | TCA | 4 | 54431 | 54442 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 70. | NW_001092623 | GTG | 4 | 57253 | 57264 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85110451 |
| 71. | NW_001092623 | AGG | 4 | 57273 | 57284 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85110451 |
| 72. | NW_001092623 | TGC | 4 | 57742 | 57753 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85110451 |
| 73. | NW_001092623 | TGC | 4 | 60088 | 60098 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85110451 |
| 74. | NW_001092623 | TGC | 5 | 60310 | 60323 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | 85110451 |
| 75. | NW_001092623 | AGG | 4 | 64191 | 64202 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85110455 |
| 76. | NW_001092623 | ACC | 10 | 64505 | 64534 | 30 | 33.33% | 0.00% | 0.00% | 66.67% | 85110455 |
| 77. | NW_001092623 | TCC | 4 | 66534 | 66545 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85110457 |
| 78. | NW_001092623 | CAA | 4 | 66790 | 66801 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85110457 |
| 79. | NW_001092623 | ACA | 4 | 68125 | 68135 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 80. | NW_001092623 | ACA | 4 | 69669 | 69680 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85110459 |
| 81. | NW_001092623 | CAG | 4 | 70163 | 70174 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85110459 |
| 82. | NW_001092623 | CAA | 5 | 72196 | 72211 | 16 | 66.67% | 0.00% | 0.00% | 33.33% | 85110461 |
| 83. | NW_001092623 | GTC | 5 | 73235 | 73249 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 84. | NW_001092623 | AAC | 4 | 73987 | 73998 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 85. | NW_001092623 | AGA | 4 | 77958 | 77969 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85110467 |
| 86. | NW_001092623 | CCG | 4 | 81545 | 81557 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | 85110469 |
| 87. | NW_001092623 | ACA | 4 | 82161 | 82172 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 88. | NW_001092623 | TAT | 4 | 83640 | 83651 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 89. | NW_001092623 | ACT | 4 | 84026 | 84037 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 90. | NW_001092623 | TAT | 4 | 84678 | 84690 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 91. | NW_001092623 | GAG | 4 | 85292 | 85302 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 92. | NW_001092623 | TAA | 4 | 85344 | 85356 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 93. | NW_001092623 | TAA | 4 | 85365 | 85375 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 94. | NW_001092623 | TAA | 4 | 85601 | 85612 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 95. | NW_001092623 | TAT | 4 | 86713 | 86724 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |