List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092588 | TTAT | 3 | 161 | 172 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092588 | GCAA | 3 | 2727 | 2738 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 3. | NW_001092588 | AGGA | 3 | 3958 | 3969 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 4. | NW_001092588 | AACC | 3 | 7856 | 7866 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | 85109531 |
| 5. | NW_001092588 | CCAC | 3 | 9659 | 9670 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | 85109531 |
| 6. | NW_001092588 | CTAC | 4 | 11218 | 11234 | 17 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 7. | NW_001092588 | GCAA | 3 | 18776 | 18787 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 8. | NW_001092588 | AGAA | 3 | 20097 | 20107 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | 85109541 |
| 9. | NW_001092588 | ACTG | 3 | 22074 | 22084 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 10. | NW_001092588 | CGAA | 3 | 23092 | 23102 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 11. | NW_001092588 | GTAG | 6 | 26644 | 26667 | 24 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 12. | NW_001092588 | CGTC | 3 | 27021 | 27032 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85109547 |
| 13. | NW_001092588 | TTTC | 3 | 27344 | 27354 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | 85109547 |
| 14. | NW_001092588 | CCAG | 4 | 30090 | 30105 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 15. | NW_001092588 | AGGT | 4 | 30394 | 30409 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 16. | NW_001092588 | CATG | 4 | 30673 | 30688 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 17. | NW_001092588 | GCTT | 4 | 32324 | 32339 | 16 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 18. | NW_001092588 | ATTC | 4 | 32484 | 32499 | 16 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 19. | NW_001092588 | CGGA | 3 | 32587 | 32597 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 20. | NW_001092588 | TCGA | 3 | 32614 | 32624 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 21. | NW_001092588 | AGGG | 3 | 36140 | 36150 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | 85109549 |
| 22. | NW_001092588 | ATCA | 3 | 36254 | 36265 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 23. | NW_001092588 | TAGG | 3 | 38411 | 38421 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85109551 |
| 24. | NW_001092588 | AATG | 3 | 38849 | 38859 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | 85109551 |
| 25. | NW_001092588 | TTGG | 3 | 39720 | 39730 | 11 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 26. | NW_001092588 | TACC | 4 | 40245 | 40261 | 17 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 27. | NW_001092588 | ATTG | 3 | 45784 | 45795 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 85109555 |
| 28. | NW_001092588 | AAGT | 3 | 46050 | 46061 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | 85109555 |
| 29. | NW_001092588 | CATG | 3 | 46825 | 46835 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 30. | NW_001092588 | GGAA | 3 | 57723 | 57734 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | 85109563 |
| 31. | NW_001092588 | CTCG | 3 | 58053 | 58064 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85109563 |
| 32. | NW_001092588 | TGCT | 3 | 59758 | 59768 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 33. | NW_001092588 | CTGC | 3 | 65829 | 65840 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 34. | NW_001092588 | CCAA | 3 | 68082 | 68092 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 35. | NW_001092588 | CCAT | 3 | 73642 | 73653 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 36. | NW_001092588 | GGTA | 3 | 73858 | 73869 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 37. | NW_001092588 | GATC | 4 | 73942 | 73956 | 15 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 38. | NW_001092588 | CCCT | 3 | 75090 | 75101 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 39. | NW_001092588 | CAGG | 3 | 76626 | 76637 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85109575 |
| 40. | NW_001092588 | ACAT | 4 | 76745 | 76760 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | 85109575 |
| 41. | NW_001092588 | ATAG | 4 | 77359 | 77375 | 17 | 50.00% | 25.00% | 25.00% | 0.00% | 85109575 |
| 42. | NW_001092588 | AAAC | 3 | 78997 | 79008 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 43. | NW_001092588 | CAAG | 3 | 83120 | 83131 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85109577 |
| 44. | NW_001092588 | GCTT | 3 | 84519 | 84529 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85109577 |
| 45. | NW_001092588 | TAGG | 4 | 86915 | 86930 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 46. | NW_001092588 | TCCC | 3 | 87163 | 87174 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 47. | NW_001092588 | CGAG | 3 | 87396 | 87406 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 48. | NW_001092588 | TAGG | 4 | 87527 | 87542 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 49. | NW_001092588 | AAGG | 3 | 89457 | 89468 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 50. | NW_001092588 | GAAA | 3 | 89743 | 89753 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 51. | NW_001092588 | AACG | 3 | 90353 | 90364 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 52. | NW_001092588 | TAGG | 3 | 90405 | 90416 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 53. | NW_001092588 | AGGG | 4 | 90913 | 90928 | 16 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 54. | NW_001092588 | GCGG | 3 | 91294 | 91305 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 55. | NW_001092588 | GAAA | 4 | 92521 | 92536 | 16 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 56. | NW_001092588 | CGGA | 3 | 92698 | 92709 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 57. | NW_001092588 | ATCC | 4 | 93030 | 93045 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 58. | NW_001092588 | GCTG | 5 | 93477 | 93497 | 21 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 59. | NW_001092588 | TCAG | 3 | 93895 | 93907 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 60. | NW_001092588 | ATTT | 3 | 93968 | 93979 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 61. | NW_001092588 | TTTC | 3 | 95902 | 95913 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |