List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092590 | TCTT | 3 | 6048 | 6058 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 2. | NW_001092590 | TCTT | 3 | 6194 | 6205 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 3. | NW_001092590 | TGGA | 3 | 7836 | 7847 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 85109635 |
| 4. | NW_001092590 | AGAA | 3 | 13637 | 13648 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 5. | NW_001092590 | TACC | 5 | 18963 | 18982 | 20 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 6. | NW_001092590 | AAAC | 3 | 20713 | 20723 | 11 | 75.00% | 0.00% | 0.00% | 25.00% | 85109641 |
| 7. | NW_001092590 | CTTT | 3 | 22075 | 22085 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 8. | NW_001092590 | TGAG | 3 | 22647 | 22657 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 9. | NW_001092590 | CCAT | 3 | 26056 | 26067 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 85109643 |
| 10. | NW_001092590 | GTAA | 3 | 28060 | 28070 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | 85109643 |
| 11. | NW_001092590 | TTGG | 3 | 31335 | 31346 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 12. | NW_001092590 | AGGG | 3 | 32593 | 32604 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 13. | NW_001092590 | GACC | 3 | 33352 | 33363 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 14. | NW_001092590 | CCAT | 3 | 34783 | 34793 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 15. | NW_001092590 | CCAG | 4 | 35008 | 35023 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 16. | NW_001092590 | GCGT | 3 | 35274 | 35285 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 17. | NW_001092590 | TCGA | 3 | 36281 | 36291 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 18. | NW_001092590 | TTCG | 3 | 40725 | 40735 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85109647 |
| 19. | NW_001092590 | TTGA | 3 | 43582 | 43593 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 20. | NW_001092590 | GTTT | 3 | 46763 | 46774 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 21. | NW_001092590 | GCAC | 3 | 47503 | 47514 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 22. | NW_001092590 | GGAT | 3 | 47905 | 47915 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 23. | NW_001092590 | CAAG | 3 | 48832 | 48843 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85109655 |
| 24. | NW_001092590 | GCTA | 3 | 50085 | 50096 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 25. | NW_001092590 | AAAG | 3 | 54210 | 54221 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 26. | NW_001092590 | TCCA | 3 | 54592 | 54603 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 27. | NW_001092590 | AAAG | 3 | 60688 | 60698 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 28. | NW_001092590 | GGTA | 3 | 62819 | 62830 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 29. | NW_001092590 | AAAG | 3 | 66649 | 66659 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 30. | NW_001092590 | GCAA | 3 | 69648 | 69660 | 13 | 50.00% | 0.00% | 25.00% | 25.00% | 85109667 |
| 31. | NW_001092590 | TCCG | 3 | 69870 | 69880 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85109667 |
| 32. | NW_001092590 | ATTC | 3 | 73036 | 73047 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 33. | NW_001092590 | GTAT | 4 | 76225 | 76240 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 34. | NW_001092590 | GTCT | 9 | 77307 | 77342 | 36 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 35. | NW_001092590 | CTGT | 3 | 80452 | 80464 | 13 | 0.00% | 50.00% | 25.00% | 25.00% | 85109675 |
| 36. | NW_001092590 | TGCC | 3 | 81358 | 81369 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85109675 |
| 37. | NW_001092590 | GATC | 3 | 81781 | 81791 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85109675 |
| 38. | NW_001092590 | GGTT | 3 | 82173 | 82184 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 39. | NW_001092590 | GGGC | 4 | 82653 | 82668 | 16 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 40. | NW_001092590 | GCCG | 3 | 83955 | 83966 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | Non-Coding |
| 41. | NW_001092590 | TCAA | 6 | 83968 | 83990 | 23 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 42. | NW_001092590 | GAAA | 3 | 85987 | 85997 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 43. | NW_001092590 | ATGG | 8 | 87177 | 87208 | 32 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 44. | NW_001092590 | CCCG | 3 | 88322 | 88333 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 45. | NW_001092590 | TTCC | 3 | 89124 | 89134 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | 85109681 |
| 46. | NW_001092590 | TTTC | 4 | 89944 | 89959 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | 85109681 |
| 47. | NW_001092590 | AATA | 3 | 90853 | 90863 | 11 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 48. | NW_001092590 | AACT | 3 | 91178 | 91189 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 49. | NW_001092590 | CATG | 3 | 91686 | 91697 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 50. | NW_001092590 | GCTC | 3 | 92671 | 92683 | 13 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 51. | NW_001092590 | ACGA | 3 | 95657 | 95668 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 52. | NW_001092590 | CTTG | 8 | 96163 | 96193 | 31 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 53. | NW_001092590 | AGGC | 3 | 96666 | 96681 | 16 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |