List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092594 | CGGC | 3 | 1058 | 1069 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | Non-Coding |
| 2. | NW_001092594 | GCAA | 3 | 10807 | 10819 | 13 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 3. | NW_001092594 | TACC | 4 | 10888 | 10904 | 17 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 4. | NW_001092594 | AGGC | 3 | 11020 | 11031 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 5. | NW_001092594 | GGTA | 3 | 11297 | 11309 | 13 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 6. | NW_001092594 | CACT | 3 | 12156 | 12167 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 7. | NW_001092594 | GCGG | 3 | 15897 | 15908 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 8. | NW_001092594 | TGTT | 3 | 16333 | 16344 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 9. | NW_001092594 | GTCT | 3 | 18746 | 18757 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 10. | NW_001092594 | GTAC | 3 | 20561 | 20571 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85109829 |
| 11. | NW_001092594 | TTCC | 3 | 21004 | 21015 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 12. | NW_001092594 | CAGT | 3 | 21688 | 21698 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 13. | NW_001092594 | CCAT | 3 | 22254 | 22266 | 13 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 14. | NW_001092594 | AGTG | 5 | 23662 | 23682 | 21 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 15. | NW_001092594 | ACAG | 3 | 23683 | 23694 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 16. | NW_001092594 | TACA | 6 | 25526 | 25549 | 24 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 17. | NW_001092594 | CTGC | 3 | 25864 | 25875 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 18. | NW_001092594 | CCCT | 4 | 30115 | 30129 | 15 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 19. | NW_001092594 | CATT | 3 | 32901 | 32913 | 13 | 25.00% | 50.00% | 0.00% | 25.00% | 85109833 |
| 20. | NW_001092594 | CCTG | 3 | 33037 | 33048 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85109833 |
| 21. | NW_001092594 | TGGG | 3 | 33489 | 33500 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | 85109833 |
| 22. | NW_001092594 | AAAC | 7 | 33561 | 33588 | 28 | 75.00% | 0.00% | 0.00% | 25.00% | 85109833 |
| 23. | NW_001092594 | GAAA | 3 | 34028 | 34039 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 85109833 |
| 24. | NW_001092594 | CGTC | 3 | 34493 | 34504 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 25. | NW_001092594 | GGCC | 3 | 37473 | 37484 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | Non-Coding |
| 26. | NW_001092594 | GCCA | 3 | 37983 | 37993 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 27. | NW_001092594 | GCAG | 3 | 38392 | 38402 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 28. | NW_001092594 | CAGG | 3 | 39862 | 39873 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 29. | NW_001092594 | CATT | 3 | 41722 | 41733 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 30. | NW_001092594 | GATT | 3 | 43022 | 43032 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 31. | NW_001092594 | CGCC | 3 | 45559 | 45570 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 32. | NW_001092594 | CTTA | 3 | 47908 | 47918 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 33. | NW_001092594 | GATA | 3 | 48250 | 48260 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 34. | NW_001092594 | GGTC | 8 | 54247 | 54281 | 35 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 35. | NW_001092594 | GCAG | 5 | 54290 | 54309 | 20 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 36. | NW_001092594 | CGGT | 4 | 54447 | 54462 | 16 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 37. | NW_001092594 | TGGT | 3 | 54463 | 54474 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 38. | NW_001092594 | TTTC | 3 | 55141 | 55152 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 39. | NW_001092594 | TGCG | 3 | 55401 | 55412 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 40. | NW_001092594 | GACA | 4 | 58412 | 58426 | 15 | 50.00% | 0.00% | 25.00% | 25.00% | 85109845 |
| 41. | NW_001092594 | TTTC | 3 | 59799 | 59810 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 42. | NW_001092594 | CACG | 3 | 59855 | 59865 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 43. | NW_001092594 | ATTC | 3 | 59868 | 59879 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 44. | NW_001092594 | ACGA | 3 | 61074 | 61084 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85109847 |
| 45. | NW_001092594 | AAAG | 3 | 64034 | 64044 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | 85109851 |
| 46. | NW_001092594 | TCCC | 4 | 64349 | 64364 | 16 | 0.00% | 25.00% | 0.00% | 75.00% | 85109851 |
| 47. | NW_001092594 | TGGC | 4 | 64660 | 64674 | 15 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 48. | NW_001092594 | CCTT | 3 | 69421 | 69432 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 85109855 |
| 49. | NW_001092594 | CGTG | 3 | 70052 | 70063 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85109855 |
| 50. | NW_001092594 | GACG | 3 | 75640 | 75650 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 51. | NW_001092594 | TGGA | 3 | 77961 | 77972 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 52. | NW_001092594 | CTGC | 3 | 77987 | 77997 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 53. | NW_001092594 | CCAA | 3 | 78352 | 78362 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 54. | NW_001092594 | AGGT | 3 | 78528 | 78539 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 55. | NW_001092594 | GATT | 3 | 81428 | 81439 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 85109861 |
| 56. | NW_001092594 | GGCA | 3 | 84373 | 84383 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85109861 |
| 57. | NW_001092594 | GCAG | 3 | 84443 | 84455 | 13 | 25.00% | 0.00% | 50.00% | 25.00% | 85109861 |
| 58. | NW_001092594 | TCAA | 3 | 88777 | 88788 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 59. | NW_001092594 | TCCT | 3 | 90026 | 90038 | 13 | 0.00% | 50.00% | 0.00% | 50.00% | 85109865 |
| 60. | NW_001092594 | CATG | 3 | 95194 | 95205 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85109867 |
| 61. | NW_001092594 | AGCT | 3 | 97969 | 97981 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 62. | NW_001092594 | TACC | 4 | 98393 | 98408 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 63. | NW_001092594 | CACT | 4 | 100771 | 100785 | 15 | 25.00% | 25.00% | 0.00% | 50.00% | 85109869 |
| 64. | NW_001092594 | GTAC | 3 | 102232 | 102243 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 65. | NW_001092594 | CAGG | 3 | 102636 | 102647 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 66. | NW_001092594 | CCAC | 3 | 102823 | 102834 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 67. | NW_001092594 | ACCA | 3 | 107613 | 107623 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | 85109871 |
| 68. | NW_001092594 | GGTC | 3 | 107744 | 107754 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85109871 |
| 69. | NW_001092594 | AGGG | 3 | 110007 | 110017 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 70. | NW_001092594 | GCAG | 3 | 110282 | 110293 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 71. | NW_001092594 | CAAG | 4 | 110432 | 110447 | 16 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 72. | NW_001092594 | TGAA | 3 | 110786 | 110797 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 73. | NW_001092594 | TCAT | 3 | 111878 | 111889 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 74. | NW_001092594 | ACTC | 4 | 112218 | 112233 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 75. | NW_001092594 | GCGA | 3 | 114071 | 114081 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85109873 |
| 76. | NW_001092594 | TGGA | 3 | 116961 | 116971 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85109875 |
| 77. | NW_001092594 | GCTG | 3 | 118769 | 118779 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85109875 |
| 78. | NW_001092594 | GAGC | 3 | 120743 | 120753 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85109877 |
| 79. | NW_001092594 | AGGT | 3 | 124784 | 124794 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85109879 |
| 80. | NW_001092594 | TGGC | 3 | 126753 | 126763 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85109879 |
| 81. | NW_001092594 | GCTT | 3 | 127811 | 127821 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 82. | NW_001092594 | AACC | 3 | 128582 | 128592 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | 85109881 |
| 83. | NW_001092594 | ACAA | 3 | 129651 | 129662 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |