List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092593 | CTGC | 4 | 345 | 360 | 16 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 2. | NW_001092593 | TGCC | 3 | 8498 | 8509 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85109758 |
| 3. | NW_001092593 | TGCT | 3 | 9186 | 9197 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 85109758 |
| 4. | NW_001092593 | TTTC | 3 | 9984 | 9994 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 5. | NW_001092593 | GAAA | 3 | 10852 | 10862 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 6. | NW_001092593 | ACGG | 3 | 13842 | 13853 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85109760 |
| 7. | NW_001092593 | TACC | 4 | 15776 | 15791 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 8. | NW_001092593 | GGCT | 3 | 21106 | 21117 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 9. | NW_001092593 | TAGG | 4 | 25988 | 26003 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 10. | NW_001092593 | TTTC | 3 | 26862 | 26873 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 11. | NW_001092593 | TATC | 3 | 28013 | 28024 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 12. | NW_001092593 | TGAT | 3 | 28355 | 28366 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 13. | NW_001092593 | TTGC | 3 | 28393 | 28403 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 14. | NW_001092593 | GCTT | 3 | 29333 | 29344 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 85109770 |
| 15. | NW_001092593 | GCAA | 3 | 29518 | 29528 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85109770 |
| 16. | NW_001092593 | TACA | 3 | 31589 | 31599 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 17. | NW_001092593 | TACA | 3 | 31643 | 31653 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 18. | NW_001092593 | TTTG | 3 | 33159 | 33170 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 19. | NW_001092593 | TCGC | 4 | 34005 | 34019 | 15 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 20. | NW_001092593 | TCCA | 3 | 34448 | 34458 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 21. | NW_001092593 | GACG | 3 | 35137 | 35147 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 22. | NW_001092593 | AGTC | 5 | 35297 | 35316 | 20 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 23. | NW_001092593 | TCTG | 3 | 35490 | 35501 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 24. | NW_001092593 | CCAT | 3 | 36298 | 36309 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 25. | NW_001092593 | CAAT | 6 | 36439 | 36463 | 25 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 26. | NW_001092593 | TTTC | 3 | 36619 | 36630 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 27. | NW_001092593 | GCTC | 3 | 38809 | 38820 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85109774 |
| 28. | NW_001092593 | AAAC | 4 | 39841 | 39856 | 16 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 29. | NW_001092593 | TACA | 3 | 40442 | 40453 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 30. | NW_001092593 | TGCT | 4 | 40980 | 40994 | 15 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 31. | NW_001092593 | TGGG | 3 | 52991 | 53001 | 11 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 32. | NW_001092593 | GTTT | 4 | 55516 | 55531 | 16 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 33. | NW_001092593 | TGGT | 3 | 58824 | 58835 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 34. | NW_001092593 | AAGC | 3 | 59086 | 59097 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 35. | NW_001092593 | TCAG | 3 | 60114 | 60124 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85109786 |
| 36. | NW_001092593 | TCAA | 3 | 60276 | 60286 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | 85109786 |
| 37. | NW_001092593 | GGTT | 3 | 61152 | 61163 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | 85109786 |
| 38. | NW_001092593 | GCAG | 3 | 61341 | 61351 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 39. | NW_001092593 | ATCC | 4 | 61621 | 61636 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 40. | NW_001092593 | GTCT | 3 | 63211 | 63221 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 41. | NW_001092593 | TTCC | 3 | 64327 | 64338 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 42. | NW_001092593 | TTTG | 4 | 66301 | 66316 | 16 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 43. | NW_001092593 | TACG | 3 | 70908 | 70919 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 44. | NW_001092593 | ACTC | 3 | 73909 | 73919 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 45. | NW_001092593 | GAAA | 3 | 78282 | 78292 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 46. | NW_001092593 | CAAG | 3 | 81444 | 81454 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85109800 |
| 47. | NW_001092593 | TCTT | 3 | 89479 | 89489 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 48. | NW_001092593 | TGCC | 3 | 89730 | 89740 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85109808 |
| 49. | NW_001092593 | GTAG | 4 | 95376 | 95391 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 50. | NW_001092593 | AAGA | 3 | 99144 | 99154 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 51. | NW_001092593 | TTCA | 4 | 99494 | 99508 | 15 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 52. | NW_001092593 | GATG | 3 | 100096 | 100106 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85109812 |
| 53. | NW_001092593 | GTAG | 3 | 104471 | 104482 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 54. | NW_001092593 | TAGA | 3 | 104923 | 104934 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 55. | NW_001092593 | TTTA | 3 | 107005 | 107016 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 56. | NW_001092593 | GCAG | 4 | 107363 | 107378 | 16 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 57. | NW_001092593 | AGCC | 3 | 108246 | 108256 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 58. | NW_001092593 | TGCC | 3 | 108510 | 108521 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 59. | NW_001092593 | GCGG | 3 | 112134 | 112145 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | 85109814 |
| 60. | NW_001092593 | TGCC | 3 | 114038 | 114049 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |