List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092592 | TAA | 4 | 1082 | 1092 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092592 | TTA | 4 | 1262 | 1273 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092592 | ATT | 4 | 2465 | 2476 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 4. | NW_001092592 | TAT | 4 | 2552 | 2563 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 5. | NW_001092592 | ATA | 4 | 2645 | 2655 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 6. | NW_001092592 | ACT | 4 | 4109 | 4120 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 7. | NW_001092592 | TTC | 4 | 4337 | 4348 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 8. | NW_001092592 | ACC | 4 | 4933 | 4944 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 9. | NW_001092592 | CTA | 4 | 7640 | 7650 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 10. | NW_001092592 | CGC | 4 | 7859 | 7870 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109701 |
| 11. | NW_001092592 | CCA | 7 | 7885 | 7905 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | 85109701 |
| 12. | NW_001092592 | CGG | 4 | 10400 | 10412 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 13. | NW_001092592 | GAA | 4 | 10594 | 10605 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 14. | NW_001092592 | TGA | 4 | 11281 | 11291 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 15. | NW_001092592 | TGG | 4 | 12323 | 12335 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 16. | NW_001092592 | CCA | 4 | 14703 | 14714 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 17. | NW_001092592 | TGC | 7 | 14788 | 14808 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 18. | NW_001092592 | GCA | 4 | 15817 | 15828 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 19. | NW_001092592 | TGT | 4 | 16123 | 16135 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | 85109705 |
| 20. | NW_001092592 | CGT | 4 | 16391 | 16401 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85109705 |
| 21. | NW_001092592 | CGC | 4 | 16928 | 16938 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85109705 |
| 22. | NW_001092592 | CTT | 4 | 17211 | 17221 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85109705 |
| 23. | NW_001092592 | ACA | 5 | 17414 | 17428 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85109705 |
| 24. | NW_001092592 | CAG | 8 | 17514 | 17537 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | 85109705 |
| 25. | NW_001092592 | ACA | 5 | 17558 | 17571 | 14 | 66.67% | 0.00% | 0.00% | 33.33% | 85109705 |
| 26. | NW_001092592 | CAA | 4 | 17715 | 17726 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85109705 |
| 27. | NW_001092592 | GCA | 4 | 17750 | 17761 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109705 |
| 28. | NW_001092592 | CAG | 4 | 17853 | 17864 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109705 |
| 29. | NW_001092592 | CAA | 5 | 17862 | 17876 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85109705 |
| 30. | NW_001092592 | CAG | 4 | 18093 | 18104 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109705 |
| 31. | NW_001092592 | GAA | 4 | 19208 | 19220 | 13 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 32. | NW_001092592 | TGT | 5 | 19427 | 19440 | 14 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 33. | NW_001092592 | ATT | 4 | 20183 | 20195 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 34. | NW_001092592 | GAT | 4 | 20464 | 20475 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 35. | NW_001092592 | ATG | 4 | 20492 | 20503 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 36. | NW_001092592 | TGC | 4 | 21409 | 21420 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 37. | NW_001092592 | TCA | 4 | 21779 | 21790 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 38. | NW_001092592 | GCT | 4 | 22798 | 22809 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 39. | NW_001092592 | CAA | 4 | 23592 | 23603 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 40. | NW_001092592 | GAC | 5 | 23623 | 23636 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 41. | NW_001092592 | CAC | 4 | 24264 | 24275 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109707 |
| 42. | NW_001092592 | GCG | 4 | 24363 | 24374 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85109707 |
| 43. | NW_001092592 | ACA | 4 | 24561 | 24572 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85109707 |
| 44. | NW_001092592 | CGG | 4 | 24997 | 25007 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85109707 |
| 45. | NW_001092592 | TCG | 4 | 25421 | 25432 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109707 |
| 46. | NW_001092592 | GTG | 4 | 33122 | 33133 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109713 |
| 47. | NW_001092592 | TCC | 4 | 33864 | 33875 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109713 |
| 48. | NW_001092592 | GGT | 5 | 34167 | 34180 | 14 | 0.00% | 33.33% | 66.67% | 0.00% | 85109713 |
| 49. | NW_001092592 | TGG | 7 | 34198 | 34218 | 21 | 0.00% | 33.33% | 66.67% | 0.00% | 85109713 |
| 50. | NW_001092592 | CGG | 4 | 34425 | 34436 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 51. | NW_001092592 | GTG | 5 | 34441 | 34456 | 16 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 52. | NW_001092592 | TCA | 4 | 34760 | 34770 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 53. | NW_001092592 | CTT | 4 | 37986 | 37996 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 54. | NW_001092592 | CAC | 11 | 38242 | 38274 | 33 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 55. | NW_001092592 | CGG | 7 | 38946 | 38966 | 21 | 0.00% | 0.00% | 66.67% | 33.33% | 85109717 |
| 56. | NW_001092592 | AGA | 4 | 38991 | 39001 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85109717 |
| 57. | NW_001092592 | GAG | 5 | 39790 | 39803 | 14 | 33.33% | 0.00% | 66.67% | 0.00% | 85109717 |
| 58. | NW_001092592 | CCT | 4 | 39863 | 39874 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109717 |
| 59. | NW_001092592 | ACC | 4 | 39947 | 39958 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109717 |
| 60. | NW_001092592 | GAC | 4 | 40079 | 40090 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109717 |
| 61. | NW_001092592 | CGG | 7 | 40183 | 40203 | 21 | 0.00% | 0.00% | 66.67% | 33.33% | 85109717 |
| 62. | NW_001092592 | AGC | 4 | 40257 | 40268 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109717 |
| 63. | NW_001092592 | TTG | 4 | 40688 | 40699 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 64. | NW_001092592 | GCT | 4 | 41173 | 41184 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 65. | NW_001092592 | ACC | 7 | 41353 | 41373 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 66. | NW_001092592 | GAG | 4 | 41904 | 41915 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109719 |
| 67. | NW_001092592 | CAT | 4 | 43265 | 43276 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109721 |
| 68. | NW_001092592 | GAC | 4 | 43879 | 43890 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109721 |
| 69. | NW_001092592 | GAA | 5 | 44365 | 44378 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | 85109721 |
| 70. | NW_001092592 | TCC | 4 | 48920 | 48931 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109723 |
| 71. | NW_001092592 | GGT | 4 | 49711 | 49721 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85109723 |
| 72. | NW_001092592 | GTG | 6 | 49819 | 49835 | 17 | 0.00% | 33.33% | 66.67% | 0.00% | 85109723 |
| 73. | NW_001092592 | TGG | 4 | 50023 | 50034 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 74. | NW_001092592 | CCT | 4 | 51144 | 51155 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109725 |
| 75. | NW_001092592 | GGA | 4 | 51730 | 51741 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109725 |
| 76. | NW_001092592 | CGG | 9 | 52260 | 52286 | 27 | 0.00% | 0.00% | 66.67% | 33.33% | 85109725 |
| 77. | NW_001092592 | CTC | 4 | 52630 | 52641 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109725 |
| 78. | NW_001092592 | CCG | 4 | 52674 | 52685 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109725 |
| 79. | NW_001092592 | CTC | 5 | 54250 | 54264 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85109725 |
| 80. | NW_001092592 | TGA | 4 | 55977 | 55987 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 81. | NW_001092592 | GGT | 4 | 59124 | 59135 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109727 |
| 82. | NW_001092592 | ACA | 7 | 63234 | 63254 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | 85109729 |
| 83. | NW_001092592 | AGA | 4 | 63286 | 63297 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85109729 |
| 84. | NW_001092592 | GCC | 5 | 64013 | 64027 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85109729 |
| 85. | NW_001092592 | ACA | 4 | 64054 | 64065 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85109729 |
| 86. | NW_001092592 | TCA | 5 | 64174 | 64187 | 14 | 33.33% | 33.33% | 0.00% | 33.33% | 85109729 |
| 87. | NW_001092592 | AGC | 4 | 64195 | 64206 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109729 |
| 88. | NW_001092592 | GAC | 5 | 64454 | 64468 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85109729 |
| 89. | NW_001092592 | CGC | 5 | 64504 | 64518 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85109729 |
| 90. | NW_001092592 | GCG | 5 | 64727 | 64741 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85109729 |
| 91. | NW_001092592 | CAT | 4 | 66793 | 66803 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 92. | NW_001092592 | TAC | 4 | 68603 | 68613 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 93. | NW_001092592 | GTG | 4 | 68680 | 68690 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 94. | NW_001092592 | AAG | 4 | 72370 | 72380 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 95. | NW_001092592 | TCT | 4 | 73654 | 73665 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85109733 |
| 96. | NW_001092592 | AGA | 4 | 74870 | 74882 | 13 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 97. | NW_001092592 | TGT | 4 | 75771 | 75783 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 98. | NW_001092592 | GAT | 4 | 77322 | 77332 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 99. | NW_001092592 | AAG | 4 | 77696 | 77709 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 100. | NW_001092592 | AGA | 4 | 77748 | 77759 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 101. | NW_001092592 | GAA | 7 | 77795 | 77815 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 102. | NW_001092592 | AGC | 4 | 78338 | 78348 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 103. | NW_001092592 | AGA | 8 | 78681 | 78703 | 23 | 66.67% | 0.00% | 33.33% | 0.00% | 85109735 |
| 104. | NW_001092592 | TGA | 4 | 78701 | 78712 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85109735 |
| 105. | NW_001092592 | TGG | 4 | 78713 | 78724 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109735 |
| 106. | NW_001092592 | CAG | 8 | 78946 | 78969 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | 85109735 |
| 107. | NW_001092592 | GAT | 4 | 80122 | 80133 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 108. | NW_001092592 | GTT | 4 | 80222 | 80233 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 109. | NW_001092592 | TAG | 4 | 80251 | 80262 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 110. | NW_001092592 | TGG | 9 | 80499 | 80525 | 27 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 111. | NW_001092592 | GTA | 4 | 81033 | 81045 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 112. | NW_001092592 | ATA | 9 | 82333 | 82358 | 26 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 113. | NW_001092592 | ATA | 5 | 83098 | 83112 | 15 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 114. | NW_001092592 | ATA | 4 | 83286 | 83297 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 115. | NW_001092592 | AAT | 4 | 84767 | 84777 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 116. | NW_001092592 | TAC | 4 | 84831 | 84841 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 117. | NW_001092592 | CCA | 4 | 86186 | 86198 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | 85109739 |
| 118. | NW_001092592 | TCA | 4 | 87025 | 87035 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 119. | NW_001092592 | CAC | 5 | 88428 | 88442 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 120. | NW_001092592 | GTC | 4 | 88919 | 88930 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 121. | NW_001092592 | TCC | 4 | 89054 | 89065 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 122. | NW_001092592 | CTT | 13 | 89520 | 89558 | 39 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 123. | NW_001092592 | TCT | 10 | 89976 | 90004 | 29 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 124. | NW_001092592 | GGC | 4 | 90380 | 90391 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 125. | NW_001092592 | TAC | 4 | 91291 | 91301 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 126. | NW_001092592 | GAG | 4 | 93987 | 93998 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109743 |
| 127. | NW_001092592 | TGC | 4 | 98271 | 98281 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 128. | NW_001092592 | CGT | 4 | 98849 | 98860 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 129. | NW_001092592 | TCC | 4 | 99445 | 99456 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109747 |
| 130. | NW_001092592 | CAC | 4 | 100674 | 100685 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 131. | NW_001092592 | GAT | 4 | 100869 | 100881 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 132. | NW_001092592 | CCT | 4 | 102386 | 102396 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85109749 |
| 133. | NW_001092592 | GAA | 4 | 102768 | 102779 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85109749 |
| 134. | NW_001092592 | TCA | 4 | 103616 | 103627 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109751 |
| 135. | NW_001092592 | GGC | 4 | 105451 | 105462 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85109751 |
| 136. | NW_001092592 | CTC | 4 | 105978 | 105989 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109751 |
| 137. | NW_001092592 | GCA | 4 | 106214 | 106225 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109751 |
| 138. | NW_001092592 | GGA | 4 | 106554 | 106564 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85109751 |
| 139. | NW_001092592 | TGG | 4 | 106696 | 106708 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | 85109751 |
| 140. | NW_001092592 | CTT | 4 | 107770 | 107781 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |