List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092588 | TTA | 4 | 33 | 43 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092588 | ATA | 4 | 82 | 93 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092588 | ATT | 4 | 647 | 658 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 4. | NW_001092588 | ATT | 4 | 920 | 931 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 5. | NW_001092588 | TAA | 4 | 1914 | 1925 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 6. | NW_001092588 | CTA | 4 | 2292 | 2302 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 7. | NW_001092588 | CCT | 4 | 2375 | 2385 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 8. | NW_001092588 | TAT | 4 | 2652 | 2662 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 9. | NW_001092588 | TTA | 4 | 2785 | 2796 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 10. | NW_001092588 | ATA | 4 | 2835 | 2845 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 11. | NW_001092588 | TAA | 4 | 2954 | 2964 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 12. | NW_001092588 | TAA | 4 | 3162 | 3174 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 13. | NW_001092588 | CAA | 4 | 4094 | 4105 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 14. | NW_001092588 | CAG | 4 | 4342 | 4353 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109529 |
| 15. | NW_001092588 | CAC | 4 | 4423 | 4434 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109529 |
| 16. | NW_001092588 | GAA | 4 | 5439 | 5449 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 17. | NW_001092588 | GAT | 5 | 5487 | 5501 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 18. | NW_001092588 | CAT | 4 | 5657 | 5668 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 19. | NW_001092588 | GTA | 14 | 5836 | 5878 | 43 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 20. | NW_001092588 | CCA | 4 | 8056 | 8067 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109531 |
| 21. | NW_001092588 | CTA | 4 | 8932 | 8943 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109531 |
| 22. | NW_001092588 | CTT | 4 | 9320 | 9331 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85109531 |
| 23. | NW_001092588 | CGT | 5 | 9342 | 9356 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85109531 |
| 24. | NW_001092588 | CAA | 8 | 9500 | 9523 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | 85109531 |
| 25. | NW_001092588 | TGG | 4 | 9800 | 9811 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109531 |
| 26. | NW_001092588 | GAC | 4 | 9989 | 10000 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109531 |
| 27. | NW_001092588 | TAG | 4 | 10004 | 10014 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85109531 |
| 28. | NW_001092588 | CTC | 4 | 11524 | 11534 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85109533 |
| 29. | NW_001092588 | CGC | 4 | 11600 | 11611 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109533 |
| 30. | NW_001092588 | TGC | 4 | 11984 | 11995 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109533 |
| 31. | NW_001092588 | AGG | 5 | 12721 | 12735 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85109533 |
| 32. | NW_001092588 | GTG | 4 | 14082 | 14092 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85109535 |
| 33. | NW_001092588 | GAC | 4 | 15300 | 15310 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85109535 |
| 34. | NW_001092588 | TGC | 8 | 15308 | 15331 | 24 | 0.00% | 33.33% | 33.33% | 33.33% | 85109535 |
| 35. | NW_001092588 | GTC | 7 | 15395 | 15416 | 22 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 36. | NW_001092588 | CGT | 5 | 15517 | 15531 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 37. | NW_001092588 | ACG | 4 | 15817 | 15828 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 38. | NW_001092588 | GAG | 4 | 17247 | 17258 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 39. | NW_001092588 | TCA | 4 | 17915 | 17926 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109539 |
| 40. | NW_001092588 | ATC | 4 | 17953 | 17964 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109539 |
| 41. | NW_001092588 | TCA | 13 | 17987 | 18025 | 39 | 33.33% | 33.33% | 0.00% | 33.33% | 85109539 |
| 42. | NW_001092588 | TCA | 4 | 18035 | 18046 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109539 |
| 43. | NW_001092588 | GCC | 4 | 19617 | 19628 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109541 |
| 44. | NW_001092588 | GAG | 4 | 21841 | 21852 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109541 |
| 45. | NW_001092588 | TAG | 11 | 22501 | 22533 | 33 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 46. | NW_001092588 | TCC | 4 | 23295 | 23307 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85109543 |
| 47. | NW_001092588 | AAG | 4 | 24309 | 24320 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85109543 |
| 48. | NW_001092588 | CCT | 4 | 24690 | 24701 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109545 |
| 49. | NW_001092588 | CAT | 5 | 26800 | 26816 | 17 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 50. | NW_001092588 | ACA | 9 | 26841 | 26866 | 26 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 51. | NW_001092588 | CAC | 7 | 26870 | 26890 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 52. | NW_001092588 | CCA | 4 | 27062 | 27073 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109547 |
| 53. | NW_001092588 | TCT | 8 | 31537 | 31560 | 24 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 54. | NW_001092588 | GTC | 4 | 32471 | 32483 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 55. | NW_001092588 | GTG | 4 | 33726 | 33737 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109549 |
| 56. | NW_001092588 | CAA | 4 | 35378 | 35390 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | 85109549 |
| 57. | NW_001092588 | ATC | 4 | 41267 | 41278 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109553 |
| 58. | NW_001092588 | GAA | 4 | 43345 | 43356 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 59. | NW_001092588 | TCC | 4 | 45231 | 45241 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85109555 |
| 60. | NW_001092588 | GAA | 4 | 47963 | 47973 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85109557 |
| 61. | NW_001092588 | CAC | 4 | 48400 | 48411 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109557 |
| 62. | NW_001092588 | TAC | 4 | 50314 | 50325 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109559 |
| 63. | NW_001092588 | GCG | 4 | 50830 | 50840 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85109559 |
| 64. | NW_001092588 | CAT | 4 | 54130 | 54141 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 65. | NW_001092588 | GCC | 4 | 54826 | 54837 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109563 |
| 66. | NW_001092588 | CCG | 4 | 55095 | 55105 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85109563 |
| 67. | NW_001092588 | CGT | 4 | 55137 | 55148 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109563 |
| 68. | NW_001092588 | AGA | 4 | 55476 | 55486 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85109563 |
| 69. | NW_001092588 | GGA | 4 | 55827 | 55837 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85109563 |
| 70. | NW_001092588 | GAG | 4 | 57146 | 57157 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109563 |
| 71. | NW_001092588 | ATC | 4 | 62289 | 62301 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 72. | NW_001092588 | CTC | 4 | 64344 | 64355 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109569 |
| 73. | NW_001092588 | CGC | 7 | 68305 | 68325 | 21 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 74. | NW_001092588 | CTG | 4 | 74620 | 74632 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 75. | NW_001092588 | TGT | 4 | 75117 | 75127 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 76. | NW_001092588 | CAA | 4 | 75166 | 75177 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 77. | NW_001092588 | GCT | 4 | 75568 | 75579 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 78. | NW_001092588 | GAA | 4 | 75678 | 75689 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 79. | NW_001092588 | AGA | 4 | 75838 | 75848 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 80. | NW_001092588 | CAA | 4 | 76017 | 76028 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 81. | NW_001092588 | CTC | 4 | 76130 | 76141 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109575 |
| 82. | NW_001092588 | TGA | 4 | 77259 | 77270 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85109575 |
| 83. | NW_001092588 | TTG | 4 | 77863 | 77873 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | 85109575 |
| 84. | NW_001092588 | TTC | 4 | 77949 | 77960 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85109575 |
| 85. | NW_001092588 | ACC | 4 | 77964 | 77975 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109575 |
| 86. | NW_001092588 | TCC | 4 | 77973 | 77984 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109575 |
| 87. | NW_001092588 | TCT | 4 | 78061 | 78071 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85109575 |
| 88. | NW_001092588 | TGC | 4 | 78215 | 78225 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85109575 |
| 89. | NW_001092588 | GCA | 4 | 78232 | 78242 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85109575 |
| 90. | NW_001092588 | GGA | 4 | 78401 | 78412 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109575 |
| 91. | NW_001092588 | TTG | 4 | 78455 | 78466 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85109575 |
| 92. | NW_001092588 | TTG | 4 | 78628 | 78638 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 93. | NW_001092588 | GTC | 5 | 79264 | 79278 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 94. | NW_001092588 | CTC | 4 | 79477 | 79488 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 95. | NW_001092588 | AGA | 4 | 80425 | 80436 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 96. | NW_001092588 | GCA | 4 | 81285 | 81296 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109577 |
| 97. | NW_001092588 | TGA | 4 | 81550 | 81561 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85109577 |
| 98. | NW_001092588 | AGA | 5 | 82947 | 82961 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85109577 |
| 99. | NW_001092588 | TGG | 4 | 86077 | 86088 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109577 |
| 100. | NW_001092588 | AGC | 4 | 86093 | 86104 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109577 |
| 101. | NW_001092588 | ACA | 4 | 87260 | 87271 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 102. | NW_001092588 | GAG | 4 | 88329 | 88340 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 103. | NW_001092588 | TCC | 4 | 88586 | 88597 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 104. | NW_001092588 | GGA | 4 | 89588 | 89599 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 105. | NW_001092588 | CGG | 4 | 90831 | 90841 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 106. | NW_001092588 | CAT | 4 | 93162 | 93173 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 107. | NW_001092588 | CAC | 5 | 93795 | 93809 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 108. | NW_001092588 | GAT | 4 | 93862 | 93872 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 109. | NW_001092588 | CAA | 4 | 95174 | 95185 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 110. | NW_001092588 | TCG | 4 | 95194 | 95205 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |