List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092589 | GAC | 4 | 1498 | 1509 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109582 |
| 2. | NW_001092589 | GCG | 4 | 1551 | 1561 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85109582 |
| 3. | NW_001092589 | CAG | 5 | 2111 | 2125 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85109582 |
| 4. | NW_001092589 | TGG | 4 | 2198 | 2209 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109582 |
| 5. | NW_001092589 | TAC | 5 | 2498 | 2512 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 6. | NW_001092589 | CTC | 4 | 2735 | 2746 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 7. | NW_001092589 | CGG | 4 | 3745 | 3756 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85109584 |
| 8. | NW_001092589 | ACA | 8 | 5333 | 5356 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | 85109586 |
| 9. | NW_001092589 | GAA | 4 | 6701 | 6711 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85109586 |
| 10. | NW_001092589 | CCA | 9 | 7175 | 7201 | 27 | 33.33% | 0.00% | 0.00% | 66.67% | 85109586 |
| 11. | NW_001092589 | AAC | 4 | 7265 | 7276 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85109586 |
| 12. | NW_001092589 | AGC | 8 | 7275 | 7300 | 26 | 33.33% | 0.00% | 33.33% | 33.33% | 85109586 |
| 13. | NW_001092589 | AAG | 4 | 7597 | 7608 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85109586 |
| 14. | NW_001092589 | GAT | 4 | 8682 | 8692 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 15. | NW_001092589 | AGC | 4 | 11549 | 11560 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 16. | NW_001092589 | GGA | 4 | 13641 | 13652 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 17. | NW_001092589 | CTT | 4 | 13786 | 13797 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 18. | NW_001092589 | GCC | 4 | 18224 | 18234 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 19. | NW_001092589 | TGC | 4 | 18562 | 18573 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109590 |
| 20. | NW_001092589 | GAC | 4 | 19613 | 19624 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109590 |
| 21. | NW_001092589 | CAA | 7 | 22419 | 22439 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | 85109592 |
| 22. | NW_001092589 | TCA | 9 | 22632 | 22658 | 27 | 33.33% | 33.33% | 0.00% | 33.33% | 85109592 |
| 23. | NW_001092589 | CAC | 5 | 22664 | 22679 | 16 | 33.33% | 0.00% | 0.00% | 66.67% | 85109592 |
| 24. | NW_001092589 | CGA | 6 | 22748 | 22768 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85109592 |
| 25. | NW_001092589 | GAA | 8 | 23193 | 23216 | 24 | 66.67% | 0.00% | 33.33% | 0.00% | 85109592 |
| 26. | NW_001092589 | AGA | 5 | 23337 | 23352 | 16 | 66.67% | 0.00% | 33.33% | 0.00% | 85109592 |
| 27. | NW_001092589 | AGT | 11 | 24350 | 24382 | 33 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 28. | NW_001092589 | GGC | 4 | 24834 | 24845 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85109594 |
| 29. | NW_001092589 | GCT | 4 | 24950 | 24964 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85109594 |
| 30. | NW_001092589 | GGC | 4 | 25065 | 25075 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85109594 |
| 31. | NW_001092589 | TTG | 5 | 28831 | 28845 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85109594 |
| 32. | NW_001092589 | TTG | 9 | 28843 | 28869 | 27 | 0.00% | 66.67% | 33.33% | 0.00% | 85109594 |
| 33. | NW_001092589 | GAC | 4 | 30168 | 30179 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 34. | NW_001092589 | AGT | 4 | 32560 | 32570 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 35. | NW_001092589 | CTC | 5 | 35123 | 35138 | 16 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 36. | NW_001092589 | CAG | 4 | 36036 | 36047 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 37. | NW_001092589 | CAA | 4 | 38690 | 38701 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85109596 |
| 38. | NW_001092589 | AGG | 4 | 39689 | 39699 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 39. | NW_001092589 | GAT | 4 | 43522 | 43532 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85109598 |
| 40. | NW_001092589 | ACC | 4 | 44179 | 44190 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 41. | NW_001092589 | ATT | 4 | 46249 | 46260 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 42. | NW_001092589 | TTA | 4 | 46411 | 46421 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 43. | NW_001092589 | ATT | 4 | 46425 | 46437 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 44. | NW_001092589 | ATT | 4 | 46752 | 46764 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 45. | NW_001092589 | TAT | 4 | 46770 | 46781 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 46. | NW_001092589 | TAG | 5 | 46917 | 46931 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 47. | NW_001092589 | ATC | 4 | 48116 | 48127 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 48. | NW_001092589 | TGG | 4 | 49236 | 49247 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109602 |
| 49. | NW_001092589 | AGC | 4 | 49394 | 49404 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85109602 |
| 50. | NW_001092589 | TCC | 4 | 49806 | 49820 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 51. | NW_001092589 | ACA | 6 | 50863 | 50880 | 18 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 52. | NW_001092589 | CGA | 4 | 55091 | 55102 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109604 |
| 53. | NW_001092589 | ACA | 4 | 56641 | 56652 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85109604 |
| 54. | NW_001092589 | CTG | 4 | 57556 | 57567 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 55. | NW_001092589 | GAC | 4 | 61303 | 61314 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 56. | NW_001092589 | AGC | 4 | 62734 | 62745 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109608 |
| 57. | NW_001092589 | TTC | 4 | 63236 | 63247 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 58. | NW_001092589 | ACG | 4 | 64507 | 64517 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 59. | NW_001092589 | GCG | 5 | 65348 | 65361 | 14 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 60. | NW_001092589 | GTG | 4 | 66955 | 66965 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85109610 |
| 61. | NW_001092589 | ACC | 4 | 67583 | 67594 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109610 |
| 62. | NW_001092589 | GTC | 4 | 68317 | 68327 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 63. | NW_001092589 | TCT | 5 | 68779 | 68793 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 64. | NW_001092589 | CTT | 4 | 68798 | 68808 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 65. | NW_001092589 | CTT | 4 | 68813 | 68823 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 66. | NW_001092589 | TCT | 8 | 70038 | 70061 | 24 | 0.00% | 66.67% | 0.00% | 33.33% | 85109612 |
| 67. | NW_001092589 | GTG | 4 | 70304 | 70314 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85109612 |
| 68. | NW_001092589 | CTT | 4 | 71499 | 71509 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85109612 |
| 69. | NW_001092589 | TGA | 4 | 73070 | 73080 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85109612 |
| 70. | NW_001092589 | TCT | 5 | 73936 | 73950 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85109612 |
| 71. | NW_001092589 | CTT | 4 | 73949 | 73960 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85109612 |
| 72. | NW_001092589 | CTC | 4 | 74664 | 74675 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109612 |
| 73. | NW_001092589 | GTC | 5 | 74793 | 74807 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85109612 |
| 74. | NW_001092589 | ATG | 5 | 76311 | 76325 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 75. | NW_001092589 | TGG | 4 | 76503 | 76514 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 76. | NW_001092589 | TAC | 4 | 77112 | 77122 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 77. | NW_001092589 | TCC | 4 | 78879 | 78890 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109614 |
| 78. | NW_001092589 | TCC | 5 | 80176 | 80190 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85109616 |
| 79. | NW_001092589 | GCC | 4 | 80475 | 80486 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109616 |
| 80. | NW_001092589 | CTT | 8 | 86949 | 86972 | 24 | 0.00% | 66.67% | 0.00% | 33.33% | 85109620 |
| 81. | NW_001092589 | GCA | 4 | 86991 | 87002 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109620 |
| 82. | NW_001092589 | AAG | 4 | 87488 | 87499 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 83. | NW_001092589 | ATG | 5 | 88767 | 88780 | 14 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 84. | NW_001092589 | ACC | 4 | 90032 | 90042 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85109624 |
| 85. | NW_001092589 | TCG | 4 | 92034 | 92045 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109624 |
| 86. | NW_001092589 | TTG | 4 | 92441 | 92452 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 87. | NW_001092589 | TGT | 4 | 92556 | 92567 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 88. | NW_001092589 | GTG | 4 | 92571 | 92582 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 89. | NW_001092589 | GTG | 4 | 92790 | 92801 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |